FFCP PHASE1:Hg19::chr10:5855382..5855404,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2665 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4227 | |||
|TSSclassifier=strong | |||
|UniProt=E7EU23,Q5SX86 | |||
|association_with_transcript=0bp_to_ENST00000380132,ENST00000418688_5end | |||
|description=CAGE_peak_1_at_GDI2_5end | |||
|id=chr10:5855382..5855404,- | |||
|ontology_enrichment_celltype=CL:0000548!6.52e-15!679;CL:0000004!6.52e-15!679;CL:0000255!6.52e-15!679;CL:0000012!1.08e-14!682;CL:0000055!7.64e-13!180;CL:0000144!7.37e-12!625;CL:0002371!1.22e-11!591;CL:0000003!5.65e-08!722;CL:0000034!1.02e-07!444;CL:0000393!1.61e-07!60;CL:0000211!1.61e-07!60;CL:0000680!4.05e-07!57;CL:0000056!4.05e-07!57;CL:0000355!4.05e-07!57;CL:0000723!5.25e-07!436;CL:0000048!6.14e-07!430;CL:0000187!8.01e-07!54 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,1.74e-08,441;CL:0000723,9.81e-08,433;CL:0000393,9.96e-08,61;CL:0000211,9.96e-08,61;CL:0000048,1.15e-07,427;CL:0000680,2.52e-07,58;CL:0000056,2.52e-07,58;CL:0000355,2.52e-07,58;CL:0000187,4.99e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.84e-09!83;UBERON:0002329!5.84e-09!83;UBERON:0003077!5.84e-09!83;UBERON:0003059!5.84e-09!83;UBERON:0007282!5.84e-09!83;UBERON:0009618!5.84e-09!83;UBERON:0007285!5.84e-09!83;UBERON:0004290!4.25e-08!70;UBERON:0000486!2.73e-07!82;UBERON:0001134!9.49e-07!61;UBERON:0002036!9.49e-07!61;UBERON:0003082!9.49e-07!61 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,2.64e-08,71;UBERON:0003059,2.64e-08,71;UBERON:0007282,2.64e-08,71;UBERON:0004290,2.64e-08,71;UBERON:0009618,2.64e-08,71;UBERON:0000490,5.35e-08,148;UBERON:0007524,7.67e-08,73;UBERON:0003077,7.83e-08,72;UBERON:0007285,7.83e-08,72;UBERON:0002204,1.61e-07,167;UBERON:0000486,1.75e-07,83;UBERON:0001134,5.99e-07,62;UBERON:0002036,5.99e-07,62;UBERON:0003082,5.99e-07,62;UBERON:0002385,6.77e-07,64;UBERON:0001015,6.77e-07,64;UBERON:0000383,6.77e-07,64 | |||
|phase1_expression=317.210450206392,176.632932210061,286.701257931205,266.194973619327,235.548496763181,239.893094127601,253.299878168311,341.128731650489,239.768406687452,92.8874279975703,47.4504794221251,117.739899578163,72.0083850563678,401.250516296471,374.147637196817,253.466580212319,253.13170177007,254.147911454806,233.231877821862,95.788183183741,78.1322647465489,52.6603932083188,307.703686165886,308.378079689208,281.968768529927,277.762729893803,295.397920840905,295.480273051552,115.649097393578,140.865389101677,188.411222075664,235.371833466605,177.109080241611,270.659935442089,339.151404140561,309.502419125117,220.787530379805,170.630585827818,199.341180785321,128.470435463784,202.867419661371,234.82290786376,239.287702332159,191.053285756348,232.393705368618,219.538575374974,216.391433359192,234.776864060463,206.264443016139,341.490869686393,555.868733168148,542.490235364415,215.810796141123,223.337700520004,219.390908282834,224.573111074327,215.32295239564,232.813529885108,199.260613933458,208.924796626537,181.571743726928,342.385649593811,521.996391995811,493.994485867393,197.342282267437,207.095607012266,204.908519919544,331.648238138901,452.647173188735,455.87938503604,196.149438853211,202.920977429148,194.940830663585,324.699375061455,315.29217684816,224.963726630487,247.122988522289,279.17884379236,220.676230535091,319.49928573394,368.791519527113,262.305724806014,316.793240030381,284.538216467571,315.775785121562,268.413309994333,290.687486588145,283.35295289756,276.316756824072,298.618825169569,178.163659331257,151.507194857702,126.914711737576,210.152412440651,164.789517516572,217.291869939439,104.649597700559,120.654304163994,135.696989339676,173.205209224743,122.54677225423,140.613998303216,118.844304328826,197.307919143642,137.875564698224,154.409124524784,143.526047795458,175.228925384724,165.045312053485,211.467145320327,203.117263072599,198.804916814246,139.389369372337,130.82746493587,110.807655233275,211.435233473658,127.995644863042,161.848526822319,147.76350013939,177.122370364198,167.979531094956,170.130915956259,178.431516107161,199.019180345121,166.15786631462,163.613081162416,150.266423436552,110.883708773603,97.8831116567637,87.4739399452106,299.882445566173,291.754873971082,307.893048919221,379.511110003795,222.092694411699,219.73216926357,370.603251325812,175.188553308949,313.855592984705,248.780383952997,292.22633200103,117.815678410193,47.722682766323,67.4827685867662,247.629661358523,292.537958662769,257.007737682966,139.993996467236,119.546936353047,128.895752961359,330.740645858197,301.94234288225,279.448103794113,284.915202729701,233.241686532708,221.745141803694,291.756973285388,344.211123213546,353.63166511059,408.024426960133,304.538963734515,360.368978110575,225.26927911696,341.559001641312,226.839745406893,375.505357434555,292.786301904525,247.857868543792,233.041288948143,290.475291827847,262.344897308343,67.2080128923923,81.4338554711483,59.3087910913847,276.316405142597,299.101268551737,267.863772785142,292.286516543041,256.779908711611,231.559848858773,265.804999366965,169.953940859423,352.290892072535,289.49323427776,294.558349410453,160.438873303627,346.281730612479,61.6265365722885,309.350636138848,356.544888465281,264.225267215584,306.151737964295,320.832175737637,329.357141716773,362.9861164912,286.94096524029,309.460714621418,231.66055717,193.857272554389,70.082424869228,28.0261075308333,335.493875110454,290.650321662573,403.682416260455,223.000631407466,212.70253028452,191.253048988098,304.565411784656,325.233409503907,294.068524403167,291.830227896717,281.185357031085,328.325358153666,320.762472356808,325.332264867619,268.523144595855,309.654802402289,305.192433061134,295.756324337708,308.097384296655,253.121839464346,307.495403790758,306.565550897362,285.446280122189,292.656587393966,266.154664520996,302.738738613656,372.276119215052,360.317416838377,296.574278398975,276.291331708813,363.152472280451,239.367784464618,174.961535188465,265.219048996763,251.687416993333,266.373528736077,212.36070607152,210.056523837315,215.704871745716,212.86736737352,205.678195223231,210.933580389765,232.718837884444,209.56452475387,210.456694849676,122.533805467692,42.0725321410337,67.4981378583496,55.8633103265059,271.255774518718,184.771516735394,184.917240791279,130.673077426737,298.24696346705,322.032779930332,236.950866197223,281.004383144049,229.809230932988,374.242495330777,55.0616035974449,44.7171957670219,303.095818253074,335.734452807822,367.25439556965,310.965328477353,250.01217679137,297.557494094912,230.739684204108,224.064888306762,244.493487044786,400.615301918375,268.130616768866,262.454735162976,232.823229683619,256.754701105962,324.649644797825,299.352956669381,236.930495724101,348.312909192432,164.650571604733,132.897322061635,175.826343168693,205.017711884441,314.251078851945,246.764522910647,200.44183472918,195.022588465884,279.176642689523,293.435167513507,198.363544245621,135.566480973541,162.17714560598,386.052736561481,287.629567561056,114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| |||
|short_description=p1@GDI2 | |||
}} |
Revision as of 01:32, 11 January 2014
Short description: | p1@GDI2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GDI2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000380132, ENST00000418688_5end |
EntrezGene: | GDI2 |
HGNC: | 4227 |
UniProt: | E7EU23Q5SX86 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 1.74e-08 | 441 |
somatic stem cell | 9.81e-08 | 433 |
electrically responsive cell | 9.96e-08 | 61 |
electrically active cell | 9.96e-08 | 61 |
multi fate stem cell | 1.15e-07 | 427 |
muscle precursor cell | 2.52e-07 | 58 |
myoblast | 2.52e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.52e-07 | 58 |
muscle cell | 4.99e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
somite | 2.64e-08 | 71 |
presomitic mesoderm | 2.64e-08 | 71 |
presumptive segmental plate | 2.64e-08 | 71 |
dermomyotome | 2.64e-08 | 71 |
trunk paraxial mesoderm | 2.64e-08 | 71 |
unilaminar epithelium | 5.35e-08 | 148 |
dense mesenchyme tissue | 7.67e-08 | 73 |
paraxial mesoderm | 7.83e-08 | 72 |
presumptive paraxial mesoderm | 7.83e-08 | 72 |
musculoskeletal system | 1.61e-07 | 167 |
multilaminar epithelium | 1.75e-07 | 83 |
skeletal muscle tissue | 5.99e-07 | 62 |
striated muscle tissue | 5.99e-07 | 62 |
myotome | 5.99e-07 | 62 |
muscle tissue | 6.77e-07 | 64 |
musculature | 6.77e-07 | 64 |
musculature of body | 6.77e-07 | 64 |