FFCP PHASE1:Hg19::chr1:202129704..202129762,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5778 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9659 | |||
|TSSclassifier=weak | |||
|UniProt=P35236,C9JAW7,F8WF66,E7EUM0,C9IYI6,F8WEY3,E9PE54,F8WF08,B4DDG6,B4DX06 | |||
|association_with_transcript=0bp_to_ENST00000308986,ENST00000435759,ENST00000462815,ENST00000464870,ENST00000467283,ENST00000468385,ENST00000476061,ENST00000479092,ENST00000480836,ENST00000486116,ENST00000491584,ENST00000495688,ENST00000496197,ENST00000543735,ENST00000544762,uc001gxm.1,uc001gxn.1,uc010ppv.1,uc010ppw.1,uc010ppy.1_5end | |||
|description=CAGE_peak_1_at_PTPN7_5end | |||
|id=chr1:202129704..202129762,- | |||
|ontology_enrichment_celltype=CL:0000037!2.44e-89!172;CL:0000566!2.44e-89!172;CL:0000988!1.85e-86!182;CL:0002032!9.81e-85!165;CL:0000837!9.81e-85!165;CL:0000738!9.51e-63!140;CL:0002031!2.91e-53!124;CL:0002087!1.62e-50!119;CL:0000763!2.94e-50!112;CL:0000049!2.94e-50!112;CL:0000542!4.11e-29!53;CL:0000051!4.11e-29!53;CL:0000838!1.89e-28!52;CL:0000766!3.95e-27!76;CL:0000557!1.76e-23!71;CL:0000839!2.29e-23!70;CL:0002009!7.12e-20!65;CL:0002194!1.94e-19!63;CL:0000576!1.94e-19!63;CL:0000040!1.94e-19!63;CL:0000559!1.94e-19!63;CL:0002057!1.51e-16!42;CL:0000084!3.19e-16!25;CL:0000827!3.19e-16!25;CL:0000860!2.45e-14!45;CL:0000134!2.87e-14!358;CL:0002320!6.16e-13!365;CL:0000945!1.35e-11!24;CL:0000826!1.35e-11!24;CL:0000791!2.60e-11!18;CL:0000789!2.60e-11!18;CL:0002420!2.60e-11!18;CL:0002419!2.60e-11!18;CL:0000790!2.60e-11!18;CL:0000219!1.72e-09!390;CL:0000625!1.93e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;6.93e-19;53!CL:0000084;1.83e-18;25!CL:0000763;1.08e-17;100!CL:0000988;5.44e-17;177!CL:0002087;2.39e-16;104!CL:0000738;1.40e-15;136!CL:0000860;2.08e-15;33!CL:0002057;2.08e-15;33!CL:0000473;4.46e-15;39!CL:0000234;4.46e-15;39!CL:0000576;1.52e-13;48!CL:0000766;3.08e-13;69!CL:0000945;3.37e-13;24!CL:0000791;8.45e-13;18!CL:0000789;8.45e-13;18!CL:0002419;8.45e-13;18!CL:0000625;2.40e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.49e-106,168;CL:0000988,2.28e-103,177;CL:0002032,9.70e-101,161;CL:0000837,9.70e-101,161;CL:0000738,4.82e-75,136;CL:0002031,5.21e-64,120;CL:0002087,8.13e-61,115;CL:0000763,1.17e-60,108;CL:0000049,1.17e-60,108;CL:0000766,1.82e-33,72;CL:0000542,2.14e-33,53;CL:0000051,2.14e-33,53;CL:0000838,1.25e-32,52;CL:0000557,4.20e-29,67;CL:0000839,5.46e-29,66;CL:0002009,8.61e-25,61;CL:0002194,2.63e-24,59;CL:0000576,2.63e-24,59;CL:0000040,2.63e-24,59;CL:0000559,2.63e-24,59;CL:0000134,2.50e-21,354;CL:0000473,6.36e-20,48;CL:0000234,6.36e-20,48;CL:0002320,6.93e-20,361;CL:0000084,1.71e-18,25;CL:0000827,1.71e-18,25;CL:0000860,2.14e-17,42;CL:0002057,2.14e-17,42;CL:0000219,2.47e-15,386;CL:0000945,3.78e-13,24;CL:0000826,3.78e-13,24;CL:0000791,8.06e-13,18;CL:0000789,8.06e-13,18;CL:0002420,8.06e-13,18;CL:0002419,8.06e-13,18;CL:0000790,8.06e-13,18;CL:0000048,5.70e-10,427;CL:0000034,2.02e-09,441;CL:0000723,3.10e-09,433;CL:0000625,2.36e-08,11;CL:0000236,7.49e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000051;6.93e-19;53!CL:0000049;3.16e-16;108!CL:0002057;4.82e-13;42!CL:0000790;8.45e-13;18 | |||
|ontology_enrichment_disease=DOID:2531!1.29e-30!51;DOID:0060083!1.29e-30!51;DOID:1240!4.14e-29!39;DOID:8692!7.45e-24!31;DOID:1036!4.90e-07!8 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.90e-26;31!DOID:1240;8.71e-26;39!DOID:2531;2.31e-21;51!DOID:0060083;2.31e-21;51!DOID:1036;6.95e-08;8 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.36e-35,51;DOID:0060083,1.36e-35,51;DOID:1240,2.16e-33,39;DOID:8692,2.58e-27,31;DOID:1036,6.90e-08,8 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.12e-29!102;UBERON:0003061!1.12e-29!102;UBERON:0002193!7.06e-26!112;UBERON:0002371!4.93e-20!80;UBERON:0001474!7.82e-17!86;UBERON:0002405!4.55e-14!115;UBERON:0007023!1.31e-13!115;UBERON:0002384!3.45e-12!375;UBERON:0004765!1.33e-11!101;UBERON:0001434!1.33e-11!101;UBERON:0000178!3.26e-08!15;UBERON:0000179!3.26e-08!15;UBERON:0000463!3.26e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.01e-09;15!UBERON:0000179;3.01e-09;15!UBERON:0000463;3.01e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.30e-37,98;UBERON:0003061,6.30e-37,98;UBERON:0002193,6.56e-33,108;UBERON:0002371,2.24e-25,76;UBERON:0002405,6.04e-25,93;UBERON:0001474,8.05e-22,82;UBERON:0002384,3.40e-19,371;UBERON:0004765,6.69e-18,90;UBERON:0001434,5.17e-14,100;UBERON:0000178,3.04e-09,15;UBERON:0000179,3.04e-09,15;UBERON:0000463,3.04e-09,15;UBERON:0003081,7.28e-09,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0,0,0,0,0,0,0,0,0,94.2941426929719,109.275884557878,112.635128059875,68.4453841717093,60.6450448993596,23.2224184974114,0,0,0,68.1711365106654,12.3687232264057,51.6736773229331,21.6058209327432,28.8784004357004,31.6835871245144,5.59788685599811,11.6601719766833,5.6666624879521,19.4833639964617,33.2530830446152,29.5952554649136,24.4050488750969,27.1370806094405,31.8997562021957,33.0846251170473,25.359909946381,27.1954564371873,19.9952494827239,33.565203546359,23.0225027210381,25.4127158382516,38.7526733082141,34.8321400889881,33.0570603760575,60.6555861173817,34.5242047931482,16.4925650093358,17.9517291859469,17.4752147718405,36.5663640672016,43.6886623012178,44.2203796786858,31.4060831570929,21.9022825736485,24.5423394516782,25.4267791106015,29.4622108790052,24.0511414455072,6.76016916198214,2.12604299965044,5.45112478321777,9.77259090974507,4.05477610672067,5.30394436100364,0.570025487482497,0.59675003159727,1.27864907635244,17.5996244461323,11.4689108365048,12.4531295540898,9.38806489646316,12.4122755981164,13.2193061189531,17.8482115651913,7.63243003628291,17.0763890732835,24.0767247642085,16.4377488093848,21.1474125726441,37.5540737197629,39.5076127162616,42.4893103445879,47.9473130553981,56.129209226866,59.6855788544721,33.8959157298934,29.8272117612882,31.1722765452658,106.062754954685,38.004162064254,34.5592875550449,49.5571070689979,127.450863127047,104.697774785702,168.877728027975,157.795860155719,148.668982982082,32.1781842061671,26.4865419808816,31.360657141493,115.348910866122,39.8549313345998,37.111764112124,47.5677020996665,36.6350226472711,29.9498388773953,36.1171776890382,37.1920544122099,43.3874611813478,38.7285252312272,47.8290049128914,41.8775278429734,63.304517372566,69.2670107079284,51.123014570628,0,0,0,0,0,0,0,0,0,0,0.702678285545008,9.95440973782616,0,0,49.9802986228212,67.7364678094149,58.2355867072629,17.8867968229006,9.72391348326217,14.486842551853,0,0,0.694281003215189,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,1.96459402224975,3.14341121676638,4.84229366078286,0,0,0.366403487860815,73.7970337641954,73.6782501881818,0,0,0,0,0,1.06400514659507,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9313088667105,0.590789906681404,112.131627251321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.14029317653452,51.2469340654931,37.1577905721821,0,0,0,0,0,0,417.285762497864,316.886314013601,54.7346225027638,49.1449041151838,51.506912837963,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.72990245129524,3.51579964002488,23.1917333431335,0,0,0,0,0,0,94.8240318185241,59.1092280605782,66.4132930567313,61.8613434868387,0,0,0,0.335032530668698,0,47.9364495326197,29.9161459204025,39.3694737764234,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,31.221971944556,32.7885585244298,46.106304971088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0.680374821106063,0.215915916102139,1.54227252690289,0,0,0,0,0,19.7333888981341,21.9605778860916,0,0,0,2.47298427954533,0,0,0,0,0,0,0,0,0,0,0,0.681813019328807,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78841148289775,0,0,0,0,0,0.422215270595328,0,0,0,0,0.670302275535787,0,2.91845782408015,0,0,0,0,25.8798280708406,16.8220185571323,24.494829048489,35.7347663186683,27.1499100236888,18.8057260245888,21.6012574895246,17.4487538784739,0,2.88743956579008,0,64.102095418373,22.361728011349,83.2359567176445,77.3217422734788,95.798098287752,67.6013956567254,138.646196684143,68.4952293979312,103.333361545753,88.5550554648786,122.83703828605,65.1649640434175,73.6419233436974,133.288102336071,101.908852131479,68.9870905058329,136.715127212794,137.029380881572,128.390085930247,150.831624107565,107.658840566524,397.564016322406,65.2363214422875,69.2366536898517,177.527358942838,112.78960407028,0,4.9812780952444,0,37.6678638857877,0,0.23874448473769,0.296964680832639,0,0,0.703347082052564,0,154.256426276247,0,3.58646378851925,57.7433383460099,0,0.409074730008619,41.6026642458415,0,0,0,57.8076778356365,0.986434056369336,9.57932369387759,0,0,1.29875337426592,0,0,0,0.724999575434793,0,0,0,0,0.291604613383254,0,3.54296554325536,0.361789315876224,0,0.110579259931225,0,0.658156191461918,0,0,1.46205491157214,0,0,0,0,0,0.183195186803725,1.06606955203727,174.750539914709,318.198979712715,165.713046854456,48.728662693311,66.8573242023492,89.2810842711483,20.493403134212,161.797437402026,0,0.489698424477443,0,0,6.96683351754953,4.42287822516696,8.55442202907076,70.572028625988,112.196056563425,111.835907920343,1.21322039365219,1.60515529459758,1.63985112007737,17.1507501862726,0,0,0.394584402849391,7.25944296291983,2.44858209304392,7.58238955541856,0.150323419414493,0,0,0,0,0,1.13843818411917,0,0,0.0979923974143777,0,1.04836000945218,0,0,0,0,3.29762656060626,0,0.90392296312213,0,0,0.189932387867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| |||
|short_description=p1@PTPN7 | |||
}} |
Revision as of 23:23, 10 January 2014
Short description: | p1@PTPN7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTPN7_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000308986, ENST00000435759, ENST00000462815, ENST00000464870, ENST00000467283, ENST00000468385, ENST00000476061, ENST00000479092, ENST00000480836, ENST00000486116, ENST00000491584, ENST00000495688, ENST00000496197, ENST00000543735, ENST00000544762, uc001gxm.1, uc001gxn.1, uc010ppv.1, uc010ppw.1, uc010ppy.1_5end |
EntrezGene: | PTPN7 |
HGNC: | 9659 |
UniProt: | P35236C9JAW7F8WF66E7EUM0C9IYI6F8WEY3E9PE54F8WF08B4DDG6B4DX06 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.30e-37 | 98 |
blood island | 6.30e-37 | 98 |
hemolymphoid system | 6.56e-33 | 108 |
bone marrow | 2.24e-25 | 76 |
immune system | 6.04e-25 | 93 |
bone element | 8.05e-22 | 82 |
connective tissue | 3.40e-19 | 371 |
skeletal element | 6.69e-18 | 90 |
skeletal system | 5.17e-14 | 100 |
blood | 3.04e-09 | 15 |
haemolymphatic fluid | 3.04e-09 | 15 |
organism substance | 3.04e-09 | 15 |
lateral plate mesoderm | 7.28e-09 | 203 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.36e-35 | 51 |
immune system cancer | 1.36e-35 | 51 |
leukemia | 2.16e-33 | 39 |
myeloid leukemia | 2.58e-27 | 31 |
chronic leukemia | 6.90e-08 | 8 |