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MCL coexpression mm9:430: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!1.65e-32!31;UBERON:0000344!1.52e-25!15;UBERON:0001242!4.82e-22!13;UBERON:0000060!4.82e-22!13;UBERON:0001262!4.82e-22!13;UBERON:0004786!4.82e-22!13;UBERON:0005409!5.17e-21!47;UBERON:0001007!1.75e-17!116;UBERON:0001555!1.75e-17!116;UBERON:0007026!1.75e-17!116;UBERON:0004119!5.13e-17!118;UBERON:0000925!5.13e-17!118;UBERON:0006595!5.13e-17!118;UBERON:0004921!1.87e-15!114;UBERON:0003350!8.23e-15!9;UBERON:0004808!8.23e-15!9;UBERON:0001277!8.23e-15!9;UBERON:0004923!1.93e-14!24;UBERON:0000485!8.96e-12!11;UBERON:0002365!7.04e-09!25;UBERON:0002330!7.04e-09!25;UBERON:0002108!1.36e-08!4;UBERON:0003929!6.73e-08!55;UBERON:0009854!4.59e-07!23;UBERON:0009856!4.59e-07!23;UBERON:0000331!8.02e-07!3;UBERON:0002116!8.02e-07!3;UBERON:0001204!8.02e-07!3;UBERON:0001168!8.02e-07!3
|tfbs_overrepresentation_for_novel_motifs=0.162057,1.02741,0.144778,0.191238,0.0790596,0.201606,0.270195,0.962402,0.040605,0.222734,0.236307,0.260789,0.0372188,0.27987,0.0878075,0,1.1241,0.260255,0.562867,0.049362,6.52039,0.178741,0.279154,2.58712,0.149704,0.301898,0.289597,0.216938,0.103721,0.0796386,0.206597,0.531719,0.257084,0.101305,0.0880674,4.83231,0.0693463,0.257981,0.812295,1.539,0.265799,0.210373,0.0688446,0.0888852,0.0114677,0.183361,0.372907,0.228683,1.07561,0.105412,0.426383,0.323798,0.190678,0.661847,0.67813,0.28555,5.40655,0.25091,0.111806,0.283926,0.513661,0.331566,0.045155,0.4166,0.294453,0.451957,0.806865,1.14503,0.509463,1.00145,0.132733,0.635773,0.0300638,0.709559,0.0246496,0.0215675,1.51306,0.363297,0.498264,0.124234,0.155185,0.456892,0.879999,0.0348785,0.602212,0.000691814,0.000980194,0.0797642,0.377064,1.30447,0.873554,0.606796,0.543309,3.31581,0.057338,0.0497835,0.14406,0.545856,0.373124,0.0129514,0.523231,0.531465,0.645628,0.4269,0.425983,0.21005,0.478524,0.225669,0.127231,0.122746,0.157325,0.647285,0.394208,0.240232,0.880323,1.41494,0.00986677,0.193921,0.442771,0.0675617,0.714636,0.398522,0.303371,0.362534,3.5358,0.501574,0.276618,0.53717,0.805419,0.0836776,0.629874,0.186072,5.83628,0.296474,0.9011,1.03574,0.501821,1.14299,0.853868,1.66928,1.27308,0.811357,0.313144,0.541193,0.420352,9.29675,0.375553,1.62988,0.169369,0.0799646,1.77735,0.00366709,0.66331,0.0522757,0.29573,0.739975,0.324625,0.0943424,0.160402,0.167568,0.862985,0.601424,0.501973,0.472328,0.417485,0.289792,0.0688048,0.259556,0.567122
|tfbs_overrepresentation_jaspar=MA0003.1;5.87279e-05,MA0004.1;0.559722,MA0006.1;0.0854592,MA0007.1;0.181021,MA0009.1;0.5557,MA0014.1;0.00134458,MA0017.1;0.328722,MA0019.1;1.80507,MA0024.1;0.516087,MA0025.1;0.773017,MA0027.1;2.16618,MA0028.1;0.304586,MA0029.1;3.17638,MA0030.1;0.502474,MA0031.1;0.470779,MA0038.1;0.301835,MA0040.1;0.567108,MA0041.1;0.140298,MA0042.1;0.131965,MA0043.1;0.644695,MA0046.1;0.58854,MA0048.1;0.0131913,MA0050.1;0.626793,MA0051.1;0.309072,MA0052.1;2.40508,MA0055.1;0.230702,MA0056.1;0,MA0057.1;0.0109462,MA0058.1;0.401421,MA0059.1;0.421089,MA0060.1;0.0476793,MA0061.1;0.060618,MA0063.1;0,MA0066.1;0.293002,MA0067.1;0.879099,MA0068.1;0.0116947,MA0069.1;0.574784,MA0070.1;0.565924,MA0071.1;0.219128,MA0072.1;0.558195,MA0073.1;5.25232e-08,MA0074.1;0.731206,MA0076.1;0.110983,MA0077.1;0.538513,MA0078.1;0.336143,MA0081.1;0.150322,MA0083.1;3.82626,MA0084.1;1.1979,MA0087.1;0.604077,MA0088.1;0.0282169,MA0089.1;0,MA0090.1;0.969034,MA0091.1;0.582275,MA0092.1;0.969912,MA0093.1;0.316906,MA0095.1;0,MA0098.1;0,MA0100.1;0.255651,MA0101.1;0.141127,MA0103.1;0.106139,MA0105.1;0.0222933,MA0106.1;0.342589,MA0107.1;0.102611,MA0108.2;0.413973,MA0109.1;0,MA0111.1;0.177475,MA0113.1;0.319332,MA0114.1;4.23683,MA0115.1;0.647296,MA0116.1;0.08535,MA0117.1;0.617392,MA0119.1;0.141504,MA0122.1;0.635764,MA0124.1;0.828115,MA0125.1;0.757653,MA0130.1;0,MA0131.1;0.390422,MA0132.1;0,MA0133.1;0,MA0135.1;0.67864,MA0136.1;0.280269,MA0139.1;0.0357525,MA0140.1;0.710317,MA0141.1;0.37559,MA0142.1;0.457961,MA0143.1;0.885347,MA0144.1;1.25437,MA0145.1;0.00604759,MA0146.1;0.000279887,MA0147.1;0.0666796,MA0148.1;0.203219,MA0149.1;0.144679,MA0062.2;0.102085,MA0035.2;1.32437,MA0039.2;8.43209e-06,MA0138.2;0.383644,MA0002.2;0.957632,MA0137.2;0.747445,MA0104.2;0.162663,MA0047.2;0.301217,MA0112.2;0.00604704,MA0065.2;2.80049,MA0150.1;0.180943,MA0151.1;0,MA0152.1;0.301303,MA0153.1;0.694211,MA0154.1;0.162966,MA0155.1;0.0080339,MA0156.1;0.356573,MA0157.1;0.429861,MA0158.1;0,MA0159.1;0.0715631,MA0160.1;0.205397,MA0161.1;0,MA0162.1;0.00359771,MA0163.1;0.000347337,MA0164.1;0.280556,MA0080.2;0.103116,MA0018.2;0.288261,MA0099.2;0.37828,MA0079.2;3.90932e-06,MA0102.2;1.24942,MA0258.1;0.197969,MA0259.1;0.221921,MA0442.1;0
}}

Latest revision as of 15:17, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr1:132738123..132738136,+p@chr1:132738123..132738136
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Mm9::chr1:132738269..132738281,+p@chr1:132738269..132738281
+
Mm9::chr1:132744050..132744062,+p@chr1:132744050..132744062
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Mm9::chr1:132745011..132745023,+p@chr1:132745011..132745023
+
Mm9::chr1:132745623..132745656,+p@chr1:132745623..132745656
+
Mm9::chr1:132746149..132746160,+p@chr1:132746149..132746160
+
Mm9::chr1:132747984..132747997,+p@chr1:132747984..132747997
+
Mm9::chr1:132748010..132748021,+p@chr1:132748010..132748021
+
Mm9::chr1:132748036..132748042,+p@chr1:132748036..132748042
+
Mm9::chr1:132748110..132748121,+p@chr1:132748110..132748121
+
Mm9::chr1:132748126..132748133,+p@chr1:132748126..132748133
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Mm9::chr1:132748161..132748177,+p@chr1:132748161..132748177
+
Mm9::chr1:132748202..132748234,+p@chr1:132748202..132748234
+
Mm9::chr1:132748267..132748282,+p@chr1:132748267..132748282
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Mm9::chr1:132748293..132748311,+p@chr1:132748293..132748311
+
Mm9::chr1:132748312..132748340,+p@chr1:132748312..132748340
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Mm9::chr1:132748380..132748400,-p@chr1:132748380..132748400
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Mm9::chr8:46496339..46496357,-p4@Tlr3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine1.65e-3231
mucosa1.52e-2515
intestinal mucosa4.82e-2213
anatomical wall4.82e-2213
wall of intestine4.82e-2213
gastrointestinal system mucosa4.82e-2213
gastrointestinal system5.17e-2147
digestive system1.75e-17116
digestive tract1.75e-17116
primitive gut1.75e-17116
endoderm-derived structure5.13e-17118
endoderm5.13e-17118
presumptive endoderm5.13e-17118
subdivision of digestive tract1.87e-15114
epithelium of mucosa8.23e-159
gastrointestinal system epithelium8.23e-159
intestinal epithelium8.23e-159
organ component layer1.93e-1424
simple columnar epithelium8.96e-1211
exocrine gland7.04e-0925
exocrine system7.04e-0925
small intestine1.36e-084
gut epithelium6.73e-0855
digestive tract diverticulum4.59e-0723
sac4.59e-0723
ileal mucosa8.02e-073
ileum8.02e-073
mucosa of small intestine8.02e-073
wall of small intestine8.02e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.15.87279e-05
MA0004.10.559722
MA0006.10.0854592
MA0007.10.181021
MA0009.10.5557
MA0014.10.00134458
MA0017.10.328722
MA0019.11.80507
MA0024.10.516087
MA0025.10.773017
MA0027.12.16618
MA0028.10.304586
MA0029.13.17638
MA0030.10.502474
MA0031.10.470779
MA0038.10.301835
MA0040.10.567108
MA0041.10.140298
MA0042.10.131965
MA0043.10.644695
MA0046.10.58854
MA0048.10.0131913
MA0050.10.626793
MA0051.10.309072
MA0052.12.40508
MA0055.10.230702
MA0056.10
MA0057.10.0109462
MA0058.10.401421
MA0059.10.421089
MA0060.10.0476793
MA0061.10.060618
MA0063.10
MA0066.10.293002
MA0067.10.879099
MA0068.10.0116947
MA0069.10.574784
MA0070.10.565924
MA0071.10.219128
MA0072.10.558195
MA0073.15.25232e-08
MA0074.10.731206
MA0076.10.110983
MA0077.10.538513
MA0078.10.336143
MA0081.10.150322
MA0083.13.82626
MA0084.11.1979
MA0087.10.604077
MA0088.10.0282169
MA0089.10
MA0090.10.969034
MA0091.10.582275
MA0092.10.969912
MA0093.10.316906
MA0095.10
MA0098.10
MA0100.10.255651
MA0101.10.141127
MA0103.10.106139
MA0105.10.0222933
MA0106.10.342589
MA0107.10.102611
MA0108.20.413973
MA0109.10
MA0111.10.177475
MA0113.10.319332
MA0114.14.23683
MA0115.10.647296
MA0116.10.08535
MA0117.10.617392
MA0119.10.141504
MA0122.10.635764
MA0124.10.828115
MA0125.10.757653
MA0130.10
MA0131.10.390422
MA0132.10
MA0133.10
MA0135.10.67864
MA0136.10.280269
MA0139.10.0357525
MA0140.10.710317
MA0141.10.37559
MA0142.10.457961
MA0143.10.885347
MA0144.11.25437
MA0145.10.00604759
MA0146.10.000279887
MA0147.10.0666796
MA0148.10.203219
MA0149.10.144679
MA0062.20.102085
MA0035.21.32437
MA0039.28.43209e-06
MA0138.20.383644
MA0002.20.957632
MA0137.20.747445
MA0104.20.162663
MA0047.20.301217
MA0112.20.00604704
MA0065.22.80049
MA0150.10.180943
MA0151.10
MA0152.10.301303
MA0153.10.694211
MA0154.10.162966
MA0155.10.0080339
MA0156.10.356573
MA0157.10.429861
MA0158.10
MA0159.10.0715631
MA0160.10.205397
MA0161.10
MA0162.10.00359771
MA0163.10.000347337
MA0164.10.280556
MA0080.20.103116
MA0018.20.288261
MA0099.20.37828
MA0079.23.90932e-06
MA0102.21.24942
MA0258.10.197969
MA0259.10.221921
MA0442.10
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