FFCP PHASE1:Mm9::chr9:44412747..44412783,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13209|HGNC=|UniProt=P54823|association_with_transcript=-191bp_to_ENSMUST00000098836,ENSMUST00000170489,NM_001110826,NM_007841,NM_181324,uc009pdy.2,uc009pdz.2,uc012grw.1,uc012grx.1_5end|description=CAGE_peak_1_at_Ddx6_5end|id=chr9:44412747..44412783,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!1.65e-16!94;UBERON:0007811!4.58e-15!86;UBERON:0000033!1.01e-14!63;UBERON:0003056!1.46e-14!49;UBERON:0003080!6.86e-13!40;UBERON:0002780!1.31e-12!39;UBERON:0001890!1.31e-12!39;UBERON:0006240!1.31e-12!39;UBERON:0000955!2.43e-12!50;UBERON:0006238!2.43e-12!50;UBERON:0002616!6.95e-12!49;UBERON:0001049!7.36e-12!52;UBERON:0005068!7.36e-12!52;UBERON:0006241!7.36e-12!52;UBERON:0007135!7.36e-12!52;UBERON:0004121!3.95e-11!102;UBERON:0000924!3.95e-11!102;UBERON:0006601!3.95e-11!102;UBERON:0002346!1.01e-10!71;UBERON:0003075!1.01e-10!71;UBERON:0007284!1.01e-10!71;UBERON:0001017!1.12e-10!73;UBERON:0005743!1.12e-10!73;UBERON:0000073!2.56e-10!75;UBERON:0001016!2.56e-10!75;UBERON:0002791!3.47e-10!29;UBERON:0003528!3.47e-10!29;UBERON:0001893!3.47e-10!29;UBERON:0002020!1.08e-09!34;UBERON:0000956!6.00e-09!21;UBERON:0001869!6.00e-09!21;UBERON:0000203!6.00e-09!21;UBERON:0000475!5.82e-08!200;UBERON:0002619!8.44e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.46e-14,49;UBERON:0010371,8.67e-14,73;UBERON:0003080,6.86e-13,40;UBERON:0002346,8.12e-13,64;UBERON:0003075,8.12e-13,64;UBERON:0007284,8.12e-13,64;UBERON:0004121,9.97e-13,95;UBERON:0000924,9.97e-13,95;UBERON:0006601,9.97e-13,95;UBERON:0002780,1.31e-12,39;UBERON:0001890,1.31e-12,39;UBERON:0006240,1.31e-12,39;UBERON:0000955,3.43e-12,47;UBERON:0006238,3.43e-12,47;UBERON:0001049,7.36e-12,52;UBERON:0005068,7.36e-12,52;UBERON:0006241,7.36e-12,52;UBERON:0007135,7.36e-12,52;UBERON:0002616,9.87e-12,46;UBERON:0000073,1.12e-11,54;UBERON:0001017,1.12e-10,73;UBERON:0001016,2.56e-10,75;UBERON:0003528,3.47e-10,29;UBERON:0002791,3.47e-10,29;UBERON:0001893,3.47e-10,29;UBERON:0002020,1.08e-09,34;UBERON:0000956,6.00e-09,21;UBERON:0001869,6.00e-09,21;UBERON:0000203,6.00e-09,21;UBERON:0010314,2.15e-07,92;UBERON:0002619,8.44e-07,17|phase1_expression=33.7914067391115,10.8182376368202,5.91499011206397,9.67885476181856,10.5188103288733,10.5763941304491,10.9797941079897,21.3053483678601,22.6669842664183,19.4273556847255,24.3129514880217,15.0769380501186,22.5984963509192,16.2601948499335,18.6541466616771,14.3757439846776,23.0855419782288,54.2594924416169,58.5478631496505,44.1365237869951,18.0291775120268,20.6525178497841,24.0303806007821,12.6394014006791,11.6998733344257,4.01962374880514,7.75371593086335,7.97243560937789,10.4512880701006,14.1136872665561,8.20402889424627,4.44521471421742,4.30545351309199,0,6.06588401477677,8.14549762256613,10.0042984568561,15.4856703372656,14.0640362014284,16.2292360631877,18.2351761289614,25.2726829434625,20.3914348273085,17.877348152532,15.7134243390248,22.5762505158868,4.69434806608824,7.19483016055474,7.24964403023757,10.4992145500113,10.4989816219022,8.62515386189829,109.226476543586,25.3876749703971,40.3312558970957,10.2903774414379,10.8882707176728,15.9858348606007,45.7235201542691,43.9062512795787,39.2975470173831,8.80995783379743,6.22506357277798,2.2497492932035,0,0.7104801149461,4.79360176829448,7.30014780110954,42.6164306587843,45.0919834027847,47.1127913427096,17.1390590642282,17.2277461942259,49.4862828828414,54.6319184803947,45.041720543891,22.0231761998777,25.154405602782,25.6522910537927,53.6777191061889,54.8925861614458,57.3004707612436,15.0758819460746,16.3201156909187,22.0029476798607,22.0971439105251,28.9014512022179,40.4486797440902,18.2500125932974,20.6310359091524,28.1168554040627,4.30211938490693,10.879541339324,7.55584468292944,5.84798775702902,9.85659151614138,12.4995533917259,13.2935651610885,10.6512261887176,11.3068663843309,29.1545878937729,8.98285341900225,10.1922095882658,7.11066703153331,8.87613268145978,8.36087556067825,9.0994400102661,11.5325718516251,44.2783781036664,23.3054158331775,13.5318554877586,13.3964810457342,16.8349312996923,16.1273225391306,24.693628498498,16.8393232381765,19.7755974187499,21.5453041810668,9.73071607144862,22.9708926925321,19.654895142975,18.4252596191384,24.2309289583559,38.0615036115011,36.8626203991681,14.3055950916811,37.7417642193649,17.3971791988088,21.9831492836402,28.9095934051308,44.8350590762254,46.9947276902113,51.9734717374907,48.5859368927628,29.9214784165767,36.0175604010422,27.1911101480345,30.8529287113031,52.819056512638,20.6233018768745,24.2024023910629,21.6107978167465,25.5688224323596,26.3733431212501,38.1004395247436,41.3807316520065,34.201129464301,32.855328083855,26.9459991166053,30.2569728268511,28.1521798662318,20.8235945806196,23.6340161841758,21.2433821578522,26.1343313238088,21.6947350832158,16.1509033082044,18.5290493122595,21.0280989552739,15.3273071676271,15.7132460187334,14.7650890398032,19.8865577891577,18.495837784256,15.5809784016252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| ||
|EntrezGene=13209 | |||
|HGNC= | |||
|UniProt=P54823 | |||
|association_with_transcript=-191bp_to_ENSMUST00000098836,ENSMUST00000170489,NM_001110826,NM_007841,NM_181324,uc009pdy.2,uc009pdz.2,uc012grw.1,uc012grx.1_5end | |||
|description=CAGE_peak_1_at_Ddx6_5end | |||
|id=chr9:44412747..44412783,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.65e-16!94;UBERON:0007811!4.58e-15!86;UBERON:0000033!1.01e-14!63;UBERON:0003056!1.46e-14!49;UBERON:0003080!6.86e-13!40;UBERON:0002780!1.31e-12!39;UBERON:0001890!1.31e-12!39;UBERON:0006240!1.31e-12!39;UBERON:0000955!2.43e-12!50;UBERON:0006238!2.43e-12!50;UBERON:0002616!6.95e-12!49;UBERON:0001049!7.36e-12!52;UBERON:0005068!7.36e-12!52;UBERON:0006241!7.36e-12!52;UBERON:0007135!7.36e-12!52;UBERON:0004121!3.95e-11!102;UBERON:0000924!3.95e-11!102;UBERON:0006601!3.95e-11!102;UBERON:0002346!1.01e-10!71;UBERON:0003075!1.01e-10!71;UBERON:0007284!1.01e-10!71;UBERON:0001017!1.12e-10!73;UBERON:0005743!1.12e-10!73;UBERON:0000073!2.56e-10!75;UBERON:0001016!2.56e-10!75;UBERON:0002791!3.47e-10!29;UBERON:0003528!3.47e-10!29;UBERON:0001893!3.47e-10!29;UBERON:0002020!1.08e-09!34;UBERON:0000956!6.00e-09!21;UBERON:0001869!6.00e-09!21;UBERON:0000203!6.00e-09!21;UBERON:0000475!5.82e-08!200;UBERON:0002619!8.44e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.46e-14,49;UBERON:0010371,8.67e-14,73;UBERON:0003080,6.86e-13,40;UBERON:0002346,8.12e-13,64;UBERON:0003075,8.12e-13,64;UBERON:0007284,8.12e-13,64;UBERON:0004121,9.97e-13,95;UBERON:0000924,9.97e-13,95;UBERON:0006601,9.97e-13,95;UBERON:0002780,1.31e-12,39;UBERON:0001890,1.31e-12,39;UBERON:0006240,1.31e-12,39;UBERON:0000955,3.43e-12,47;UBERON:0006238,3.43e-12,47;UBERON:0001049,7.36e-12,52;UBERON:0005068,7.36e-12,52;UBERON:0006241,7.36e-12,52;UBERON:0007135,7.36e-12,52;UBERON:0002616,9.87e-12,46;UBERON:0000073,1.12e-11,54;UBERON:0001017,1.12e-10,73;UBERON:0001016,2.56e-10,75;UBERON:0003528,3.47e-10,29;UBERON:0002791,3.47e-10,29;UBERON:0001893,3.47e-10,29;UBERON:0002020,1.08e-09,34;UBERON:0000956,6.00e-09,21;UBERON:0001869,6.00e-09,21;UBERON:0000203,6.00e-09,21;UBERON:0010314,2.15e-07,92;UBERON:0002619,8.44e-07,17 | |||
|phase1_expression=33.7914067391115,10.8182376368202,5.91499011206397,9.67885476181856,10.5188103288733,10.5763941304491,10.9797941079897,21.3053483678601,22.6669842664183,19.4273556847255,24.3129514880217,15.0769380501186,22.5984963509192,16.2601948499335,18.6541466616771,14.3757439846776,23.0855419782288,54.2594924416169,58.5478631496505,44.1365237869951,18.0291775120268,20.6525178497841,24.0303806007821,12.6394014006791,11.6998733344257,4.01962374880514,7.75371593086335,7.97243560937789,10.4512880701006,14.1136872665561,8.20402889424627,4.44521471421742,4.30545351309199,0,6.06588401477677,8.14549762256613,10.0042984568561,15.4856703372656,14.0640362014284,16.2292360631877,18.2351761289614,25.2726829434625,20.3914348273085,17.877348152532,15.7134243390248,22.5762505158868,4.69434806608824,7.19483016055474,7.24964403023757,10.4992145500113,10.4989816219022,8.62515386189829,109.226476543586,25.3876749703971,40.3312558970957,10.2903774414379,10.8882707176728,15.9858348606007,45.7235201542691,43.9062512795787,39.2975470173831,8.80995783379743,6.22506357277798,2.2497492932035,0,0.7104801149461,4.79360176829448,7.30014780110954,42.6164306587843,45.0919834027847,47.1127913427096,17.1390590642282,17.2277461942259,49.4862828828414,54.6319184803947,45.041720543891,22.0231761998777,25.154405602782,25.6522910537927,53.6777191061889,54.8925861614458,57.3004707612436,15.0758819460746,16.3201156909187,22.0029476798607,22.0971439105251,28.9014512022179,40.4486797440902,18.2500125932974,20.6310359091524,28.1168554040627,4.30211938490693,10.879541339324,7.55584468292944,5.84798775702902,9.85659151614138,12.4995533917259,13.2935651610885,10.6512261887176,11.3068663843309,29.1545878937729,8.98285341900225,10.1922095882658,7.11066703153331,8.87613268145978,8.36087556067825,9.0994400102661,11.5325718516251,44.2783781036664,23.3054158331775,13.5318554877586,13.3964810457342,16.8349312996923,16.1273225391306,24.693628498498,16.8393232381765,19.7755974187499,21.5453041810668,9.73071607144862,22.9708926925321,19.654895142975,18.4252596191384,24.2309289583559,38.0615036115011,36.8626203991681,14.3055950916811,37.7417642193649,17.3971791988088,21.9831492836402,28.9095934051308,44.8350590762254,46.9947276902113,51.9734717374907,48.5859368927628,29.9214784165767,36.0175604010422,27.1911101480345,30.8529287113031,52.819056512638,20.6233018768745,24.2024023910629,21.6107978167465,25.5688224323596,26.3733431212501,38.1004395247436,41.3807316520065,34.201129464301,32.855328083855,26.9459991166053,30.2569728268511,28.1521798662318,20.8235945806196,23.6340161841758,21.2433821578522,26.1343313238088,21.6947350832158,16.1509033082044,18.5290493122595,21.0280989552739,15.3273071676271,15.7132460187334,14.7650890398032,19.8865577891577,18.495837784256,15.5809784016252,14.8821724640261,20.6570519077707,23.4698338158011,19.9117418395311,23.9684497555479,23.6720923873899,19.8831982898452,16.0271584162467,17.312628020088,47.1049484783645,46.9245032449537,19.1642894130603,13.4869788998408,24.7414370620871,25.5460339046482,18.1703120464152,11.8993279527772,10.4517680607089,13.6962450801043,10.9141684155238,16.1404975629531,16.5881237808178,16.3144307073744,19.3014446247929,11.6846523125049,15.7780776408527,18.3209971394018,23.8981555200883,26.5056549254571,28.1769339182701,24.8454619971283,27.7352056649705,36.540762162856,29.5946993741524,27.455487524206,24.1778040875717,22.9518724894549,10.0793893209631,12.0128476115588,11.9900987019054,7.42044970870017,11.1573066763677,11.3353265083636,12.2220408855082,13.2340223227373,18.159145398804,10.9824565275233,12.9391385874619,23.0727387554472,14.9778083094989,14.3969960429854,9.32866550313943,10.1313139486307,32.1470550889892,26.9077804714088,29.3336957595647,24.7827825231775,20.8874320976767,25.7959636460396,20.2337094753112,26.147908812945,27.1132447862649,27.9045508957456,22.4831223807057,22.6131374307718,25.7300622980184,21.5527097286452,4.52373851817817,7.61467957346193,8.85175691434265,15.7283945393698,25.6880943980467,21.5669503329654,18.5246488275643,18.4303776859192,12.6203287766503,14.055794794679,29.5130054893935,20.5513166239195,23.6166594527338,27.1753469557279,18.2164815753702,23.0882127749936,28.4607200121497,39.5225219198823,28.529957126862,18.8749539887291,30.2969744397652,27.714980659386,10.619611067197,20.6363540731734,22.9765903293211,20.1807435338811,16.5369060013233,16.908933136916,21.9664049192988,23.6296924160379,21.746340081468,24.3348303610578,16.8669773719998,10.3135543248187,34.3844001811326,27.3692862927592,23.1552043971131,28.935499729265,31.743901821967,28.0039043635251,29.947921749586,23.1393361327095,12.4376005273766,15.2519091021951,18.5243854366168,23.4138479176902,32.6158141925729,28.4073876411614,30.3205753767967,34.4695889464629,19.2377352175701,31.7077266437972,17.7705716029767,17.3364969089107,13.1488114432495,21.4740040985348,24.7416552175056,27.9109371311958,53.8831623080521,47.863396694691,62.7427881072084,10.5013767981662,22.6180235410512,19.3153493770506,18.2529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| |||
|short_description=p1@Ddx6 | |||
}} |
Revision as of 17:57, 14 September 2013
Short description: | p1@Ddx6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ddx6_5end |
Coexpression cluster: | NA |
Association with transcript: | -191bp_to_ENSMUST00000098836, ENSMUST00000170489, NM_001110826, NM_007841, NM_181324, uc009pdy.2, uc009pdz.2, uc012grw.1, uc012grx.1_5end |
EntrezGene: | Ddx6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 1.46e-14 | 49 |
ecto-epithelium | 8.67e-14 | 73 |
anterior neural tube | 6.86e-13 | 40 |
neurectoderm | 8.12e-13 | 64 |
neural plate | 8.12e-13 | 64 |
presumptive neural plate | 8.12e-13 | 64 |
ectoderm-derived structure | 9.97e-13 | 95 |
ectoderm | 9.97e-13 | 95 |
presumptive ectoderm | 9.97e-13 | 95 |
regional part of forebrain | 1.31e-12 | 39 |
forebrain | 1.31e-12 | 39 |
future forebrain | 1.31e-12 | 39 |
brain | 3.43e-12 | 47 |
future brain | 3.43e-12 | 47 |
neural tube | 7.36e-12 | 52 |
neural rod | 7.36e-12 | 52 |
future spinal cord | 7.36e-12 | 52 |
neural keel | 7.36e-12 | 52 |
regional part of brain | 9.87e-12 | 46 |
regional part of nervous system | 1.12e-11 | 54 |
central nervous system | 1.12e-10 | 73 |
nervous system | 2.56e-10 | 75 |
brain grey matter | 3.47e-10 | 29 |
regional part of telencephalon | 3.47e-10 | 29 |
telencephalon | 3.47e-10 | 29 |
gray matter | 1.08e-09 | 34 |
cerebral cortex | 6.00e-09 | 21 |
cerebral hemisphere | 6.00e-09 | 21 |
pallium | 6.00e-09 | 21 |
structure with developmental contribution from neural crest | 2.15e-07 | 92 |
regional part of cerebral cortex | 8.44e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.