FFCP PHASE1:Hg19::chr1:54872059..54872122,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15674 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BWW4 | |||
|association_with_transcript=0bp_to_ENST00000371320,NM_001009955,uc001cxe.2,uc001cxf.2,uc001cxg.2_5end | |||
|description=CAGE_peak_1_at_SSBP3_5end | |||
|id=chr1:54872059..54872122,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.08e-35!115;UBERON:0001049!4.86e-15!57;UBERON:0005068!4.86e-15!57;UBERON:0006241!4.86e-15!57;UBERON:0007135!4.86e-15!57;UBERON:0002616!7.30e-14!59;UBERON:0003075!1.07e-13!86;UBERON:0007284!1.07e-13!86;UBERON:0001017!1.45e-13!82;UBERON:0000955!5.45e-13!69;UBERON:0006238!5.45e-13!69;UBERON:0005743!7.27e-13!86;UBERON:0002346!8.80e-13!90;UBERON:0002619!1.19e-12!22;UBERON:0000073!1.79e-12!94;UBERON:0001016!1.79e-12!94;UBERON:0002780!2.55e-12!41;UBERON:0001890!2.55e-12!41;UBERON:0006240!2.55e-12!41;UBERON:0001893!2.66e-12!34;UBERON:0003080!3.28e-12!42;UBERON:0001950!3.56e-12!20;UBERON:0002020!8.96e-12!34;UBERON:0003528!8.96e-12!34;UBERON:0002791!1.02e-11!33;UBERON:0001869!1.07e-11!32;UBERON:0003056!1.43e-10!61;UBERON:0000956!6.06e-10!25;UBERON:0000203!6.06e-10!25;UBERON:0000178!3.53e-07!15;UBERON:0000179!3.53e-07!15;UBERON:0000463!3.53e-07!15;UBERON:0000153!6.26e-07!129;UBERON:0007811!6.26e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.13e-12;22!UBERON:0001950;3.43e-12;20!UBERON:0001893;1.00e-10;34!UBERON:0001869;1.76e-10;32!UBERON:0002791;3.29e-10;32!UBERON:0003528;4.37e-10;34!UBERON:0002020;4.37e-10;34!UBERON:0000956;5.75e-10;25!UBERON:0000203;5.75e-10;25!UBERON:0007023;7.88e-10;114!UBERON:0002780;2.92e-09;41!UBERON:0001890;2.92e-09;41!UBERON:0000073;5.74e-09;53!UBERON:0002616;5.74e-09;53!UBERON:0000178;3.58e-07;15!UBERON:0000179;3.58e-07;15!UBERON:0000463;3.58e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.94e-35,114;UBERON:0001049,3.92e-15,56;UBERON:0005068,3.92e-15,56;UBERON:0006241,3.92e-15,56;UBERON:0007135,3.92e-15,56;UBERON:0000073,8.85e-15,53;UBERON:0002616,8.85e-15,53;UBERON:0003075,2.83e-14,82;UBERON:0007284,2.83e-14,82;UBERON:0001017,1.35e-13,81;UBERON:0002346,2.71e-13,86;UBERON:0001016,4.12e-13,89;UBERON:0000955,4.93e-13,68;UBERON:0006238,4.93e-13,68;UBERON:0002619,1.19e-12,22;UBERON:0002780,2.55e-12,41;UBERON:0001890,2.55e-12,41;UBERON:0003080,2.55e-12,41;UBERON:0006240,2.55e-12,41;UBERON:0001893,2.66e-12,34;UBERON:0001950,3.56e-12,20;UBERON:0003528,8.96e-12,34;UBERON:0002020,8.96e-12,34;UBERON:0001869,1.07e-11,32;UBERON:0002791,2.24e-11,32;UBERON:0003056,5.70e-11,61;UBERON:0000956,6.06e-10,25;UBERON:0000203,6.06e-10,25;UBERON:0010371,5.55e-09,104;UBERON:0000178,3.53e-07,15;UBERON:0000179,3.53e-07,15;UBERON:0000463,3.53e-07,15;UBERON:0010314,5.88e-07,132 | |||
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| |||
|short_description=p1@SSBP3 | |||
}} |
Revision as of 18:37, 10 January 2014
Short description: | p1@SSBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SSBP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000371320, NM_001009955, uc001cxe.2, uc001cxf.2, uc001cxg.2_5end |
EntrezGene: | SSBP3 |
HGNC: | 15674 |
UniProt: | Q9BWW4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 4.94e-35 | 114 |
neural tube | 3.92e-15 | 56 |
neural rod | 3.92e-15 | 56 |
future spinal cord | 3.92e-15 | 56 |
neural keel | 3.92e-15 | 56 |
regional part of nervous system | 8.85e-15 | 53 |
regional part of brain | 8.85e-15 | 53 |
neural plate | 2.83e-14 | 82 |
presumptive neural plate | 2.83e-14 | 82 |
central nervous system | 1.35e-13 | 81 |
neurectoderm | 2.71e-13 | 86 |
nervous system | 4.12e-13 | 89 |
brain | 4.93e-13 | 68 |
future brain | 4.93e-13 | 68 |
regional part of cerebral cortex | 1.19e-12 | 22 |
regional part of forebrain | 2.55e-12 | 41 |
forebrain | 2.55e-12 | 41 |
anterior neural tube | 2.55e-12 | 41 |
future forebrain | 2.55e-12 | 41 |
telencephalon | 2.66e-12 | 34 |
neocortex | 3.56e-12 | 20 |
brain grey matter | 8.96e-12 | 34 |
gray matter | 8.96e-12 | 34 |
cerebral hemisphere | 1.07e-11 | 32 |
regional part of telencephalon | 2.24e-11 | 32 |
pre-chordal neural plate | 5.70e-11 | 61 |
cerebral cortex | 6.06e-10 | 25 |
pallium | 6.06e-10 | 25 |
ecto-epithelium | 5.55e-09 | 104 |
blood | 3.53e-07 | 15 |
haemolymphatic fluid | 3.53e-07 | 15 |
organism substance | 3.53e-07 | 15 |
structure with developmental contribution from neural crest | 5.88e-07 | 132 |