FFCP PHASE1:Hg19::chr1:160313025..160313072,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1314 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2230 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000368069,ENST00000541366_5end | |||
|coexpression_cluster_id=C1465 | |||
|description=CAGE_peak_1_at_COPA_5end | |||
|id=chr1:160313025..160313072,- | |||
|ontology_enrichment_celltype=CL:0000055!1.74e-21!180;CL:0000680!3.23e-15!57;CL:0000056!3.23e-15!57;CL:0000355!3.23e-15!57;CL:0000187!1.41e-14!54;CL:0000359!1.48e-13!32;CL:0000192!1.30e-12!42;CL:0000514!1.30e-12!42;CL:0000057!3.61e-12!75;CL:0000723!1.93e-11!436;CL:0000048!1.98e-11!430;CL:0000183!1.41e-10!59;CL:0000548!1.68e-10!679;CL:0000004!1.68e-10!679;CL:0000255!1.68e-10!679;CL:0000034!1.74e-10!444;CL:0000393!1.83e-10!60;CL:0000211!1.83e-10!60;CL:0000012!2.78e-10!682;CL:0002620!1.78e-09!23;CL:0000222!1.28e-08!119;CL:0000144!1.90e-08!625;CL:0002371!8.70e-08!591 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.23e-12;32!CL:0002620;1.88e-09;23!CL:0000192;5.21e-09;43!CL:0000187;9.67e-08;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,4.60e-15,58;CL:0000056,4.60e-15,58;CL:0000355,4.60e-15,58;CL:0000187,2.02e-14,55;CL:0000359,1.48e-13,32;CL:0000192,1.94e-12,43;CL:0000514,1.94e-12,43;CL:0000057,2.45e-12,76;CL:0000723,2.99e-12,433;CL:0000048,3.07e-12,427;CL:0000034,2.97e-11,441;CL:0000393,2.22e-10,61;CL:0000211,2.22e-10,61;CL:0002620,1.78e-09,23;CL:0000222,3.00e-08,121 | |||
|ontology_enrichment_development_v019=CL:0000514;5.21e-09;43!CL:0000355;7.00e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.10e-17!83;UBERON:0002329!1.10e-17!83;UBERON:0003077!1.10e-17!83;UBERON:0003059!1.10e-17!83;UBERON:0007282!1.10e-17!83;UBERON:0009618!1.10e-17!83;UBERON:0007285!1.10e-17!83;UBERON:0004290!1.95e-15!70;UBERON:0001134!1.10e-13!61;UBERON:0002036!1.10e-13!61;UBERON:0003082!1.10e-13!61;UBERON:0000486!1.25e-12!82;UBERON:0002385!1.38e-12!63;UBERON:0001015!1.38e-12!63;UBERON:0000383!1.38e-12!63;UBERON:0001637!7.26e-12!42;UBERON:0003509!7.26e-12!42;UBERON:0004572!7.26e-12!42;UBERON:0004872!1.74e-10!84;UBERON:0004573!7.91e-10!33;UBERON:0004571!7.91e-10!33;UBERON:0002049!2.63e-09!79;UBERON:0007798!2.63e-09!79;UBERON:0002204!4.22e-09!167;UBERON:0001981!8.69e-09!60;UBERON:0007500!8.69e-09!60;UBERON:0004537!8.69e-09!60;UBERON:0006965!8.69e-09!60;UBERON:0002199!9.44e-09!45;UBERON:0002416!9.44e-09!45;UBERON:0000055!1.18e-08!69;UBERON:0002097!1.21e-08!40;UBERON:0000490!1.30e-08!138;UBERON:0004535!1.91e-07!110;UBERON:0000468!1.94e-07!659;UBERON:0000480!9.38e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;6.52e-09;33!UBERON:0004571;6.52e-09;33!UBERON:0001637;1.39e-08;42!UBERON:0003509;1.39e-08;42!UBERON:0004572;1.39e-08;42!UBERON:0002097;6.30e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,2.57e-15,71;UBERON:0003059,2.57e-15,71;UBERON:0007282,2.57e-15,71;UBERON:0004290,2.57e-15,71;UBERON:0009618,2.57e-15,71;UBERON:0007524,3.75e-15,73;UBERON:0003077,4.96e-15,72;UBERON:0007285,4.96e-15,72;UBERON:0001134,1.46e-13,62;UBERON:0002036,1.46e-13,62;UBERON:0003082,1.46e-13,62;UBERON:0000486,1.47e-12,83;UBERON:0002385,1.75e-12,64;UBERON:0001015,1.75e-12,64;UBERON:0000383,1.75e-12,64;UBERON:0001637,7.26e-12,42;UBERON:0003509,7.26e-12,42;UBERON:0004572,7.26e-12,42;UBERON:0007503,1.19e-10,78;UBERON:0004872,2.55e-10,83;UBERON:0002204,2.68e-10,167;UBERON:0000490,4.49e-10,148;UBERON:0004573,7.91e-10,33;UBERON:0004571,7.91e-10,33;UBERON:0002049,3.81e-09,78;UBERON:0007798,3.81e-09,78;UBERON:0002199,4.63e-09,46;UBERON:0002416,4.63e-09,46;UBERON:0002097,5.85e-09,41;UBERON:0007500,1.26e-08,59;UBERON:0001981,1.26e-08,59;UBERON:0004537,1.26e-08,59;UBERON:0006965,1.26e-08,59;UBERON:0000055,1.70e-08,68;UBERON:0000926,7.94e-08,315;UBERON:0004120,7.94e-08,315;UBERON:0006603,7.94e-08,315;UBERON:0004535,2.64e-07,109 | |||
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| |||
|short_description=p1@COPA | |||
}} |
Revision as of 21:46, 10 January 2014
Short description: | p1@COPA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COPA_5end |
Coexpression cluster: | C1465_Mast_Preadipocyte_Fibroblast_Smooth_Chondrocyte_basal_Osteoblast |
Association with transcript: | 0bp_to_ENST00000368069, ENST00000541366_5end |
EntrezGene: | COPA |
HGNC: | 2230 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 4.60e-15 | 58 |
myoblast | 4.60e-15 | 58 |
multi-potent skeletal muscle stem cell | 4.60e-15 | 58 |
muscle cell | 2.02e-14 | 55 |
vascular associated smooth muscle cell | 1.48e-13 | 32 |
smooth muscle cell | 1.94e-12 | 43 |
smooth muscle myoblast | 1.94e-12 | 43 |
fibroblast | 2.45e-12 | 76 |
somatic stem cell | 2.99e-12 | 433 |
multi fate stem cell | 3.07e-12 | 427 |
stem cell | 2.97e-11 | 441 |
electrically responsive cell | 2.22e-10 | 61 |
electrically active cell | 2.22e-10 | 61 |
skin fibroblast | 1.78e-09 | 23 |
mesodermal cell | 3.00e-08 | 121 |