FFCP PHASE1:Hg19::chr1:155826967..155827018,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54856 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25973 | |||
|TSSclassifier=strong | |||
|UniProt=Q3T8J9,Q6PHZ4 | |||
|association_with_transcript=0bp_to_ENST00000361040,ENST00000368331,ENST00000471341,NM_001037533,NM_032292,uc001fly.1,uc001flz.2,uc001fmc.2,uc001fmd.3,uc009wrh.1,uc009wri.2_5end | |||
|coexpression_cluster_id=C986 | |||
|description=CAGE_peak_1_at_GON4L_5end | |||
|id=chr1:155826967..155827018,- | |||
|ontology_enrichment_celltype=CL:0000738!2.65e-17!140;CL:0000037!1.10e-15!172;CL:0000566!1.10e-15!172;CL:0002032!8.31e-15!165;CL:0000837!8.31e-15!165;CL:0000988!2.89e-13!182;CL:0002031!6.16e-13!124;CL:0002087!3.29e-12!119;CL:0000542!6.83e-10!53;CL:0000051!6.83e-10!53;CL:0000838!1.05e-09!52;CL:0000791!4.99e-08!18;CL:0000789!4.99e-08!18;CL:0002420!4.99e-08!18;CL:0002419!4.99e-08!18;CL:0000790!4.99e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.84e-08;18!CL:0000789;4.84e-08;18!CL:0002419;4.84e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.40e-17,136;CL:0000037,1.61e-15,168;CL:0002032,1.20e-14,161;CL:0000837,1.20e-14,161;CL:0000988,1.41e-13,177;CL:0002031,8.08e-13,120;CL:0002087,4.30e-12,115;CL:0000542,6.83e-10,53;CL:0000051,6.83e-10,53;CL:0000838,1.05e-09,52;CL:0000791,4.99e-08,18;CL:0000789,4.99e-08,18;CL:0002420,4.99e-08,18;CL:0002419,4.99e-08,18;CL:0000790,4.99e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000790;4.84e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.46e-18!115;UBERON:0001049!6.36e-09!57;UBERON:0005068!6.36e-09!57;UBERON:0006241!6.36e-09!57;UBERON:0007135!6.36e-09!57;UBERON:0002780!8.86e-09!41;UBERON:0001890!8.86e-09!41;UBERON:0006240!8.86e-09!41;UBERON:0003080!3.36e-08!42;UBERON:0000955!6.09e-08!69;UBERON:0006238!6.09e-08!69;UBERON:0001017!7.19e-08!82;UBERON:0002390!1.37e-07!102;UBERON:0003061!1.37e-07!102;UBERON:0005743!2.51e-07!86;UBERON:0001893!2.97e-07!34;UBERON:0002020!3.06e-07!34;UBERON:0003528!3.06e-07!34;UBERON:0000073!3.28e-07!94;UBERON:0001016!3.28e-07!94;UBERON:0002791!5.04e-07!33;UBERON:0001869!5.95e-07!32;UBERON:0002193!7.09e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.67e-18,114;UBERON:0001049,1.97e-09,56;UBERON:0005068,1.97e-09,56;UBERON:0006241,1.97e-09,56;UBERON:0007135,1.97e-09,56;UBERON:0000073,8.79e-09,53;UBERON:0002616,8.79e-09,53;UBERON:0002780,8.86e-09,41;UBERON:0001890,8.86e-09,41;UBERON:0003080,8.86e-09,41;UBERON:0006240,8.86e-09,41;UBERON:0000955,2.36e-08,68;UBERON:0006238,2.36e-08,68;UBERON:0001017,3.06e-08,81;UBERON:0001016,4.73e-08,89;UBERON:0002390,1.86e-07,98;UBERON:0003061,1.86e-07,98;UBERON:0001893,2.97e-07,34;UBERON:0003528,3.06e-07,34;UBERON:0002020,3.06e-07,34;UBERON:0001869,5.95e-07,32;UBERON:0002791,7.64e-07,32;UBERON:0002193,9.86e-07,108 | |||
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| |||
|short_description=p1@GON4L | |||
}} |
Revision as of 21:18, 10 January 2014
Short description: | p1@GON4L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GON4L_5end |
Coexpression cluster: | C986_cerebellum_CD4_granulocyte_Mast_pineal_non_pituitary |
Association with transcript: | 0bp_to_ENST00000361040, ENST00000368331, ENST00000471341, NM_001037533, NM_032292, uc001fly.1, uc001flz.2, uc001fmc.2, uc001fmd.3, uc009wrh.1, uc009wri.2_5end |
EntrezGene: | GON4L |
HGNC: | 25973 |
UniProt: | Q3T8J9Q6PHZ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.40e-17 | 136 |
hematopoietic stem cell | 1.61e-15 | 168 |
hematopoietic oligopotent progenitor cell | 1.20e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.20e-14 | 161 |
hematopoietic cell | 1.41e-13 | 177 |
hematopoietic lineage restricted progenitor cell | 8.08e-13 | 120 |
nongranular leukocyte | 4.30e-12 | 115 |
lymphocyte | 6.83e-10 | 53 |
common lymphoid progenitor | 6.83e-10 | 53 |
lymphoid lineage restricted progenitor cell | 1.05e-09 | 52 |
mature alpha-beta T cell | 4.99e-08 | 18 |
alpha-beta T cell | 4.99e-08 | 18 |
immature T cell | 4.99e-08 | 18 |
mature T cell | 4.99e-08 | 18 |
immature alpha-beta T cell | 4.99e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.67e-18 | 114 |
neural tube | 1.97e-09 | 56 |
neural rod | 1.97e-09 | 56 |
future spinal cord | 1.97e-09 | 56 |
neural keel | 1.97e-09 | 56 |
regional part of nervous system | 8.79e-09 | 53 |
regional part of brain | 8.79e-09 | 53 |
regional part of forebrain | 8.86e-09 | 41 |
forebrain | 8.86e-09 | 41 |
anterior neural tube | 8.86e-09 | 41 |
future forebrain | 8.86e-09 | 41 |
brain | 2.36e-08 | 68 |
future brain | 2.36e-08 | 68 |
central nervous system | 3.06e-08 | 81 |
nervous system | 4.73e-08 | 89 |
hematopoietic system | 1.86e-07 | 98 |
blood island | 1.86e-07 | 98 |
telencephalon | 2.97e-07 | 34 |
brain grey matter | 3.06e-07 | 34 |
gray matter | 3.06e-07 | 34 |
cerebral hemisphere | 5.95e-07 | 32 |
regional part of telencephalon | 7.64e-07 | 32 |
hemolymphoid system | 9.86e-07 | 108 |