FFCP PHASE1:Mm9::chr9:40184011..40184029,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=235283|HGNC=|MCL_coexpression_id=1|UniProt=Q80TI0|association_with_transcript=-5bp_to_uc009ozp.1_5end|description=CAGE_peak_16_at_Gramd1b_5end|id=chr9:40184011..40184029,-|ontology_enrichment_celltype=CL:0000117!8.91e-09!23;CL:0000337!8.91e-09!23;CL:0002319!6.64e-08!43;CL:0000221!1.52e-07!44;CL:0000133!1.52e-07!44|ontology_enrichment_celltype_v019_2=CL:0002610,2.72e-07,3;CL:0002614,7.42e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!8.63e-27!63;UBERON:0001017!1.43e-25!73;UBERON:0005743!1.43e-25!73;UBERON:0000073!2.10e-25!75;UBERON:0001016!2.10e-25!75;UBERON:0001049!9.60e-25!52;UBERON:0005068!9.60e-25!52;UBERON:0006241!9.60e-25!52;UBERON:0007135!9.60e-25!52;UBERON:0000955!2.94e-24!50;UBERON:0006238!2.94e-24!50;UBERON:0002616!3.12e-23!49;UBERON:0004121!9.22e-23!102;UBERON:0000924!9.22e-23!102;UBERON:0006601!9.22e-23!102;UBERON:0002346!1.81e-22!71;UBERON:0003075!1.81e-22!71;UBERON:0007284!1.81e-22!71;UBERON:0003056!4.09e-21!49;UBERON:0002020!1.87e-18!34;UBERON:0003080!6.00e-17!40;UBERON:0007811!3.18e-16!86;UBERON:0002780!3.99e-16!39;UBERON:0001890!3.99e-16!39;UBERON:0006240!3.99e-16!39;UBERON:0002791!3.23e-15!29;UBERON:0003528!3.23e-15!29;UBERON:0001893!3.23e-15!29;UBERON:0000153!2.34e-13!94;UBERON:0002619!5.34e-13!17;UBERON:0000956!2.00e-12!21;UBERON:0001869!2.00e-12!21;UBERON:0000203!2.00e-12!21;UBERON:0002021!1.03e-10!10;UBERON:0000411!1.03e-10!10;UBERON:0001950!1.03e-10!10;UBERON:0003076!1.61e-08!12;UBERON:0003057!1.61e-08!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.51e-34,54;UBERON:0002346,2.90e-31,64;UBERON:0003075,2.90e-31,64;UBERON:0007284,2.90e-31,64;UBERON:0001049,1.95e-30,52;UBERON:0005068,1.95e-30,52;UBERON:0006241,1.95e-30,52;UBERON:0007135,1.95e-30,52;UBERON:0000955,3.89e-30,47;UBERON:0006238,3.89e-30,47;UBERON:0001017,1.04e-28,73;UBERON:0002616,2.76e-28,46;UBERON:0001016,1.00e-27,75;UBERON:0004121,1.91e-26,95;UBERON:0000924,1.91e-26,95;UBERON:0006601,1.91e-26,95;UBERON:0010371,2.02e-26,73;UBERON:0003056,1.60e-25,49;UBERON:0003080,4.98e-23,40;UBERON:0002780,1.68e-21,39;UBERON:0001890,1.68e-21,39;UBERON:0006240,1.68e-21,39;UBERON:0002021,5.60e-21,10;UBERON:0000411,5.60e-21,10;UBERON:0001950,5.60e-21,10;UBERON:0002020,1.37e-20,34;UBERON:0003528,2.80e-20,29;UBERON:0002791,2.80e-20,29;UBERON:0001893,2.80e-20,29;UBERON:0010314,2.63e-19,92;UBERON:0002619,4.35e-19,17;UBERON:0000956,1.42e-17,21;UBERON:0001869,1.42e-17,21;UBERON:0000203,1.42e-17,21;UBERON:0000025,9.62e-12,114;UBERON:0004111,2.05e-11,122;UBERON:0002950,1.20e-08,4;UBERON:0001891,1.20e-08,4;UBERON:0009616,1.20e-08,4;UBERON:0010286,1.20e-08,4;UBERON:0007023,2.01e-08,51;UBERON:0000483,7.94e-08,174;UBERON:0003076,9.46e-08,12;UBERON:0003057,9.46e-08,12;UBERON:0000119,1.21e-07,176;UBERON:0004684,2.72e-07,3;UBERON:0002275,2.72e-07,3;UBERON:0002038,7.42e-07,3;UBERON:0009663,7.42e-07,3;UBERON:0009661,7.42e-07,3;UBERON:0000125,7.42e-07,3;UBERON:0002308,7.42e-07,3|phase1_expression=0.160148847104794,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,1.31811709640683,2.3331587888914,0.279972843250725,1.43752564364972,0,0,0,0,0,0,0.202316460859598,0,0.633831403506179,0,0,0,0,0,0.299600110518405,0.768436610643109,0.311068836925433,0,0,1.42825492201902,1.54607978666129,0.244981598429908,0.287536413054709,0,6.60695285996332,6.51205424234457,5.37622866396852,0.527545150920775,0.640413505216868,0,6.97957497503452,3.37657566019008,2.75036845998258,0.294628585473668,0.711858403995515,0.559198337475902,0,0.226714680320357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0.161766849947409,0,0,0,12.8823550685081,13.1951425292477,0,0,0,0,5.09288173976397,5.49000723382352,0,8.34356736922927,6.64860189058859,5.81806524766768,3.73154905055843,0.203678727700633,0.373220911830279,1.76905930903572,6.94458124425364,0.130120442962704,0.229902104433473,0,0.150704817835715,0.680364991513279,1.0249097622788,1.21812241927647,6.98499100995342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.88811855979556,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.0701358198903186,0.126473074248515,0,0.156998727841375,0.246794327843601,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275936746304732,4.97706828962155,4.45404409050372,0,0.252470927204373,0,0,0,0,0,0,0,0,0,9.63963949265421,0.425820255624806,0.178065603667255,0.651547837414304,1.15479086080775,0,0,0,0,0,0,0,0,0,0,0,0,2.04263763452273,0,0.129358683782755,0,0,0,0.658196082408484,1.522324745573,0.23467170806371,0,2.42581237860458,0,0,0,0,0,0,4.45020724825223,0,0,0,0,0.136694227721025,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0.576060012515731,0,0,0.205421914329655,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0.187682475451182,0.549454872801795,0,0.501572104035363,3.95326289831947,8.28585425712918,4.58316410751517,5.67115501734169,5.48066015816514,6.7985450765073,4.72515750162264,8.55610286126019,9.9691329976525,7.24864436452548,0,0.399024873401031,0,0,0,0,0,0,0,0.252697211763798,0,0,0.0936415074698824,0.256100609619477,0,0.476293691283074,0.231768651889711,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0,0.238436189947321,0,0.0941093804153306,0.169229215783353,0,0,0.135804113845862,0,0.118635018124174,0.29551344712669,0.409231043169689,0.154936841185966,0.385813221962283,0,0,0,0.191288332068843,0,0|short_description=p16@Gramd1b}} | ||
|EntrezGene=235283 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q80TI0 | |||
|association_with_transcript=-5bp_to_uc009ozp.1_5end | |||
|description=CAGE_peak_16_at_Gramd1b_5end | |||
|id=chr9:40184011..40184029,- | |||
|ontology_enrichment_celltype=CL:0000117!8.91e-09!23;CL:0000337!8.91e-09!23;CL:0002319!6.64e-08!43;CL:0000221!1.52e-07!44;CL:0000133!1.52e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,2.72e-07,3;CL:0002614,7.42e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!8.63e-27!63;UBERON:0001017!1.43e-25!73;UBERON:0005743!1.43e-25!73;UBERON:0000073!2.10e-25!75;UBERON:0001016!2.10e-25!75;UBERON:0001049!9.60e-25!52;UBERON:0005068!9.60e-25!52;UBERON:0006241!9.60e-25!52;UBERON:0007135!9.60e-25!52;UBERON:0000955!2.94e-24!50;UBERON:0006238!2.94e-24!50;UBERON:0002616!3.12e-23!49;UBERON:0004121!9.22e-23!102;UBERON:0000924!9.22e-23!102;UBERON:0006601!9.22e-23!102;UBERON:0002346!1.81e-22!71;UBERON:0003075!1.81e-22!71;UBERON:0007284!1.81e-22!71;UBERON:0003056!4.09e-21!49;UBERON:0002020!1.87e-18!34;UBERON:0003080!6.00e-17!40;UBERON:0007811!3.18e-16!86;UBERON:0002780!3.99e-16!39;UBERON:0001890!3.99e-16!39;UBERON:0006240!3.99e-16!39;UBERON:0002791!3.23e-15!29;UBERON:0003528!3.23e-15!29;UBERON:0001893!3.23e-15!29;UBERON:0000153!2.34e-13!94;UBERON:0002619!5.34e-13!17;UBERON:0000956!2.00e-12!21;UBERON:0001869!2.00e-12!21;UBERON:0000203!2.00e-12!21;UBERON:0002021!1.03e-10!10;UBERON:0000411!1.03e-10!10;UBERON:0001950!1.03e-10!10;UBERON:0003076!1.61e-08!12;UBERON:0003057!1.61e-08!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.51e-34,54;UBERON:0002346,2.90e-31,64;UBERON:0003075,2.90e-31,64;UBERON:0007284,2.90e-31,64;UBERON:0001049,1.95e-30,52;UBERON:0005068,1.95e-30,52;UBERON:0006241,1.95e-30,52;UBERON:0007135,1.95e-30,52;UBERON:0000955,3.89e-30,47;UBERON:0006238,3.89e-30,47;UBERON:0001017,1.04e-28,73;UBERON:0002616,2.76e-28,46;UBERON:0001016,1.00e-27,75;UBERON:0004121,1.91e-26,95;UBERON:0000924,1.91e-26,95;UBERON:0006601,1.91e-26,95;UBERON:0010371,2.02e-26,73;UBERON:0003056,1.60e-25,49;UBERON:0003080,4.98e-23,40;UBERON:0002780,1.68e-21,39;UBERON:0001890,1.68e-21,39;UBERON:0006240,1.68e-21,39;UBERON:0002021,5.60e-21,10;UBERON:0000411,5.60e-21,10;UBERON:0001950,5.60e-21,10;UBERON:0002020,1.37e-20,34;UBERON:0003528,2.80e-20,29;UBERON:0002791,2.80e-20,29;UBERON:0001893,2.80e-20,29;UBERON:0010314,2.63e-19,92;UBERON:0002619,4.35e-19,17;UBERON:0000956,1.42e-17,21;UBERON:0001869,1.42e-17,21;UBERON:0000203,1.42e-17,21;UBERON:0000025,9.62e-12,114;UBERON:0004111,2.05e-11,122;UBERON:0002950,1.20e-08,4;UBERON:0001891,1.20e-08,4;UBERON:0009616,1.20e-08,4;UBERON:0010286,1.20e-08,4;UBERON:0007023,2.01e-08,51;UBERON:0000483,7.94e-08,174;UBERON:0003076,9.46e-08,12;UBERON:0003057,9.46e-08,12;UBERON:0000119,1.21e-07,176;UBERON:0004684,2.72e-07,3;UBERON:0002275,2.72e-07,3;UBERON:0002038,7.42e-07,3;UBERON:0009663,7.42e-07,3;UBERON:0009661,7.42e-07,3;UBERON:0000125,7.42e-07,3;UBERON:0002308,7.42e-07,3 | |||
|phase1_expression=0.160148847104794,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,1.31811709640683,2.3331587888914,0.279972843250725,1.43752564364972,0,0,0,0,0,0,0.202316460859598,0,0.633831403506179,0,0,0,0,0,0.299600110518405,0.768436610643109,0.311068836925433,0,0,1.42825492201902,1.54607978666129,0.244981598429908,0.287536413054709,0,6.60695285996332,6.51205424234457,5.37622866396852,0.527545150920775,0.640413505216868,0,6.97957497503452,3.37657566019008,2.75036845998258,0.294628585473668,0.711858403995515,0.559198337475902,0,0.226714680320357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0.161766849947409,0,0,0,12.8823550685081,13.1951425292477,0,0,0,0,5.09288173976397,5.49000723382352,0,8.34356736922927,6.64860189058859,5.81806524766768,3.73154905055843,0.203678727700633,0.373220911830279,1.76905930903572,6.94458124425364,0.130120442962704,0.229902104433473,0,0.150704817835715,0.680364991513279,1.0249097622788,1.21812241927647,6.98499100995342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.88811855979556,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.0701358198903186,0.126473074248515,0,0.156998727841375,0.246794327843601,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275936746304732,4.97706828962155,4.45404409050372,0,0.252470927204373,0,0,0,0,0,0,0,0,0,9.63963949265421,0.425820255624806,0.178065603667255,0.651547837414304,1.15479086080775,0,0,0,0,0,0,0,0,0,0,0,0,2.04263763452273,0,0.129358683782755,0,0,0,0.658196082408484,1.522324745573,0.23467170806371,0,2.42581237860458,0,0,0,0,0,0,4.45020724825223,0,0,0,0,0.136694227721025,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0.576060012515731,0,0,0.205421914329655,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0.187682475451182,0.549454872801795,0,0.501572104035363,3.95326289831947,8.28585425712918,4.58316410751517,5.67115501734169,5.48066015816514,6.7985450765073,4.72515750162264,8.55610286126019,9.9691329976525,7.24864436452548,0,0.399024873401031,0,0,0,0,0,0,0,0.252697211763798,0,0,0.0936415074698824,0.256100609619477,0,0.476293691283074,0.231768651889711,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0,0.238436189947321,0,0.0941093804153306,0.169229215783353,0,0,0.135804113845862,0,0.118635018124174,0.29551344712669,0.409231043169689,0.154936841185966,0.385813221962283,0,0,0,0.191288332068843,0,0 | |||
|short_description=p16@Gramd1b | |||
}} |
Revision as of 17:46, 14 September 2013
Short description: | p16@Gramd1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_16_at_Gramd1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -5bp_to_uc009ozp.1_5end |
EntrezGene: | Gramd1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 2.72e-07 | 3 |
neuron of the substantia nigra | 7.42e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.