FFCP PHASE1:Hg19::chr1:209807866..209807879,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C3932 | |||
|description=CAGE_peak_at_chr1:209807866..209807879,- | |||
|id=chr1:209807866..209807879,- | |||
|ontology_enrichment_celltype=CL:0002076!1.71e-21!43;CL:0000066!7.02e-19!254;CL:0002368!1.36e-14!13;CL:0000223!2.75e-14!59;CL:0002159!2.67e-11!13;CL:0002621!1.20e-10!3;CL:0002231!1.36e-10!3;CL:0002251!5.67e-08!21;CL:0000244!7.27e-08!4;CL:0000731!7.27e-08!4;CL:0002536!4.81e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002621;5.35e-32;3!CL:0002368;4.35e-20;13!CL:0002076;1.13e-19;42!CL:0002159;8.96e-19;14!CL:0002231;1.57e-15;3!CL:0000244;2.77e-11;4!CL:0000731;2.77e-11;4!CL:0000362;3.37e-11;9!CL:0000312;1.49e-09;5!CL:0000240;4.19e-08;6!CL:0000311;4.19e-08;6!CL:0000079;4.19e-08;6!CL:0000237;4.19e-08;6!CL:0002077;5.50e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,4.57e-32,3;CL:0002076,1.02e-23,42;CL:0002368,4.81e-20,13;CL:0002159,8.65e-19,14;CL:0000223,8.21e-17,58;CL:0002231,1.58e-15,3;CL:0000244,2.02e-11,4;CL:0000731,2.02e-11,4;CL:0000362,2.99e-11,9;CL:0000066,4.65e-11,253;CL:0000312,1.55e-09,5;CL:0000240,4.34e-08,6;CL:0000311,4.34e-08,6;CL:0000079,4.34e-08,6;CL:0000237,4.34e-08,6;CL:0000036,4.34e-08,6;CL:0000357,4.34e-08,6;CL:0000114,4.34e-08,6;CL:0002077,1.12e-07,34;CL:0002321,3.45e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000223;2.70e-11;58!CL:0000357;4.19e-08;6!CL:0000114;4.19e-08;6 | |||
|ontology_enrichment_disease=DOID:1749!1.06e-11!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.42e-15!169;UBERON:0000925!1.42e-15!169;UBERON:0006595!1.42e-15!169;UBERON:0001004!1.30e-11!72;UBERON:0001949!1.20e-10!3;UBERON:0005631!7.60e-10!14;UBERON:0000158!7.60e-10!14;UBERON:0005911!1.60e-08!82;UBERON:0005910!1.97e-08!6;UBERON:0000161!2.97e-08!35;UBERON:0000065!8.18e-08!53;UBERON:0001007!1.35e-07!155;UBERON:0001555!1.35e-07!155;UBERON:0007026!1.35e-07!155;UBERON:0000305!4.30e-07!7;UBERON:0003343!4.67e-07!4;UBERON:0004785!4.67e-07!4;UBERON:0002394!6.85e-07!4;UBERON:0003928!6.85e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;5.35e-32;3!UBERON:0000486;1.31e-21;12!UBERON:0003929;4.25e-14;7!UBERON:0003350;2.08e-12;8!UBERON:0001828;2.08e-12;8!UBERON:0010371;6.38e-12;31!UBERON:0000365;3.30e-09;5!UBERON:0005911;3.84e-09;36!UBERON:0003729;7.73e-08;13!UBERON:0004807;7.85e-08;22!UBERON:0005910;8.12e-08;6!UBERON:0001003;6.44e-07;15!UBERON:0007376;6.44e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,4.57e-32,3;UBERON:0003350,1.96e-12,8;UBERON:0001828,1.96e-12,8;UBERON:0003102,2.52e-09,99;UBERON:0000365,2.57e-09,5;UBERON:0004119,4.30e-09,160;UBERON:0000925,4.30e-09,160;UBERON:0006595,4.30e-09,160;UBERON:0001004,3.84e-08,74;UBERON:0005910,6.60e-08,6;UBERON:0003729,7.46e-08,13;UBERON:0000161,2.61e-07,36;UBERON:0005911,2.64e-07,82;UBERON:0001003,5.99e-07,15;UBERON:0007376,5.99e-07,15;UBERON:0007383,5.99e-07,15;UBERON:0003124,9.65e-07,7 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6024118375565,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89891279744945,1.63647672354501,2.29443676311203,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49976170175365,3.37205259772859,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86358894857377,0.850650583454319,0.716468181622786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,1.5156378572313,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,28.0709058424599,14.9171202076152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95018073810956,0,0,0,0,0,0,0,0,0,12.0657988213514,3.84380134730212,0.255225424989168,1.51736671283325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53955380360819,0.670302275535787,0,0,1.72202149068492,1.68471475667626,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0.11796972334774,0.183428598521679,0,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:209807866..209807879,- | |||
}} |
Revision as of 23:58, 10 January 2014
Short description: | p@chr1:209807866..209807879, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:209807866..209807879, - |
Coexpression cluster: | C3932_Prostate_Small_Keratinocyte_Mallassezderived_Gingival_Sebocyte_Bronchial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 4.57e-32 | 3 |
endo-epithelial cell | 1.02e-23 | 42 |
respiratory epithelial cell | 4.81e-20 | 13 |
general ecto-epithelial cell | 8.65e-19 | 14 |
endodermal cell | 8.21e-17 | 58 |
epithelial cell of prostate | 1.58e-15 | 3 |
transitional epithelial cell | 2.02e-11 | 4 |
urothelial cell | 2.02e-11 | 4 |
epidermal cell | 2.99e-11 | 9 |
epithelial cell | 4.65e-11 | 253 |
keratinocyte | 1.55e-09 | 5 |
stratified squamous epithelial cell | 4.34e-08 | 6 |
keratin accumulating cell | 4.34e-08 | 6 |
stratified epithelial cell | 4.34e-08 | 6 |
keratinizing barrier epithelial cell | 4.34e-08 | 6 |
epithelial fate stem cell | 4.34e-08 | 6 |
stratified epithelial stem cell | 4.34e-08 | 6 |
surface ectodermal cell | 4.34e-08 | 6 |
ecto-epithelial cell | 1.12e-07 | 34 |
embryonic cell | 3.45e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 4.57e-32 | 3 |
epithelium of mucosa | 1.96e-12 | 8 |
gingiva | 1.96e-12 | 8 |
surface structure | 2.52e-09 | 99 |
urothelium | 2.57e-09 | 5 |
endoderm-derived structure | 4.30e-09 | 160 |
endoderm | 4.30e-09 | 160 |
presumptive endoderm | 4.30e-09 | 160 |
respiratory system | 3.84e-08 | 74 |
transitional epithelium | 6.60e-08 | 6 |
mouth mucosa | 7.46e-08 | 13 |
orifice | 2.61e-07 | 36 |
endo-epithelium | 2.64e-07 | 82 |
skin epidermis | 5.99e-07 | 15 |
outer epithelium | 5.99e-07 | 15 |
enveloping layer of ectoderm | 5.99e-07 | 15 |
chorion | 9.65e-07 | 7 |