FFCP PHASE1:Mm9::chr9:120019615..120019626,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=208638|HGNC=|MCL_coexpression_id=505|UniProt=|association_with_transcript=89bp_to_ENSMUST00000137522,ENSMUST00000139079_5end|description=CAGE_peak_5_at_Slc25a38_5end|id=chr9:120019615..120019626,+|ontology_enrichment_celltype=CL:0000838!4.53e-07!12;CL:0000084!8.50e-07!11;CL:0000827!8.50e-07!11|ontology_enrichment_celltype_v019_2=CL:0000791,6.37e-12,9;CL:0000789,6.37e-12,9;CL:0002420,6.37e-12,9;CL:0002419,6.37e-12,9;CL:0000790,6.37e-12,9;CL:0000084,8.55e-10,11;CL:0000827,8.55e-10,11;CL:0000838,5.39e-09,12;CL:0002031,5.95e-09,25;CL:0000542,2.57e-08,13;CL:0000051,2.57e-08,13;CL:0000624,4.37e-08,8;CL:0000625,1.78e-07,1;CL:0000213,2.37e-07,1;CL:0002078,2.37e-07,1;CL:0000115,2.37e-07,1;CL:0002262,2.37e-07,1;CL:1000398,2.37e-07,1;CL:0000988,6.52e-07,32;CL:0002032,6.52e-07,32;CL:0000037,6.52e-07,32;CL:0000837,6.52e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005057!5.89e-08!51|ontology_enrichment_uberon_v019_2=UBERON:0002394,2.37e-07,1;UBERON:0001281,2.37e-07,1;UBERON:0000353,2.37e-07,1;UBERON:0003497,2.37e-07,1;UBERON:0003909,2.37e-07,1;UBERON:0003928,2.37e-07,1;UBERON:0003835,2.37e-07,1;UBERON:0003513,2.37e-07,1;UBERON:0001280,2.37e-07,1;UBERON:0004647,2.37e-07,1;UBERON:0002294,2.37e-07,1;UBERON:0001173,2.37e-07,1;UBERON:0004912,2.37e-07,1;UBERON:0005171,2.37e-07,1|phase1_expression=0.480446541314382,0.348975407639361,0.454999239389536,0,0,0.33575854382378,0.233612640595526,0.645616617207881,4.08287294239834,5.38348410540585,0.171217968225505,0.239316476986009,0.856003649656029,0.611942816932982,0,0.607425802169478,1.39912375625629,0,0.137114433605739,0,0.340173160604279,0.496454756004426,0.261199789138935,0,0,0.57423196411502,0,0.430942465371778,0,0,0.221730510655305,1.27006134691926,0.61506478758457,0,0.288851619751275,0,0.204169356262369,0.418531630736908,0,0,0,0.683045484958446,0,0,0,0,0.782391344348039,0.436050312760893,0.219686182734472,0,0,0,0.335565212115473,4.35217285206807,1.34437519656986,0.257259436035947,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0.571301968807607,0.220868540951614,0.122490799214954,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0,0,0.186399445825301,0.075726193333184,0,1.15945795480671,0,0.679971333707751,0,0,0.896053774194671,0.280888840263504,0,0,0,0.563373679106722,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0,0,0,0,0,0.352766121407114,0.125666591329675,0,0.144599356919912,0,0.161766849947409,0,0,0,0,0,0,0.718890747035522,0,0.381210681219194,0.299581278809645,0,0,0,0,0.41557608911912,0.324482526135515,0.101839363850316,0.870848794270651,0,0,0,0.229902104433473,0.360124259610698,0.150704817835715,0,0,0.0937017245597288,0.258703370739016,0,0,0.351902248327898,0.219195732427575,0,0,0.411564272815887,0.199034266818493,0,0.257347907114715,0.284163499395593,0.621377317606506,0.469052119962192,0,0.23674473558521,0.196764231747404,0.154267112887378,0,0,0,0,0.164167464079095,0,0.292399974850665,0.219550115291051,0,0.420579897128254,0,0.330418782983798,0,0,0,0.128867461322093,0,0.22237804384487,0,0,0.329397909448022,0,0,0.19496408711912,0,0,0.199141273254367,0.189667900953082,0.114248512609729,0,0,0,0.0701358198903186,0.126473074248515,0.147610147979602,0.31399745568275,0.246794327843601,0,0.500535317148282,0.982794975566015,0.449724224769707,1.62288097110802,0.964708639009667,0.50925170356284,0.287696137450811,0.648540907100142,0.823684239564244,0,0,0.312037673114561,0.252578877947112,0.179397413521912,0.482443521363367,0,0,0.488894929326078,0,0,0,0.238043640886014,0.585400943573396,0,0,0.159454768657487,0.491589944147214,0,0,0,0,0.491764273019036,0.275936746304732,0,0.117211686592203,0,0,0,0.780877488593277,0,0,0,0,0,0,0.395287777946524,0,0.141940085208269,0.534196811001766,0.162886959353576,0,0,0,0.604647113929502,0.565815239267694,0,0.307435147943927,0.258428293168221,0,0.356497378384721,0.316036757935816,0,2.06271086496374,0,0.18006109403131,0.129358683782755,0,0,0.178368817602071,0,0.304464949114599,0,0.21183207086382,0,0,0.161464426695906,0.0603129249281559,0,0,0,0,0.512612642393558,0.206386867963223,0.370389054739423,1.13021074202815,1.0935538217682,0.686334519619568,1.5298058699447,1.95932033253121,2.21119958087078,0,0.474503990371703,0,0.216010681643603,0,0,0,0,0,0,0,0.56369293868419,0.149516546043979,0,0,0.129159823477731,0.168956125490778,0,0.13020438484395,0.209718688851422,0.483168241652012,0,0.632022241256357,0.202725215290164,0.205421914329655,0.25984164595559,0,0.198681354781265,0.240390899039938,0.295379054349154,0.100966449948148,0.228620419965,0.100826185136841,0.194915761479505,0,0,0,0.221985953374065,0.179427713218951,0,0,0,0,0,0,0,0,0,0.171853182343688,0,0.755393897389701,0,0.45032120322422,0,0.51776031175182,0.207574695168353,0.399024873401031,0,0.243106717068294,0.419226325255965,0,0.222246727801615,0.206035057238894,0.320919209591815,0,0,0.188626341386076,0,0.256100609619477,0.0574354689556133,0,0.231768651889711,0.38581844092741,0,0.294397840268795,0,0,0.238436189947321,0,0.0941093804153306,0.169229215783353,0,0.526139422875686,0,0,0.118635018124174,0,0,0,0.192906610981141,0,0.233931608445408,0,0,0.220591419119515,0.231867835620421|short_description=p5@Slc25a38}} | ||
|EntrezGene=208638 | |||
|HGNC= | |||
|MCL_coexpression_id=505 | |||
|UniProt= | |||
|association_with_transcript=89bp_to_ENSMUST00000137522,ENSMUST00000139079_5end | |||
|description=CAGE_peak_5_at_Slc25a38_5end | |||
|id=chr9:120019615..120019626,+ | |||
|ontology_enrichment_celltype=CL:0000838!4.53e-07!12;CL:0000084!8.50e-07!11;CL:0000827!8.50e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.37e-12,9;CL:0000789,6.37e-12,9;CL:0002420,6.37e-12,9;CL:0002419,6.37e-12,9;CL:0000790,6.37e-12,9;CL:0000084,8.55e-10,11;CL:0000827,8.55e-10,11;CL:0000838,5.39e-09,12;CL:0002031,5.95e-09,25;CL:0000542,2.57e-08,13;CL:0000051,2.57e-08,13;CL:0000624,4.37e-08,8;CL:0000625,1.78e-07,1;CL:0000213,2.37e-07,1;CL:0002078,2.37e-07,1;CL:0000115,2.37e-07,1;CL:0002262,2.37e-07,1;CL:1000398,2.37e-07,1;CL:0000988,6.52e-07,32;CL:0002032,6.52e-07,32;CL:0000037,6.52e-07,32;CL:0000837,6.52e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005057!5.89e-08!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002394,2.37e-07,1;UBERON:0001281,2.37e-07,1;UBERON:0000353,2.37e-07,1;UBERON:0003497,2.37e-07,1;UBERON:0003909,2.37e-07,1;UBERON:0003928,2.37e-07,1;UBERON:0003835,2.37e-07,1;UBERON:0003513,2.37e-07,1;UBERON:0001280,2.37e-07,1;UBERON:0004647,2.37e-07,1;UBERON:0002294,2.37e-07,1;UBERON:0001173,2.37e-07,1;UBERON:0004912,2.37e-07,1;UBERON:0005171,2.37e-07,1 | |||
|phase1_expression=0.480446541314382,0.348975407639361,0.454999239389536,0,0,0.33575854382378,0.233612640595526,0.645616617207881,4.08287294239834,5.38348410540585,0.171217968225505,0.239316476986009,0.856003649656029,0.611942816932982,0,0.607425802169478,1.39912375625629,0,0.137114433605739,0,0.340173160604279,0.496454756004426,0.261199789138935,0,0,0.57423196411502,0,0.430942465371778,0,0,0.221730510655305,1.27006134691926,0.61506478758457,0,0.288851619751275,0,0.204169356262369,0.418531630736908,0,0,0,0.683045484958446,0,0,0,0,0.782391344348039,0.436050312760893,0.219686182734472,0,0,0,0.335565212115473,4.35217285206807,1.34437519656986,0.257259436035947,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0.571301968807607,0.220868540951614,0.122490799214954,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0,0,0.186399445825301,0.075726193333184,0,1.15945795480671,0,0.679971333707751,0,0,0.896053774194671,0.280888840263504,0,0,0,0.563373679106722,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0,0,0,0,0,0.352766121407114,0.125666591329675,0,0.144599356919912,0,0.161766849947409,0,0,0,0,0,0,0.718890747035522,0,0.381210681219194,0.299581278809645,0,0,0,0,0.41557608911912,0.324482526135515,0.101839363850316,0.870848794270651,0,0,0,0.229902104433473,0.360124259610698,0.150704817835715,0,0,0.0937017245597288,0.258703370739016,0,0,0.351902248327898,0.219195732427575,0,0,0.411564272815887,0.199034266818493,0,0.257347907114715,0.284163499395593,0.621377317606506,0.469052119962192,0,0.23674473558521,0.196764231747404,0.154267112887378,0,0,0,0,0.164167464079095,0,0.292399974850665,0.219550115291051,0,0.420579897128254,0,0.330418782983798,0,0,0,0.128867461322093,0,0.22237804384487,0,0,0.329397909448022,0,0,0.19496408711912,0,0,0.199141273254367,0.189667900953082,0.114248512609729,0,0,0,0.0701358198903186,0.126473074248515,0.147610147979602,0.31399745568275,0.246794327843601,0,0.500535317148282,0.982794975566015,0.449724224769707,1.62288097110802,0.964708639009667,0.50925170356284,0.287696137450811,0.648540907100142,0.823684239564244,0,0,0.312037673114561,0.252578877947112,0.179397413521912,0.482443521363367,0,0,0.488894929326078,0,0,0,0.238043640886014,0.585400943573396,0,0,0.159454768657487,0.491589944147214,0,0,0,0,0.491764273019036,0.275936746304732,0,0.117211686592203,0,0,0,0.780877488593277,0,0,0,0,0,0,0.395287777946524,0,0.141940085208269,0.534196811001766,0.162886959353576,0,0,0,0.604647113929502,0.565815239267694,0,0.307435147943927,0.258428293168221,0,0.356497378384721,0.316036757935816,0,2.06271086496374,0,0.18006109403131,0.129358683782755,0,0,0.178368817602071,0,0.304464949114599,0,0.21183207086382,0,0,0.161464426695906,0.0603129249281559,0,0,0,0,0.512612642393558,0.206386867963223,0.370389054739423,1.13021074202815,1.0935538217682,0.686334519619568,1.5298058699447,1.95932033253121,2.21119958087078,0,0.474503990371703,0,0.216010681643603,0,0,0,0,0,0,0,0.56369293868419,0.149516546043979,0,0,0.129159823477731,0.168956125490778,0,0.13020438484395,0.209718688851422,0.483168241652012,0,0.632022241256357,0.202725215290164,0.205421914329655,0.25984164595559,0,0.198681354781265,0.240390899039938,0.295379054349154,0.100966449948148,0.228620419965,0.100826185136841,0.194915761479505,0,0,0,0.221985953374065,0.179427713218951,0,0,0,0,0,0,0,0,0,0.171853182343688,0,0.755393897389701,0,0.45032120322422,0,0.51776031175182,0.207574695168353,0.399024873401031,0,0.243106717068294,0.419226325255965,0,0.222246727801615,0.206035057238894,0.320919209591815,0,0,0.188626341386076,0,0.256100609619477,0.0574354689556133,0,0.231768651889711,0.38581844092741,0,0.294397840268795,0,0,0.238436189947321,0,0.0941093804153306,0.169229215783353,0,0.526139422875686,0,0,0.118635018124174,0,0,0,0.192906610981141,0,0.233931608445408,0,0,0.220591419119515,0.231867835620421 | |||
|short_description=p5@Slc25a38 | |||
}} |
Revision as of 17:09, 14 September 2013
Short description: | p5@Slc25a38 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Slc25a38_5end |
Coexpression cluster: | MCL_coexpression_mm9:505 |
Association with transcript: | 89bp_to_ENSMUST00000137522, ENSMUST00000139079_5end |
EntrezGene: | Slc25a38 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 6.37e-12 | 9 |
alpha-beta T cell | 6.37e-12 | 9 |
immature T cell | 6.37e-12 | 9 |
mature T cell | 6.37e-12 | 9 |
immature alpha-beta T cell | 6.37e-12 | 9 |
T cell | 8.55e-10 | 11 |
pro-T cell | 8.55e-10 | 11 |
lymphoid lineage restricted progenitor cell | 5.39e-09 | 12 |
hematopoietic lineage restricted progenitor cell | 5.95e-09 | 25 |
lymphocyte | 2.57e-08 | 13 |
common lymphoid progenitor | 2.57e-08 | 13 |
CD4-positive, alpha-beta T cell | 4.37e-08 | 8 |
CD8-positive, alpha-beta T cell | 1.78e-07 | 1 |
lining cell | 2.37e-07 | 1 |
meso-epithelial cell | 2.37e-07 | 1 |
endothelial cell | 2.37e-07 | 1 |
endothelial cell of sinusoid | 2.37e-07 | 1 |
endothelial cell of hepatic sinusoid | 2.37e-07 | 1 |
hematopoietic cell | 6.52e-07 | 32 |
hematopoietic oligopotent progenitor cell | 6.52e-07 | 32 |
hematopoietic stem cell | 6.52e-07 | 32 |
hematopoietic multipotent progenitor cell | 6.52e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
bile duct | 2.37e-07 | 1 |
hepatic sinusoid | 2.37e-07 | 1 |
parenchyma | 2.37e-07 | 1 |
abdomen blood vessel | 2.37e-07 | 1 |
sinusoid | 2.37e-07 | 1 |
digestive system duct | 2.37e-07 | 1 |
abdominal segment blood vessel | 2.37e-07 | 1 |
trunk blood vessel | 2.37e-07 | 1 |
liver parenchyma | 2.37e-07 | 1 |
liver lobule | 2.37e-07 | 1 |
biliary system | 2.37e-07 | 1 |
biliary tree | 2.37e-07 | 1 |
biliary bud | 2.37e-07 | 1 |
hepatic duct | 2.37e-07 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.