FFCP PHASE1:Mm9::chrX:133200926..133201018,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=594844|HGNC=|MCL_coexpression_id=1|UniProt=Q8R0A5|association_with_transcript=0bp_to_ENSMUST00000113100_5end|description=CAGE_peak_1_at_Tceal3_5end|id=chrX:133200926..133201018,+|ontology_enrichment_celltype=CL:0000221!4.38e-11!44;CL:0000133!4.38e-11!44;CL:0002319!6.32e-11!43;CL:0000540!3.12e-09!33;CL:0000047!3.12e-09!33;CL:0000031!3.12e-09!33;CL:0000404!3.12e-09!33;CL:0000117!6.86e-09!23;CL:0000337!6.86e-09!23;CL:0000055!2.04e-07!50|ontology_enrichment_celltype_v019_2=CL:0000221,3.57e-11,44;CL:0000133,3.57e-11,44;CL:0002319,5.17e-11,43;CL:0000540,2.65e-09,33;CL:0000047,2.65e-09,33;CL:0000031,2.65e-09,33;CL:0000404,2.65e-09,33;CL:0000117,5.86e-09,23;CL:0000337,5.86e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.07e-29!73;UBERON:0005743!1.07e-29!73;UBERON:0000073!1.74e-28!75;UBERON:0001016!1.74e-28!75;UBERON:0004121!6.90e-28!102;UBERON:0000924!6.90e-28!102;UBERON:0006601!6.90e-28!102;UBERON:0002346!4.30e-27!71;UBERON:0003075!4.30e-27!71;UBERON:0007284!4.30e-27!71;UBERON:0001049!3.72e-24!52;UBERON:0005068!3.72e-24!52;UBERON:0006241!3.72e-24!52;UBERON:0007135!3.72e-24!52;UBERON:0000033!6.66e-24!63;UBERON:0000955!2.20e-23!50;UBERON:0006238!2.20e-23!50;UBERON:0002616!9.45e-23!49;UBERON:0003056!1.20e-19!49;UBERON:0003080!3.88e-18!40;UBERON:0002780!1.95e-17!39;UBERON:0001890!1.95e-17!39;UBERON:0006240!1.95e-17!39;UBERON:0002020!6.97e-16!34;UBERON:0002791!2.06e-13!29;UBERON:0003528!2.06e-13!29;UBERON:0001893!2.06e-13!29;UBERON:0000153!5.63e-11!94;UBERON:0007811!4.32e-10!86;UBERON:0000956!1.56e-09!21;UBERON:0001869!1.56e-09!21;UBERON:0000203!1.56e-09!21;UBERON:0002619!3.62e-09!17;UBERON:0000468!2.40e-08!333;UBERON:0002021!1.65e-07!10;UBERON:0000411!1.65e-07!10;UBERON:0001950!1.65e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.82e-30,73;UBERON:0001016,9.72e-29,75;UBERON:0004121,1.30e-26,95;UBERON:0000924,1.30e-26,95;UBERON:0006601,1.30e-26,95;UBERON:0002346,2.13e-26,64;UBERON:0003075,2.13e-26,64;UBERON:0007284,2.13e-26,64;UBERON:0000073,1.02e-25,54;UBERON:0001049,2.28e-24,52;UBERON:0005068,2.28e-24,52;UBERON:0006241,2.28e-24,52;UBERON:0007135,2.28e-24,52;UBERON:0010371,4.49e-24,73;UBERON:0000955,1.16e-21,47;UBERON:0006238,1.16e-21,47;UBERON:0002616,4.92e-21,46;UBERON:0003056,8.08e-20,49;UBERON:0010314,1.35e-18,92;UBERON:0003080,2.71e-18,40;UBERON:0002780,1.38e-17,39;UBERON:0001890,1.38e-17,39;UBERON:0006240,1.38e-17,39;UBERON:0002020,5.11e-16,34;UBERON:0003528,1.60e-13,29;UBERON:0002791,1.60e-13,29;UBERON:0001893,1.60e-13,29;UBERON:0000956,1.32e-09,21;UBERON:0001869,1.32e-09,21;UBERON:0000203,1.32e-09,21;UBERON:0002619,3.07e-09,17;UBERON:0002021,1.45e-07,10;UBERON:0000411,1.45e-07,10;UBERON:0001950,1.45e-07,10|phase1_expression=34.9124486688451,0.348975407639361,0,0,0,0,0,2.45334314538995,3.09735188733667,4.21316147379588,1.19852577757853,1.11681022593471,0.342401459862411,0.699363219351979,0.333109761815663,0.607425802169478,0.699561878128147,0.157731082679119,0.274228867211478,0,48.2195455156566,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88845226963366,0.811015449756117,0.550640256485045,9.38869613217647,94.8409430254942,113.138384108253,109.464033178822,32.056890552208,109.251948917378,0,1.45072428402269,0.672187598284928,1.02903774414379,1.43266719969378,1.03134418455488,50.781431675759,58.7179986991957,47.5373552629634,6.43804610931351,6.22506357277798,0.449949858640699,1.97773272513395,0,35.9520132622086,96.8230129410317,15.7608210708886,16.7407363531296,17.2466468308133,111.403883917483,112.642955885323,22.0483438586917,18.3064849644831,22.9804696652505,128.835580769285,183.997454180756,200.76373896591,56.1835585730626,71.6348249406868,81.2624858068546,211.899896242048,231.29543272302,213.764748639757,84.5584040309426,103.646583621747,71.5773871969154,2.34751199332871,4.1564358058732,2.89864488701678,0.860423876981386,0,0,0,0,11.5164424508037,0,0,0,30.5630220915397,0,0,0,0,0,0,9.93399753555822,1.03575153458869,38.8918404349841,9.71517829890361,29.2286859179656,25.5983201954225,33.7618714837875,33.5127815336759,25.5103180399241,0.247194967734374,11.423349196673,2.65383165584962,50.4712571835917,4.85851340612866,11.1521308221101,7.45567044872489,163.078903935432,122.945216899498,2.81002760729451,0.11981512450592,0,0.127070227073065,224.23658718902,194.895256800735,44.2303319437283,212.934792235539,230.911057969288,230.852517505671,208.966746831272,21.2844270447161,25.0058010926287,86.9366289011841,21.4650693004203,19.3879460014429,26.4387420098494,28.8099407688559,50.787523610636,30.6164246180975,38.1778886448852,36.7310760274137,72.6956471776634,6.89817577385095,20.2343505779567,33.4307135911503,46.2502995422183,45.3217016237725,55.0238423105023,50.6224055563541,8.95654200683219,0,0,0,1.24275463521301,5.62862543954631,8.10279276574567,6.15536312521547,4.52557733019029,5.39934895105824,3.48800917125612,2.14618721119695,1.98501082024188,3.45575684818309,4.10418660197738,1.94565142910054,1.4619998742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| ||
|EntrezGene=594844 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8R0A5 | |||
|association_with_transcript=0bp_to_ENSMUST00000113100_5end | |||
|description=CAGE_peak_1_at_Tceal3_5end | |||
|id=chrX:133200926..133201018,+ | |||
|ontology_enrichment_celltype=CL:0000221!4.38e-11!44;CL:0000133!4.38e-11!44;CL:0002319!6.32e-11!43;CL:0000540!3.12e-09!33;CL:0000047!3.12e-09!33;CL:0000031!3.12e-09!33;CL:0000404!3.12e-09!33;CL:0000117!6.86e-09!23;CL:0000337!6.86e-09!23;CL:0000055!2.04e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.57e-11,44;CL:0000133,3.57e-11,44;CL:0002319,5.17e-11,43;CL:0000540,2.65e-09,33;CL:0000047,2.65e-09,33;CL:0000031,2.65e-09,33;CL:0000404,2.65e-09,33;CL:0000117,5.86e-09,23;CL:0000337,5.86e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.07e-29!73;UBERON:0005743!1.07e-29!73;UBERON:0000073!1.74e-28!75;UBERON:0001016!1.74e-28!75;UBERON:0004121!6.90e-28!102;UBERON:0000924!6.90e-28!102;UBERON:0006601!6.90e-28!102;UBERON:0002346!4.30e-27!71;UBERON:0003075!4.30e-27!71;UBERON:0007284!4.30e-27!71;UBERON:0001049!3.72e-24!52;UBERON:0005068!3.72e-24!52;UBERON:0006241!3.72e-24!52;UBERON:0007135!3.72e-24!52;UBERON:0000033!6.66e-24!63;UBERON:0000955!2.20e-23!50;UBERON:0006238!2.20e-23!50;UBERON:0002616!9.45e-23!49;UBERON:0003056!1.20e-19!49;UBERON:0003080!3.88e-18!40;UBERON:0002780!1.95e-17!39;UBERON:0001890!1.95e-17!39;UBERON:0006240!1.95e-17!39;UBERON:0002020!6.97e-16!34;UBERON:0002791!2.06e-13!29;UBERON:0003528!2.06e-13!29;UBERON:0001893!2.06e-13!29;UBERON:0000153!5.63e-11!94;UBERON:0007811!4.32e-10!86;UBERON:0000956!1.56e-09!21;UBERON:0001869!1.56e-09!21;UBERON:0000203!1.56e-09!21;UBERON:0002619!3.62e-09!17;UBERON:0000468!2.40e-08!333;UBERON:0002021!1.65e-07!10;UBERON:0000411!1.65e-07!10;UBERON:0001950!1.65e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.82e-30,73;UBERON:0001016,9.72e-29,75;UBERON:0004121,1.30e-26,95;UBERON:0000924,1.30e-26,95;UBERON:0006601,1.30e-26,95;UBERON:0002346,2.13e-26,64;UBERON:0003075,2.13e-26,64;UBERON:0007284,2.13e-26,64;UBERON:0000073,1.02e-25,54;UBERON:0001049,2.28e-24,52;UBERON:0005068,2.28e-24,52;UBERON:0006241,2.28e-24,52;UBERON:0007135,2.28e-24,52;UBERON:0010371,4.49e-24,73;UBERON:0000955,1.16e-21,47;UBERON:0006238,1.16e-21,47;UBERON:0002616,4.92e-21,46;UBERON:0003056,8.08e-20,49;UBERON:0010314,1.35e-18,92;UBERON:0003080,2.71e-18,40;UBERON:0002780,1.38e-17,39;UBERON:0001890,1.38e-17,39;UBERON:0006240,1.38e-17,39;UBERON:0002020,5.11e-16,34;UBERON:0003528,1.60e-13,29;UBERON:0002791,1.60e-13,29;UBERON:0001893,1.60e-13,29;UBERON:0000956,1.32e-09,21;UBERON:0001869,1.32e-09,21;UBERON:0000203,1.32e-09,21;UBERON:0002619,3.07e-09,17;UBERON:0002021,1.45e-07,10;UBERON:0000411,1.45e-07,10;UBERON:0001950,1.45e-07,10 | |||
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| |||
|short_description=p1@Tceal3 | |||
}} |
Revision as of 19:19, 14 September 2013
Short description: | p1@Tceal3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tceal3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000113100_5end |
EntrezGene: | Tceal3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.57e-11 | 44 |
neurectodermal cell | 3.57e-11 | 44 |
neural cell | 5.17e-11 | 43 |
neuron | 2.65e-09 | 33 |
neuronal stem cell | 2.65e-09 | 33 |
neuroblast | 2.65e-09 | 33 |
electrically signaling cell | 2.65e-09 | 33 |
CNS neuron (sensu Vertebrata) | 5.86e-09 | 23 |
neuroblast (sensu Vertebrata) | 5.86e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.82e-30 | 73 |
nervous system | 9.72e-29 | 75 |
ectoderm-derived structure | 1.30e-26 | 95 |
ectoderm | 1.30e-26 | 95 |
presumptive ectoderm | 1.30e-26 | 95 |
neurectoderm | 2.13e-26 | 64 |
neural plate | 2.13e-26 | 64 |
presumptive neural plate | 2.13e-26 | 64 |
regional part of nervous system | 1.02e-25 | 54 |
neural tube | 2.28e-24 | 52 |
neural rod | 2.28e-24 | 52 |
future spinal cord | 2.28e-24 | 52 |
neural keel | 2.28e-24 | 52 |
ecto-epithelium | 4.49e-24 | 73 |
brain | 1.16e-21 | 47 |
future brain | 1.16e-21 | 47 |
regional part of brain | 4.92e-21 | 46 |
pre-chordal neural plate | 8.08e-20 | 49 |
structure with developmental contribution from neural crest | 1.35e-18 | 92 |
anterior neural tube | 2.71e-18 | 40 |
regional part of forebrain | 1.38e-17 | 39 |
forebrain | 1.38e-17 | 39 |
future forebrain | 1.38e-17 | 39 |
gray matter | 5.11e-16 | 34 |
brain grey matter | 1.60e-13 | 29 |
regional part of telencephalon | 1.60e-13 | 29 |
telencephalon | 1.60e-13 | 29 |
cerebral cortex | 1.32e-09 | 21 |
cerebral hemisphere | 1.32e-09 | 21 |
pallium | 1.32e-09 | 21 |
regional part of cerebral cortex | 3.07e-09 | 17 |
occipital lobe | 1.45e-07 | 10 |
visual cortex | 1.45e-07 | 10 |
neocortex | 1.45e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.