FFCP PHASE1:Hg19::chr1:19981535..19981580,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=4681 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7650 | |||
|TSSclassifier=strong | |||
|UniProt=P41271 | |||
|association_with_transcript=8bp_to_AB463925,BT019423_5end | |||
|coexpression_cluster_id=C315 | |||
|description=CAGE_peak_4_at_NBL1_5end | |||
|id=chr1:19981535..19981580,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.48e-14!180;CL:0000183!5.64e-11!59;CL:0000192!2.20e-10!42;CL:0000514!2.20e-10!42;CL:0000359!1.06e-09!32;CL:0000187!1.88e-09!54;CL:0000680!2.57e-09!57;CL:0000056!2.57e-09!57;CL:0000355!2.57e-09!57;CL:0000393!3.62e-08!60;CL:0000211!3.62e-08!60;CL:0000222!3.67e-08!119;CL:0000220!2.37e-07!246;CL:0002321!5.83e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.71e-09;32!CL:0000192;1.32e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.26e-09,32;CL:0000192,1.31e-09,43;CL:0000514,1.31e-09,43;CL:0000136,1.66e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;1.32e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.78e-12!83;UBERON:0002329!4.78e-12!83;UBERON:0003077!4.78e-12!83;UBERON:0003059!4.78e-12!83;UBERON:0007282!4.78e-12!83;UBERON:0009618!4.78e-12!83;UBERON:0007285!4.78e-12!83;UBERON:0000481!1.56e-11!347;UBERON:0000475!4.83e-11!365;UBERON:0004290!6.91e-11!70;UBERON:0000486!5.13e-10!82;UBERON:0000477!6.64e-10!286;UBERON:0002385!1.45e-09!63;UBERON:0001015!1.45e-09!63;UBERON:0000383!1.45e-09!63;UBERON:0001134!7.10e-09!61;UBERON:0002036!7.10e-09!61;UBERON:0003082!7.10e-09!61;UBERON:0005256!9.39e-09!143;UBERON:0003103!2.69e-08!69;UBERON:0002100!9.24e-08!216;UBERON:0000119!9.44e-08!312;UBERON:0001637!1.03e-07!42;UBERON:0003509!1.03e-07!42;UBERON:0004572!1.03e-07!42;UBERON:0000483!1.52e-07!309;UBERON:0002049!1.52e-07!79;UBERON:0007798!1.52e-07!79;UBERON:0004111!1.53e-07!241;UBERON:0003102!2.55e-07!95;UBERON:0000468!5.37e-07!659;UBERON:0004872!8.51e-07!84 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.17e-08,73;UBERON:0007503,1.36e-08,78;UBERON:0003077,2.65e-08,72;UBERON:0007285,2.65e-08,72;UBERON:0002329,6.09e-08,71;UBERON:0003059,6.09e-08,71;UBERON:0007282,6.09e-08,71;UBERON:0004290,6.09e-08,71;UBERON:0009618,6.09e-08,71;UBERON:0004573,2.67e-07,33;UBERON:0004571,2.67e-07,33;UBERON:0000486,3.41e-07,83 | |||
|phase1_expression=3.08853244759946,4.92431204949261,1.9733616573436,2.00146596706261,8.04529969969118,14.8297549097063,10.1319951267324,5.05375898741465,2.87304191019822,0.982935746006035,1.39560233594486,0.436882744260345,0.263766978228454,0.866364470720326,3.64537113300707,4.70627602516243,0.602694528023977,5.11217063271161,2.43966399395253,0.246242116153576,2.44800829493104,2.19418305034661,0.572471974262113,0.273748850145768,0.376627918784408,0,0,0,0,0,0,4.59710612239464,3.614471025339,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0.645484683583826,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0,0,0,0.276350017785848,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,5.36560687762909,0.383587685530591,1.0843174571537,1.50401373190767,2.17269778441236,0,3.40644409211845,0.283604451492204,0.665188192387692,0.263504357079378,1.37528029272598,0,0.741568885568859,0,0,0,0,0,0,0.39752481473341,0,0,1.13061588384802,0.419499436209906,1.6507082516404,0.626984899610432,0.258416759169329,0.71153252537342,0,2.01414658554573,0.760272105718513,0.976248230192678,0.367663080345869,0,0.267899184852239,0,0,0,0,1.46561395144326,0,0,0,0.993943903390637,0.506522046658319,0.132409180813219,3.15520282823695,3.19201543978521,2.24271040056923,1.06748995729705,0.49333509683432,0.311211035399766,0.67355336034844,1.30769522490767,3.02714855289863,6.91411109375999,0.234321431833797,2.18512053781224,0,2.24173020827702,1.64408298101271,1.29498355494505,0.702254033511242,0,0.61417158655884,1.34323515528495,4.75201142912821,4.94533858557114,0,5.03032699271367,0.168336113954066,1.12606667884768,0,0.877955241761676,2.45190236639216,3.15499923703853,0.453728732640084,0.89694817844431,0,0.211931901159562,2.10063767259082,0.92747276314595,0.257640540045629,0.558350568994769,0.337552664482532,0.389748020644795,0.252433774244115,0.644349290496095,7.59736467048416,0.710019185033229,0.403008392910561,0.339121184620975,1.15956511897978,0.545492241181669,0.573609190778008,0,0,0.116193942869518,0.207322110030741,0,0,1.56449532329816,14.1513006402435,8.28809528114883,0,4.33127689001751,0.354920400119532,0.505754070234305,0.723033089650446,0.441175890929576,0.653638332277218,0.474541238222193,0.674156540800822,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0,1.09750285408626,0,0.703702806881416,0.185176890317059,0.651616610620649,2.07986957055916,0,0.115930404975077,0.234817388471643,0.433099343283221,0.925971025153221,0.380508304469197,0,0,0,0,0,0,0.839910640994298,0.283550194484773,0.179117045405697,0.581267877027924,1.91691339582606,0.492663237895943,0.088048434013226,1.03664057770386,0,0.37872730027914,0.761974731506028,0.763976851116555,2.34434894420094,1.71072446022705,1.95372236136315,3.00343057843917,3.71574362419752,0.112131084345361,5.66748089483264,0.2933531432838,0.517086863031111,3.57656445851882,0.845302752556,1.59562869950922,0,0.257207374262142,2.83698264046557,0.532844358032199,0,0,0,0,0,0,2.41151501647669,7.84380112740265,4.39881161201051,0,0,0,1.19812427745791,0,0,0.723906533337896,0.410952645100767,0.179060963239896,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,2.20844685094452,6.00204625271613,1.35632511849868,0.831883446123229,2.14114786556594,1.10391690523754,1.87426263988341,2.10662269809403,65.9481761762356,4.1389228517002,1.32845119707087,1.65932251687533,2.17209036170207,7.44044398358414,15.0983106476777,0,0,0,1.21251028578504,1.66435439510497,0.907170879989041,1.98486246255021,0.153461973288062,3.92924132206303,1.53766979106841,0,0.160853921143607,0,2.31314540703983,3.37367278094941,0.574890092096664,2.07701771673448,3.25389059687886,0.241718899183244,3.40860999515584,2.3941057123333,1.37777337797528,1.63882051206045,4.19598127870157,0.451199612907412,0.693138033939733,1.56869953835371,4.38417673959782,0.422206515571503,1.13733384070897,0.850468526382578,0.647747748306418,3.08454505380579,0.541892875087706,2.00675909541941,0.764628819135115,1.66215201785745,1.56712328305525,0,0,0.256450125116389,0,0,0.9273691048295,0.0915694648183434,0.082509499920588,0,1.95018073810956,0,0.48335359146061,0.924291702687866,0.921022048356777,0.551346289938122,0.429680979473094,0.435050081742686,0.426133137080504,0.0890320356467374,2.64455864577565,0.576570202095319,0,1.92199783625545,2.78907329578371,1.5740617341532,2.0911118104818,0.616067160352178,1.59691809095107,0,0.74129687641568,2.28999818787186,2.97726695487734,2.21465597303108,1.14378116354295,0.255897791311334,2.56763392820352,2.54562598340749,5.49464048139461,0.539617372749944,2.47083326762449,0.589062011728432,0.808729926293264,4.75530963519025,2.94880919367287,0,3.1682753652067,9.50851320810799,0.682499557039929,2.2624869112594,14.6910551606316,1.10273068709225,5.97095077717098,6.13831239355268,0.578775534266688,1.9676842561399,0.405820753925408,0.92947049429925,1.12678241012897,0.286822704408103,0.1964980820262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| |||
|short_description=p4@NBL1 | |||
}} |
Revision as of 16:45, 10 January 2014
Short description: | p4@NBL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_4_at_NBL1_5end |
Coexpression cluster: | C315_Osteoblast_Preadipocyte_mesenchymal_Smooth_Cardiac_leiomyoma_Adipocyte |
Association with transcript: | 8bp_to_AB463925, BT019423_5end |
EntrezGene: | NBL1 |
HGNC: | 7650 |
UniProt: | P41271 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.26e-09 | 32 |
smooth muscle cell | 1.31e-09 | 43 |
smooth muscle myoblast | 1.31e-09 | 43 |
fat cell | 1.66e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.17e-08 | 73 |
epithelial vesicle | 1.36e-08 | 78 |
paraxial mesoderm | 2.65e-08 | 72 |
presumptive paraxial mesoderm | 2.65e-08 | 72 |
somite | 6.09e-08 | 71 |
presomitic mesoderm | 6.09e-08 | 71 |
presumptive segmental plate | 6.09e-08 | 71 |
dermomyotome | 6.09e-08 | 71 |
trunk paraxial mesoderm | 6.09e-08 | 71 |
systemic artery | 2.67e-07 | 33 |
systemic arterial system | 2.67e-07 | 33 |
multilaminar epithelium | 3.41e-07 | 83 |