FFCP PHASE1:Hg19::chr1:182992639..182992662,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3915 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6492 | |||
|TSSclassifier=strong | |||
|UniProt=P11047 | |||
|association_with_transcript=42bp_to_ENST00000258341_5end | |||
|coexpression_cluster_id=C1253 | |||
|description=CAGE_peak_4_at_LAMC1_5end | |||
|id=chr1:182992639..182992662,+ | |||
|ontology_enrichment_celltype=CL:0000055!9.41e-34!180;CL:0000222!4.25e-30!119;CL:0002321!1.50e-24!248;CL:0000220!2.18e-24!246;CL:0000680!6.80e-21!57;CL:0000056!6.80e-21!57;CL:0000355!6.80e-21!57;CL:0000187!3.05e-20!54;CL:0000393!8.15e-20!60;CL:0000211!8.15e-20!60;CL:0000183!8.68e-20!59;CL:0000057!1.15e-15!75;CL:0000192!1.19e-15!42;CL:0000514!1.19e-15!42;CL:0000359!6.34e-14!32;CL:0000213!6.58e-10!57;CL:0000215!6.58e-10!57;CL:0002494!1.42e-09!16;CL:0000144!1.96e-09!625;CL:0002139!2.09e-08!24;CL:0002078!4.46e-08!44;CL:0000548!1.55e-07!679;CL:0000004!1.55e-07!679;CL:0000255!1.55e-07!679;CL:0000115!3.56e-07!35;CL:0002371!6.75e-07!591;CL:0000012!7.17e-07!682;CL:0002334!8.29e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.57e-13;32!CL:0000192;2.85e-12;43!CL:0000187;7.68e-12;55!CL:0000393;3.91e-11;61!CL:0000211;3.91e-11;61!CL:0002494;2.96e-10;16!CL:0002139;6.52e-09;24!CL:0000723;1.87e-07;61!CL:0000048;2.10e-07;58!CL:0002334;3.05e-07;12!CL:0000134;4.21e-07;55!CL:0000115;5.97e-07;36!CL:0000057;7.19e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.65e-32,121;CL:0002321,2.64e-23,250;CL:0000680,1.77e-22,58;CL:0000056,1.77e-22,58;CL:0000355,1.77e-22,58;CL:0000187,8.95e-22,55;CL:0000393,2.49e-21,61;CL:0000211,2.49e-21,61;CL:0000192,7.74e-17,43;CL:0000514,7.74e-17,43;CL:0000057,1.61e-16,76;CL:0000359,2.20e-14,32;CL:0000213,7.00e-11,58;CL:0000215,7.00e-11,58;CL:0002494,3.65e-10,16;CL:0002139,6.57e-09,24;CL:0002078,1.23e-08,45;CL:0000115,5.96e-08,36;CL:0002334,3.39e-07,12;CL:0000048,9.66e-07,427 | |||
|ontology_enrichment_development_v019=CL:0000514;2.85e-12;43!CL:0000355;4.12e-12;58!CL:0000222;3.30e-08;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!7.91e-26!79;UBERON:0007798!7.91e-26!79;UBERON:0004872!1.54e-25!84;UBERON:0004290!1.74e-22!70;UBERON:0000055!4.78e-22!69;UBERON:0003914!7.16e-22!118;UBERON:0000914!1.27e-21!83;UBERON:0002329!1.27e-21!83;UBERON:0003077!1.27e-21!83;UBERON:0003059!1.27e-21!83;UBERON:0007282!1.27e-21!83;UBERON:0009618!1.27e-21!83;UBERON:0007285!1.27e-21!83;UBERON:0001134!1.89e-21!61;UBERON:0002036!1.89e-21!61;UBERON:0003082!1.89e-21!61;UBERON:0001009!3.53e-21!113;UBERON:0000486!3.68e-21!82;UBERON:0004535!4.75e-21!110;UBERON:0002385!1.35e-20!63;UBERON:0001015!1.35e-20!63;UBERON:0000383!1.35e-20!63;UBERON:0001981!4.58e-20!60;UBERON:0007500!4.58e-20!60;UBERON:0004537!4.58e-20!60;UBERON:0006965!4.58e-20!60;UBERON:0000490!6.07e-20!138;UBERON:0005256!9.91e-19!143;UBERON:0001637!1.48e-18!42;UBERON:0003509!1.48e-18!42;UBERON:0004572!1.48e-18!42;UBERON:0002100!1.48e-18!216;UBERON:0004573!7.83e-16!33;UBERON:0004571!7.83e-16!33;UBERON:0000119!1.28e-13!312;UBERON:0003104!3.55e-13!238;UBERON:0009142!3.55e-13!238;UBERON:0000483!6.32e-13!309;UBERON:0000468!8.19e-12!659;UBERON:0000475!2.35e-11!365;UBERON:0000948!2.70e-10!24;UBERON:0005498!2.70e-10!24;UBERON:0004140!2.70e-10!24;UBERON:0009881!2.70e-10!24;UBERON:0004141!2.70e-10!24;UBERON:0003084!2.70e-10!24;UBERON:0007005!2.70e-10!24;UBERON:0004139!2.70e-10!24;UBERON:0004291!2.70e-10!24;UBERON:0007100!4.37e-10!27;UBERON:0000481!6.66e-10!347;UBERON:0000947!3.73e-09!21;UBERON:0010191!3.73e-09!21;UBERON:0000467!6.00e-09!625;UBERON:0000926!6.18e-09!448;UBERON:0004120!6.18e-09!448;UBERON:0006603!6.18e-09!448;UBERON:0000480!1.03e-08!626;UBERON:0000477!1.14e-08!286;UBERON:0004111!1.05e-07!241;UBERON:0003103!1.48e-07!69;UBERON:0006914!3.45e-07!25;UBERON:0001013!6.89e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.00e-15;33!UBERON:0004571;3.00e-15;33!UBERON:0001637;9.45e-15;42!UBERON:0003509;9.45e-15;42!UBERON:0004572;9.45e-15;42!UBERON:0000055;9.67e-12;65!UBERON:0007500;1.88e-11;56!UBERON:0001981;1.88e-11;56!UBERON:0004537;1.88e-11;56!UBERON:0002049;3.77e-11;75!UBERON:0007798;3.77e-11;75!UBERON:0000948;2.58e-10;22!UBERON:0007100;6.26e-10;25!UBERON:0000947;2.28e-09;21!UBERON:0010191;2.28e-09;21!UBERON:0002385;3.68e-09;31!UBERON:0001015;3.68e-09;31!UBERON:0000383;3.68e-09;31!UBERON:0003914;1.83e-08;74!UBERON:0006914;1.34e-07;25!UBERON:0001013;3.19e-07;14!UBERON:0004535;4.53e-07;109!UBERON:0001009;7.71e-07;112!UBERON:0000487;8.47e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,5.59e-27,78;UBERON:0007798,5.59e-27,78;UBERON:0004872,5.74e-26,83;UBERON:0007503,6.51e-24,78;UBERON:0002329,7.31e-24,71;UBERON:0003059,7.31e-24,71;UBERON:0007282,7.31e-24,71;UBERON:0004290,7.31e-24,71;UBERON:0009618,7.31e-24,71;UBERON:0001009,1.61e-23,112;UBERON:0007524,1.91e-23,73;UBERON:0004535,2.17e-23,109;UBERON:0000055,3.89e-23,68;UBERON:0001134,4.42e-23,62;UBERON:0002036,4.42e-23,62;UBERON:0003082,4.42e-23,62;UBERON:0003077,4.89e-23,72;UBERON:0007285,4.89e-23,72;UBERON:0003914,6.18e-22,117;UBERON:0002385,7.81e-22,64;UBERON:0001015,7.81e-22,64;UBERON:0000383,7.81e-22,64;UBERON:0000490,8.91e-22,148;UBERON:0000486,2.71e-21,83;UBERON:0007500,8.31e-21,59;UBERON:0001981,8.31e-21,59;UBERON:0004537,8.31e-21,59;UBERON:0006965,8.31e-21,59;UBERON:0001637,2.40e-19,42;UBERON:0003509,2.40e-19,42;UBERON:0004572,2.40e-19,42;UBERON:0003104,1.19e-18,160;UBERON:0009142,1.19e-18,160;UBERON:0005256,2.69e-18,122;UBERON:0004573,2.08e-16,33;UBERON:0004571,2.08e-16,33;UBERON:0002100,2.85e-16,199;UBERON:0000926,4.02e-12,315;UBERON:0004120,4.02e-12,315;UBERON:0006603,4.02e-12,315;UBERON:0000948,6.15e-11,24;UBERON:0005498,6.15e-11,24;UBERON:0004140,6.15e-11,24;UBERON:0009881,6.15e-11,24;UBERON:0004141,6.15e-11,24;UBERON:0003084,6.15e-11,24;UBERON:0007005,6.15e-11,24;UBERON:0004139,6.15e-11,24;UBERON:0004291,6.15e-11,24;UBERON:0007100,1.03e-10,27;UBERON:0000119,1.93e-10,309;UBERON:0000483,8.13e-10,306;UBERON:0000947,2.78e-09,21;UBERON:0010191,2.78e-09,21;UBERON:0006914,1.32e-07,25;UBERON:0001013,2.78e-07,14;UBERON:0003103,3.38e-07,68;UBERON:0000487,8.09e-07,22 | |||
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| |||
|short_description=p4@LAMC1 | |||
}} |
Revision as of 22:38, 10 January 2014
Short description: | p4@LAMC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LAMC1_5end |
Coexpression cluster: | C1253_Fibroblast_Smooth_Cardiac_Mesenchymal_Adipocyte_mesenchymal_Wilms |
Association with transcript: | 42bp_to_ENST00000258341_5end |
EntrezGene: | LAMC1 |
HGNC: | 6492 |
UniProt: | P11047 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.65e-32 | 121 |
embryonic cell | 2.64e-23 | 250 |
muscle precursor cell | 1.77e-22 | 58 |
myoblast | 1.77e-22 | 58 |
multi-potent skeletal muscle stem cell | 1.77e-22 | 58 |
muscle cell | 8.95e-22 | 55 |
electrically responsive cell | 2.49e-21 | 61 |
electrically active cell | 2.49e-21 | 61 |
smooth muscle cell | 7.74e-17 | 43 |
smooth muscle myoblast | 7.74e-17 | 43 |
fibroblast | 1.61e-16 | 76 |
vascular associated smooth muscle cell | 2.20e-14 | 32 |
lining cell | 7.00e-11 | 58 |
barrier cell | 7.00e-11 | 58 |
cardiocyte | 3.65e-10 | 16 |
endothelial cell of vascular tree | 6.57e-09 | 24 |
meso-epithelial cell | 1.23e-08 | 45 |
endothelial cell | 5.96e-08 | 36 |
preadipocyte | 3.39e-07 | 12 |
multi fate stem cell | 9.66e-07 | 427 |