FFCP PHASE1:Mm9::chrX:45561874..45561885,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=208884|HGNC=|UniProt=B1AVD4,P59268|association_with_transcript=0bp_to_NM_172465,uc009tbx.2_5end|description=CAGE_peak_3_at_Zdhhc9_5end|id=chrX:45561874..45561885,-|ontology_enrichment_celltype=CL:0002321!1.82e-08!70;CL:0000220!1.82e-08!70;CL:0002319!5.05e-08!43;CL:0000221!1.44e-07!44;CL:0000133!1.44e-07!44;CL:0000055!3.23e-07!50;CL:0000117!5.09e-07!23;CL:0000337!5.09e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,4.42e-09,23;CL:0000337,4.42e-09,23;CL:0002321,1.10e-07,70;CL:0002319,2.13e-07,43;CL:0000221,4.71e-07,44;CL:0000133,4.71e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.98e-11!73;UBERON:0005743!6.98e-11!73;UBERON:0000073!1.14e-10!75;UBERON:0001016!1.14e-10!75;UBERON:0004121!1.28e-09!102;UBERON:0000924!1.28e-09!102;UBERON:0006601!1.28e-09!102;UBERON:0002020!6.61e-09!34;UBERON:0002791!1.24e-08!29;UBERON:0003528!1.24e-08!29;UBERON:0001893!1.24e-08!29;UBERON:0001049!1.32e-08!52;UBERON:0005068!1.32e-08!52;UBERON:0006241!1.32e-08!52;UBERON:0007135!1.32e-08!52;UBERON:0002346!3.48e-08!71;UBERON:0003075!3.48e-08!71;UBERON:0007284!3.48e-08!71;UBERON:0000033!5.15e-08!63;UBERON:0000955!8.00e-08!50;UBERON:0006238!8.00e-08!50;UBERON:0002616!1.04e-07!49;UBERON:0007023!4.89e-07!51;UBERON:0000956!5.37e-07!21;UBERON:0001869!5.37e-07!21;UBERON:0000203!5.37e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.62e-12,73;UBERON:0001049,1.02e-11,52;UBERON:0005068,1.02e-11,52;UBERON:0006241,1.02e-11,52;UBERON:0007135,1.02e-11,52;UBERON:0001016,1.34e-11,75;UBERON:0003528,1.56e-11,29;UBERON:0002791,1.56e-11,29;UBERON:0001893,1.56e-11,29;UBERON:0002020,2.07e-11,34;UBERON:0002346,4.12e-11,64;UBERON:0003075,4.12e-11,64;UBERON:0007284,4.12e-11,64;UBERON:0002616,4.69e-11,46;UBERON:0000073,4.96e-11,54;UBERON:0000955,1.33e-10,47;UBERON:0006238,1.33e-10,47;UBERON:0004121,4.69e-10,95;UBERON:0000924,4.69e-10,95;UBERON:0006601,4.69e-10,95;UBERON:0000956,5.65e-09,21;UBERON:0001869,5.65e-09,21;UBERON:0000203,5.65e-09,21;UBERON:0007023,5.71e-09,51;UBERON:0010371,9.21e-09,73;UBERON:0011216,5.69e-08,194;UBERON:0003080,1.11e-07,40;UBERON:0000344,2.22e-07,15;UBERON:0002780,2.49e-07,39;UBERON:0001890,2.49e-07,39;UBERON:0006240,2.49e-07,39;UBERON:0003056,5.38e-07,49|phase1_expression=0.480446541314382,2.79180326111489,2.72999543633722,2.72217790176147,3.00537437967808,1.17515490338323,1.40167584357315,0,0,0,0.513653904676515,0,0,0.262261207256992,0,0,0,0,0.137114433605739,0.42438965179803,0.595303031057488,0,0.261199789138935,2.87986361028132,3.21172993494038,3.44539178469012,0.86152399231815,1.50829862880122,1.90023419456374,2.77233142735924,0.443461021310609,0,0,0,0.866554859253824,1.32987716286794,0.612508068787107,0.418531630736908,0,0,0,0.683045484958446,0,1.1330713617802,0.608261587317087,0.550640256485045,3.12956537739216,1.30815093828268,0.659058548203415,0.777719596297134,0.55994568650145,2.87505128729943,0.167782606057736,0,0,0.514518872071894,0.573066879877513,0.515672092277442,1.01158230429799,2.64495489636016,1.90149421051854,0.338844532069132,0,0,1.97773272513395,0,2.39680088414724,2.30530983192933,3.11068836925433,3.24014251996058,4.6271491497304,1.14260393761521,1.32521124570968,2.08234358665422,1.91690942036473,1.83843757322004,0,0.893811366596314,2.30409799884365,1.45074916503213,1.9212405156506,1.56274011167028,1.95428099300967,1.12552522006336,1.22238598221448,0.294628585473668,0.996601765593721,1.4911955666024,0.605809546665472,0.68014404096107,0.869593466105033,0.860423876981386,2.03991400112325,3.77792234146472,0.649776417447669,3.58421509677868,1.40444420131752,0.681721290312231,0.259786004602869,0.35333957451034,0.281686839553361,0,0,0,0.865964164044856,0.506719730950197,0.505524445014783,1.02765491747154,0.517875767294343,0,0.173485326766136,0.608930956624282,0.461230994512117,0.60289056221049,0.705532242814229,0.753999547978053,1.97755974187499,0.86759614151947,1.76922110389975,0.485300549842228,0.441683036920787,0.969750506270444,1.86391761218122,3.80615036115011,2.51336048176146,1.78819938646014,0,0,0.127070227073065,1.3481157546434,1.37250180845588,0.376963056338593,1.21677024134594,1.27857728665165,1.24672826735736,0.973447578406546,0.611036183101898,0.248813941220186,0.252722758433675,2.31486041475121,0.780722657776222,0.689706313300419,0.720248519221397,0.753524089178575,0.680364991513279,0.384341160854549,1.12442069471675,2.84573707812917,0.862271971731369,0.945530400839096,0.879755620819744,0.876782929710299,0.834141747676794,0.348252166522167,1.02891068203972,0.59710280045548,0,0,0,0.207125772535502,0.703578179943289,0.540186184383045,0.473489471170421,0.590292695242212,0.308534225774757,0.465067889500816,0.536546802799238,0.467061369468678,0.329119699826961,0.656669856316381,1.13496333364198,0.730999937126662,0.658650345873152,0.939444931322602,1.89260953707715,4.11618449517138,5.94753809370836,1.58670339998127,0.213288250535234,0.464473343720877,0.644337306610467,1.00841762311671,0,0.570676878337677,2.37264530772256,0.823494773620054,1.50801125280162,0.397912944082302,0.974820435595601,1.79763881730844,1.51296634912286,1.7922714592893,0.379335801906163,0.114248512609729,1.1270773567308,0.203651327845314,0.775809948670503,0.49095073923223,0.822074982615345,1.32849133181642,1.41298855057237,0.863780147452604,2.37162101669719,0.333690211432188,0,0,0.202860121388503,0.964708639009667,0.25462585178142,0.287696137450811,0.810676133875177,0.549122826376163,0,0.372140947668503,1.5601883655728,0.757736633841335,1.61457672169721,0,0.923765950833023,0.37898282354097,0.814824882210129,0.678980343100753,0.469380496577004,0.502518772325447,1.42826184531608,0.585400943573396,1.10344600874334,0.44292937929755,0.318909537314974,0.327726629431476,0.345369963731791,0.144649058581512,1.50791283939272,0.54390568381871,0.491764273019036,1.10374698521893,1.28440471990234,2.57865710502847,0.655739781506702,1.00988370881749,0.94652465824877,1.17131623288992,1.29254038639679,0.716906393857656,0.668396022247182,0.849229592366497,0.809621403349789,0.292255857911312,1.18586333383957,0.963963949265421,0.567760340833074,0.712262414669021,0.651547837414304,0.329940245945071,0,0.485561272309963,0.302323556964751,0.943025398779491,0.590603785761546,0.922305443831782,0,1.45413491791002,1.78248689192361,0,0,0,0.340439605753788,0.36012218806262,0.258717367565509,0.857348140126369,0.354680467284547,0,0.329098041204242,0,0.469343416127421,2.75381692122966,1.10264199027481,0.49465875882444,0,0.784068024066026,0.716234064018819,0.820704498725306,2.33184669303881,1.48340241608408,0,0.412773735926445,0,0.188368457004691,0.136694227721025,0,0,0.279902904647316,0,3.81868247206045,0.632671987162271,0.203319467126849,0.648032044930808,0.627264888043406,0.87345025498471,0.674321731924103,0.743881101528023,2.09404753587224,0.518459893167171,0.621339313086926,0.56369293868419,0.598066184175915,0,0,1.29159823477731,0.337912250981556,0.821500670520278,0.5208175393758,1.36317147753424,0.966336483304024,1.15212002503146,0.316011120628178,0.608175645870493,0.410843828659309,0.129920822977795,0.179026695667481,0,0,0.147689527174577,0.100966449948148,0.15241361331,0.100826185136841,0,0.0962118416403295,0,1.81384306892169,0.665957860122194,0.62799699626633,0.671538465456314,0.965947970160952,1.12609485270709,1.46521299413812,2.14368379079066,1.50471631210609,1.6942555278512,0,1.14579102687879,0.68741272937475,2.74033007908257,1.5107877947794,1.35004500046361,2.2516060161211,1.35942722695261,2.07104124700728,0.103787347584177,0.399024873401031,0.341467211508268,1.21553358534147,0.419226325255965,0.367687016900028,0.888986911206461,1.03017528619447,0.64183841918363,0.505394423527595,0.25347929989024,0.754505365544305,0.842773567228942,0.704276676453562,0.631790158511746,0,0.695305955669133,0.578727661391115,0,0.735994600671987,0.342869252385415,0.70990322463735,0.476872379894642,1.16277133305863,1.2234219453993,0.846146078916765,0,1.05227884575137,0.814824683075171,1.68342681497322,0.237270036248348,0.689531376628944,0.818462086339379,0.154936841185966,0.192906610981141,0.999242311751784,1.63752125911786,0.644613162144895,0.191288332068843,0.441182838239031,0.231867835620421|short_description=p3@Zdhhc9}} | ||
|EntrezGene=208884 | |||
|HGNC= | |||
|UniProt=B1AVD4,P59268 | |||
|association_with_transcript=0bp_to_NM_172465,uc009tbx.2_5end | |||
|description=CAGE_peak_3_at_Zdhhc9_5end | |||
|id=chrX:45561874..45561885,- | |||
|ontology_enrichment_celltype=CL:0002321!1.82e-08!70;CL:0000220!1.82e-08!70;CL:0002319!5.05e-08!43;CL:0000221!1.44e-07!44;CL:0000133!1.44e-07!44;CL:0000055!3.23e-07!50;CL:0000117!5.09e-07!23;CL:0000337!5.09e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.42e-09,23;CL:0000337,4.42e-09,23;CL:0002321,1.10e-07,70;CL:0002319,2.13e-07,43;CL:0000221,4.71e-07,44;CL:0000133,4.71e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.98e-11!73;UBERON:0005743!6.98e-11!73;UBERON:0000073!1.14e-10!75;UBERON:0001016!1.14e-10!75;UBERON:0004121!1.28e-09!102;UBERON:0000924!1.28e-09!102;UBERON:0006601!1.28e-09!102;UBERON:0002020!6.61e-09!34;UBERON:0002791!1.24e-08!29;UBERON:0003528!1.24e-08!29;UBERON:0001893!1.24e-08!29;UBERON:0001049!1.32e-08!52;UBERON:0005068!1.32e-08!52;UBERON:0006241!1.32e-08!52;UBERON:0007135!1.32e-08!52;UBERON:0002346!3.48e-08!71;UBERON:0003075!3.48e-08!71;UBERON:0007284!3.48e-08!71;UBERON:0000033!5.15e-08!63;UBERON:0000955!8.00e-08!50;UBERON:0006238!8.00e-08!50;UBERON:0002616!1.04e-07!49;UBERON:0007023!4.89e-07!51;UBERON:0000956!5.37e-07!21;UBERON:0001869!5.37e-07!21;UBERON:0000203!5.37e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.62e-12,73;UBERON:0001049,1.02e-11,52;UBERON:0005068,1.02e-11,52;UBERON:0006241,1.02e-11,52;UBERON:0007135,1.02e-11,52;UBERON:0001016,1.34e-11,75;UBERON:0003528,1.56e-11,29;UBERON:0002791,1.56e-11,29;UBERON:0001893,1.56e-11,29;UBERON:0002020,2.07e-11,34;UBERON:0002346,4.12e-11,64;UBERON:0003075,4.12e-11,64;UBERON:0007284,4.12e-11,64;UBERON:0002616,4.69e-11,46;UBERON:0000073,4.96e-11,54;UBERON:0000955,1.33e-10,47;UBERON:0006238,1.33e-10,47;UBERON:0004121,4.69e-10,95;UBERON:0000924,4.69e-10,95;UBERON:0006601,4.69e-10,95;UBERON:0000956,5.65e-09,21;UBERON:0001869,5.65e-09,21;UBERON:0000203,5.65e-09,21;UBERON:0007023,5.71e-09,51;UBERON:0010371,9.21e-09,73;UBERON:0011216,5.69e-08,194;UBERON:0003080,1.11e-07,40;UBERON:0000344,2.22e-07,15;UBERON:0002780,2.49e-07,39;UBERON:0001890,2.49e-07,39;UBERON:0006240,2.49e-07,39;UBERON:0003056,5.38e-07,49 | |||
|phase1_expression=0.480446541314382,2.79180326111489,2.72999543633722,2.72217790176147,3.00537437967808,1.17515490338323,1.40167584357315,0,0,0,0.513653904676515,0,0,0.262261207256992,0,0,0,0,0.137114433605739,0.42438965179803,0.595303031057488,0,0.261199789138935,2.87986361028132,3.21172993494038,3.44539178469012,0.86152399231815,1.50829862880122,1.90023419456374,2.77233142735924,0.443461021310609,0,0,0,0.866554859253824,1.32987716286794,0.612508068787107,0.418531630736908,0,0,0,0.683045484958446,0,1.1330713617802,0.608261587317087,0.550640256485045,3.12956537739216,1.30815093828268,0.659058548203415,0.777719596297134,0.55994568650145,2.87505128729943,0.167782606057736,0,0,0.514518872071894,0.573066879877513,0.515672092277442,1.01158230429799,2.64495489636016,1.90149421051854,0.338844532069132,0,0,1.97773272513395,0,2.39680088414724,2.30530983192933,3.11068836925433,3.24014251996058,4.6271491497304,1.14260393761521,1.32521124570968,2.08234358665422,1.91690942036473,1.83843757322004,0,0.893811366596314,2.30409799884365,1.45074916503213,1.9212405156506,1.56274011167028,1.95428099300967,1.12552522006336,1.22238598221448,0.294628585473668,0.996601765593721,1.4911955666024,0.605809546665472,0.68014404096107,0.869593466105033,0.860423876981386,2.03991400112325,3.77792234146472,0.649776417447669,3.58421509677868,1.40444420131752,0.681721290312231,0.259786004602869,0.35333957451034,0.281686839553361,0,0,0,0.865964164044856,0.506719730950197,0.505524445014783,1.02765491747154,0.517875767294343,0,0.173485326766136,0.608930956624282,0.461230994512117,0.60289056221049,0.705532242814229,0.753999547978053,1.97755974187499,0.86759614151947,1.76922110389975,0.485300549842228,0.441683036920787,0.969750506270444,1.86391761218122,3.80615036115011,2.51336048176146,1.78819938646014,0,0,0.127070227073065,1.3481157546434,1.37250180845588,0.376963056338593,1.21677024134594,1.27857728665165,1.24672826735736,0.973447578406546,0.611036183101898,0.248813941220186,0.252722758433675,2.31486041475121,0.780722657776222,0.689706313300419,0.720248519221397,0.753524089178575,0.680364991513279,0.384341160854549,1.12442069471675,2.84573707812917,0.862271971731369,0.945530400839096,0.879755620819744,0.876782929710299,0.834141747676794,0.348252166522167,1.02891068203972,0.59710280045548,0,0,0,0.207125772535502,0.703578179943289,0.540186184383045,0.473489471170421,0.590292695242212,0.308534225774757,0.465067889500816,0.536546802799238,0.467061369468678,0.329119699826961,0.656669856316381,1.13496333364198,0.730999937126662,0.658650345873152,0.939444931322602,1.89260953707715,4.11618449517138,5.94753809370836,1.58670339998127,0.213288250535234,0.464473343720877,0.644337306610467,1.00841762311671,0,0.570676878337677,2.37264530772256,0.823494773620054,1.50801125280162,0.397912944082302,0.974820435595601,1.79763881730844,1.51296634912286,1.7922714592893,0.379335801906163,0.114248512609729,1.1270773567308,0.203651327845314,0.775809948670503,0.49095073923223,0.822074982615345,1.32849133181642,1.41298855057237,0.863780147452604,2.37162101669719,0.333690211432188,0,0,0.202860121388503,0.964708639009667,0.25462585178142,0.287696137450811,0.810676133875177,0.549122826376163,0,0.372140947668503,1.5601883655728,0.757736633841335,1.61457672169721,0,0.923765950833023,0.37898282354097,0.814824882210129,0.678980343100753,0.469380496577004,0.502518772325447,1.42826184531608,0.585400943573396,1.10344600874334,0.44292937929755,0.318909537314974,0.327726629431476,0.345369963731791,0.144649058581512,1.50791283939272,0.54390568381871,0.491764273019036,1.10374698521893,1.28440471990234,2.57865710502847,0.655739781506702,1.00988370881749,0.94652465824877,1.17131623288992,1.29254038639679,0.716906393857656,0.668396022247182,0.849229592366497,0.809621403349789,0.292255857911312,1.18586333383957,0.963963949265421,0.567760340833074,0.712262414669021,0.651547837414304,0.329940245945071,0,0.485561272309963,0.302323556964751,0.943025398779491,0.590603785761546,0.922305443831782,0,1.45413491791002,1.78248689192361,0,0,0,0.340439605753788,0.36012218806262,0.258717367565509,0.857348140126369,0.354680467284547,0,0.329098041204242,0,0.469343416127421,2.75381692122966,1.10264199027481,0.49465875882444,0,0.784068024066026,0.716234064018819,0.820704498725306,2.33184669303881,1.48340241608408,0,0.412773735926445,0,0.188368457004691,0.136694227721025,0,0,0.279902904647316,0,3.81868247206045,0.632671987162271,0.203319467126849,0.648032044930808,0.627264888043406,0.87345025498471,0.674321731924103,0.743881101528023,2.09404753587224,0.518459893167171,0.621339313086926,0.56369293868419,0.598066184175915,0,0,1.29159823477731,0.337912250981556,0.821500670520278,0.5208175393758,1.36317147753424,0.966336483304024,1.15212002503146,0.316011120628178,0.608175645870493,0.410843828659309,0.129920822977795,0.179026695667481,0,0,0.147689527174577,0.100966449948148,0.15241361331,0.100826185136841,0,0.0962118416403295,0,1.81384306892169,0.665957860122194,0.62799699626633,0.671538465456314,0.965947970160952,1.12609485270709,1.46521299413812,2.14368379079066,1.50471631210609,1.6942555278512,0,1.14579102687879,0.68741272937475,2.74033007908257,1.5107877947794,1.35004500046361,2.2516060161211,1.35942722695261,2.07104124700728,0.103787347584177,0.399024873401031,0.341467211508268,1.21553358534147,0.419226325255965,0.367687016900028,0.888986911206461,1.03017528619447,0.64183841918363,0.505394423527595,0.25347929989024,0.754505365544305,0.842773567228942,0.704276676453562,0.631790158511746,0,0.695305955669133,0.578727661391115,0,0.735994600671987,0.342869252385415,0.70990322463735,0.476872379894642,1.16277133305863,1.2234219453993,0.846146078916765,0,1.05227884575137,0.814824683075171,1.68342681497322,0.237270036248348,0.689531376628944,0.818462086339379,0.154936841185966,0.192906610981141,0.999242311751784,1.63752125911786,0.644613162144895,0.191288332068843,0.441182838239031,0.231867835620421 | |||
|short_description=p3@Zdhhc9 | |||
}} |
Revision as of 19:50, 14 September 2013
Short description: | p3@Zdhhc9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Zdhhc9_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_172465, uc009tbx.2_5end |
EntrezGene: | Zdhhc9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.42e-09 | 23 |
neuroblast (sensu Vertebrata) | 4.42e-09 | 23 |
embryonic cell | 1.10e-07 | 70 |
neural cell | 2.13e-07 | 43 |
ectodermal cell | 4.71e-07 | 44 |
neurectodermal cell | 4.71e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.62e-12 | 73 |
neural tube | 1.02e-11 | 52 |
neural rod | 1.02e-11 | 52 |
future spinal cord | 1.02e-11 | 52 |
neural keel | 1.02e-11 | 52 |
nervous system | 1.34e-11 | 75 |
brain grey matter | 1.56e-11 | 29 |
regional part of telencephalon | 1.56e-11 | 29 |
telencephalon | 1.56e-11 | 29 |
gray matter | 2.07e-11 | 34 |
neurectoderm | 4.12e-11 | 64 |
neural plate | 4.12e-11 | 64 |
presumptive neural plate | 4.12e-11 | 64 |
regional part of brain | 4.69e-11 | 46 |
regional part of nervous system | 4.96e-11 | 54 |
brain | 1.33e-10 | 47 |
future brain | 1.33e-10 | 47 |
ectoderm-derived structure | 4.69e-10 | 95 |
ectoderm | 4.69e-10 | 95 |
presumptive ectoderm | 4.69e-10 | 95 |
cerebral cortex | 5.65e-09 | 21 |
cerebral hemisphere | 5.65e-09 | 21 |
pallium | 5.65e-09 | 21 |
adult organism | 5.71e-09 | 51 |
ecto-epithelium | 9.21e-09 | 73 |
organ system subdivision | 5.69e-08 | 194 |
anterior neural tube | 1.11e-07 | 40 |
mucosa | 2.22e-07 | 15 |
regional part of forebrain | 2.49e-07 | 39 |
forebrain | 2.49e-07 | 39 |
future forebrain | 2.49e-07 | 39 |
pre-chordal neural plate | 5.38e-07 | 49 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.