FFCP PHASE1:Mm9::chr9:108998049..108998061,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=235611|HGNC=|MCL_coexpression_id=1685|UniProt=Q8CJH3,B2RWT9|association_with_transcript=99bp_to_ENSMUST00000072093,NM_172775,uc009rrz.2_5end|description=CAGE_peak_5_at_Plxnb1_5end|id=chr9:108998049..108998061,+|ontology_enrichment_celltype=CL:0000221!1.08e-22!44;CL:0000133!1.08e-22!44;CL:0002319!3.21e-22!43;CL:0000540!6.16e-18!33;CL:0000047!6.16e-18!33;CL:0000031!6.16e-18!33;CL:0000404!6.16e-18!33;CL:0000055!1.27e-16!50;CL:0000117!7.82e-15!23;CL:0000337!7.82e-15!23;CL:0000393!2.93e-13!39;CL:0000211!2.93e-13!39;CL:0002321!6.06e-09!70;CL:0000220!6.06e-09!70|ontology_enrichment_celltype_v019_2=CL:0000221,1.71e-43,44;CL:0000133,1.71e-43,44;CL:0002319,2.13e-42,43;CL:0000540,3.21e-32,33;CL:0000047,3.21e-32,33;CL:0000031,3.21e-32,33;CL:0000404,3.21e-32,33;CL:0000117,1.68e-30,23;CL:0000337,1.68e-30,23;CL:0000393,5.69e-26,39;CL:0000211,5.69e-26,39;CL:0002321,8.30e-25,70;CL:0002609,1.73e-10,6;CL:0002453,2.25e-10,8;CL:0000333,2.28e-10,10;CL:0000095,2.28e-10,10;CL:0000243,2.28e-10,10;CL:0000123,2.28e-10,10;CL:0000125,2.28e-10,10;CL:0000030,2.28e-10,10;CL:0000339,2.28e-10,10;CL:0000723,1.97e-08,91;CL:0000048,1.97e-08,91;CL:0000034,1.95e-07,97;CL:0000128,2.60e-07,6;CL:0000126,2.60e-07,6;CL:0000127,2.60e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.77e-28!102;UBERON:0000924!3.77e-28!102;UBERON:0006601!3.77e-28!102;UBERON:0000073!1.92e-24!75;UBERON:0001016!1.92e-24!75;UBERON:0001017!9.24e-24!73;UBERON:0005743!9.24e-24!73;UBERON:0002346!1.10e-16!71;UBERON:0003075!1.10e-16!71;UBERON:0007284!1.10e-16!71;UBERON:0000033!3.55e-15!63;UBERON:0001049!2.36e-13!52;UBERON:0005068!2.36e-13!52;UBERON:0006241!2.36e-13!52;UBERON:0007135!2.36e-13!52;UBERON:0000955!1.95e-12!50;UBERON:0006238!1.95e-12!50;UBERON:0002616!6.42e-12!49;UBERON:0003056!1.40e-11!49;UBERON:0003080!2.66e-09!40;UBERON:0002780!7.63e-09!39;UBERON:0001890!7.63e-09!39;UBERON:0006240!7.63e-09!39;UBERON:0000153!1.39e-08!94;UBERON:0002020!1.91e-08!34;UBERON:0000468!3.39e-08!333;UBERON:0007811!4.88e-08!86|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.05e-37,75;UBERON:0001017,1.04e-36,73;UBERON:0004121,1.82e-36,95;UBERON:0000924,1.82e-36,95;UBERON:0006601,1.82e-36,95;UBERON:0002346,9.98e-24,64;UBERON:0003075,9.98e-24,64;UBERON:0007284,9.98e-24,64;UBERON:0000073,3.22e-21,54;UBERON:0010371,8.15e-21,73;UBERON:0001049,4.97e-19,52;UBERON:0005068,4.97e-19,52;UBERON:0006241,4.97e-19,52;UBERON:0007135,4.97e-19,52;UBERON:0010314,1.66e-17,92;UBERON:0000955,3.17e-15,47;UBERON:0006238,3.17e-15,47;UBERON:0002020,4.63e-15,34;UBERON:0002616,3.06e-14,46;UBERON:0003056,5.80e-13,49;UBERON:0003080,1.96e-11,40;UBERON:0003528,3.42e-11,29;UBERON:0002791,3.42e-11,29;UBERON:0001893,3.42e-11,29;UBERON:0002780,1.42e-10,39;UBERON:0001890,1.42e-10,39;UBERON:0006240,1.42e-10,39;UBERON:0011216,4.24e-10,194;UBERON:0003076,3.70e-09,12;UBERON:0003057,3.70e-09,12;UBERON:0002420,4.37e-09,8;UBERON:0007245,4.37e-09,8;UBERON:0010009,4.37e-09,8;UBERON:0010011,4.37e-09,8;UBERON:0000454,4.37e-09,8;UBERON:0001954,5.19e-09,7;UBERON:0003022,5.19e-09,7;UBERON:0002421,5.19e-09,7;UBERON:0000349,5.19e-09,7;UBERON:0002600,5.19e-09,7|phase1_expression=0.480446541314382,0,0,0,0,0.16787927191189,0,0,0,0.234064526321993,0,0,0.171200729931206,0.262261207256992,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.251793635951155,0.304130793658544,0,0,9.59310688073965,5.4921545683618,6.22175677037707,2.51975558925653,1.43752564364972,0,0,0,0,0,0,2.42779753031517,1.5869729378161,5.70448263155561,0.338844532069132,0,0,0,0,2.99600110518405,10.7581125490035,3.7328260431052,1.89008313664367,2.73422449756797,2.28520787523043,0.662605622854841,3.42974237801871,4.12135525378416,4.5960939330501,1.10115880999389,2.80912143787413,1.99688493233117,2.37395317914349,3.65950574409639,2.6045668527838,2.23346399201105,1.12552522006336,3.36156145108982,1.76777151284201,3.84403538157578,2.98239113320481,0.454357159999104,2.41828992341714,0.289864488701678,0,0,0,0,0,0,0,0,0,1.12674735821344,0,0,0,0.649473123033642,1.26679932737549,0.505524445014783,0,0.258937883647172,0.29688427812965,0.173485326766136,0,0.230615497256059,0.753613202763113,0.352766121407114,1.0053327306374,0.494389935468748,0,0,0.485300549842228,0,0,0,0.292780797011547,1.04723353406728,0,0,0,0,1.64769703345305,0.915001205637253,1.50785222535437,0.869121600961382,0.767146371990992,1.45451631191692,1.62241263067758,0.509196819251581,0.373220911830279,0,0.210441855886474,0.650602214813519,0.689706313300419,1.62055916824814,1.35634336052144,1.83698547708585,0.768682321709099,3.09215691047105,0.258703370739016,0.862271971731369,0.567318240503458,0.703804496655795,0.219195732427575,0.278047249225598,0.348252166522167,0.411564272815887,0.796137067273973,0,0,0,1.03562886267751,0.469052119962192,0.36012412292203,0,0.590292695242212,0.154267112887378,0.232533944750408,0,0.116765342367169,0.16455984991348,0,0.162137619091711,0.146199987425332,0,0.13420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| ||
|EntrezGene=235611 | |||
|HGNC= | |||
|MCL_coexpression_id=1685 | |||
|UniProt=Q8CJH3,B2RWT9 | |||
|association_with_transcript=99bp_to_ENSMUST00000072093,NM_172775,uc009rrz.2_5end | |||
|description=CAGE_peak_5_at_Plxnb1_5end | |||
|id=chr9:108998049..108998061,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.08e-22!44;CL:0000133!1.08e-22!44;CL:0002319!3.21e-22!43;CL:0000540!6.16e-18!33;CL:0000047!6.16e-18!33;CL:0000031!6.16e-18!33;CL:0000404!6.16e-18!33;CL:0000055!1.27e-16!50;CL:0000117!7.82e-15!23;CL:0000337!7.82e-15!23;CL:0000393!2.93e-13!39;CL:0000211!2.93e-13!39;CL:0002321!6.06e-09!70;CL:0000220!6.06e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.71e-43,44;CL:0000133,1.71e-43,44;CL:0002319,2.13e-42,43;CL:0000540,3.21e-32,33;CL:0000047,3.21e-32,33;CL:0000031,3.21e-32,33;CL:0000404,3.21e-32,33;CL:0000117,1.68e-30,23;CL:0000337,1.68e-30,23;CL:0000393,5.69e-26,39;CL:0000211,5.69e-26,39;CL:0002321,8.30e-25,70;CL:0002609,1.73e-10,6;CL:0002453,2.25e-10,8;CL:0000333,2.28e-10,10;CL:0000095,2.28e-10,10;CL:0000243,2.28e-10,10;CL:0000123,2.28e-10,10;CL:0000125,2.28e-10,10;CL:0000030,2.28e-10,10;CL:0000339,2.28e-10,10;CL:0000723,1.97e-08,91;CL:0000048,1.97e-08,91;CL:0000034,1.95e-07,97;CL:0000128,2.60e-07,6;CL:0000126,2.60e-07,6;CL:0000127,2.60e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.77e-28!102;UBERON:0000924!3.77e-28!102;UBERON:0006601!3.77e-28!102;UBERON:0000073!1.92e-24!75;UBERON:0001016!1.92e-24!75;UBERON:0001017!9.24e-24!73;UBERON:0005743!9.24e-24!73;UBERON:0002346!1.10e-16!71;UBERON:0003075!1.10e-16!71;UBERON:0007284!1.10e-16!71;UBERON:0000033!3.55e-15!63;UBERON:0001049!2.36e-13!52;UBERON:0005068!2.36e-13!52;UBERON:0006241!2.36e-13!52;UBERON:0007135!2.36e-13!52;UBERON:0000955!1.95e-12!50;UBERON:0006238!1.95e-12!50;UBERON:0002616!6.42e-12!49;UBERON:0003056!1.40e-11!49;UBERON:0003080!2.66e-09!40;UBERON:0002780!7.63e-09!39;UBERON:0001890!7.63e-09!39;UBERON:0006240!7.63e-09!39;UBERON:0000153!1.39e-08!94;UBERON:0002020!1.91e-08!34;UBERON:0000468!3.39e-08!333;UBERON:0007811!4.88e-08!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.05e-37,75;UBERON:0001017,1.04e-36,73;UBERON:0004121,1.82e-36,95;UBERON:0000924,1.82e-36,95;UBERON:0006601,1.82e-36,95;UBERON:0002346,9.98e-24,64;UBERON:0003075,9.98e-24,64;UBERON:0007284,9.98e-24,64;UBERON:0000073,3.22e-21,54;UBERON:0010371,8.15e-21,73;UBERON:0001049,4.97e-19,52;UBERON:0005068,4.97e-19,52;UBERON:0006241,4.97e-19,52;UBERON:0007135,4.97e-19,52;UBERON:0010314,1.66e-17,92;UBERON:0000955,3.17e-15,47;UBERON:0006238,3.17e-15,47;UBERON:0002020,4.63e-15,34;UBERON:0002616,3.06e-14,46;UBERON:0003056,5.80e-13,49;UBERON:0003080,1.96e-11,40;UBERON:0003528,3.42e-11,29;UBERON:0002791,3.42e-11,29;UBERON:0001893,3.42e-11,29;UBERON:0002780,1.42e-10,39;UBERON:0001890,1.42e-10,39;UBERON:0006240,1.42e-10,39;UBERON:0011216,4.24e-10,194;UBERON:0003076,3.70e-09,12;UBERON:0003057,3.70e-09,12;UBERON:0002420,4.37e-09,8;UBERON:0007245,4.37e-09,8;UBERON:0010009,4.37e-09,8;UBERON:0010011,4.37e-09,8;UBERON:0000454,4.37e-09,8;UBERON:0001954,5.19e-09,7;UBERON:0003022,5.19e-09,7;UBERON:0002421,5.19e-09,7;UBERON:0000349,5.19e-09,7;UBERON:0002600,5.19e-09,7 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0.16787927191189,0,0,0,0.234064526321993,0,0,0.171200729931206,0.262261207256992,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.251793635951155,0.304130793658544,0,0,9.59310688073965,5.4921545683618,6.22175677037707,2.51975558925653,1.43752564364972,0,0,0,0,0,0,2.42779753031517,1.5869729378161,5.70448263155561,0.338844532069132,0,0,0,0,2.99600110518405,10.7581125490035,3.7328260431052,1.89008313664367,2.73422449756797,2.28520787523043,0.662605622854841,3.42974237801871,4.12135525378416,4.5960939330501,1.10115880999389,2.80912143787413,1.99688493233117,2.37395317914349,3.65950574409639,2.6045668527838,2.23346399201105,1.12552522006336,3.36156145108982,1.76777151284201,3.84403538157578,2.98239113320481,0.454357159999104,2.41828992341714,0.289864488701678,0,0,0,0,0,0,0,0,0,1.12674735821344,0,0,0,0.649473123033642,1.26679932737549,0.505524445014783,0,0.258937883647172,0.29688427812965,0.173485326766136,0,0.230615497256059,0.753613202763113,0.352766121407114,1.0053327306374,0.494389935468748,0,0,0.485300549842228,0,0,0,0.292780797011547,1.04723353406728,0,0,0,0,1.64769703345305,0.915001205637253,1.50785222535437,0.869121600961382,0.767146371990992,1.45451631191692,1.62241263067758,0.509196819251581,0.373220911830279,0,0.210441855886474,0.650602214813519,0.689706313300419,1.62055916824814,1.35634336052144,1.83698547708585,0.768682321709099,3.09215691047105,0.258703370739016,0.862271971731369,0.567318240503458,0.703804496655795,0.219195732427575,0.278047249225598,0.348252166522167,0.411564272815887,0.796137067273973,0,0,0,1.03562886267751,0.469052119962192,0.36012412292203,0,0.590292695242212,0.154267112887378,0.232533944750408,0,0.116765342367169,0.16455984991348,0,0.162137619091711,0.146199987425332,0,0.134206418760372,0,1.64647379806855,0.330418782983798,0,0,0.232236671860439,0.257734922644187,0.605050573870028,0.444756087689741,0,0,0,0,0,0.19496408711912,0,0.432276099749388,0,0.569003702859245,0.571242563048644,2.25415471346161,0.407302655690628,0.775809948670503,0.701358198903186,0.632365371242573,0.442830443938806,0,0.246794327843601,0,0,0.196558995113203,0.224862112384854,0,0.241177159752417,0,0,0,0,0,0,0,0.252578877947112,0,0.482443521363367,0.554259570499814,0.37898282354097,0.651859905768103,0.169745085775188,0.234690248288502,1.34005005953453,0.952174563544055,0.780534591431195,0.315270288212382,0.8858587585951,0.637819074629948,0.327726629431476,0.518054945597687,0.289298117163023,0,0,0.491764273019036,0.275936746304732,1.44495530989013,1.99259867206745,0,0.504941854408746,1.26203287766503,1.17131623288992,3.87762115919038,0.238968797952552,1.11399337041197,1.69845918473299,0.809621403349789,0.876767573733936,1.97643888973262,1.92792789853084,0.567760340833074,0.178065603667255,0.651547837414304,0.824850614862677,0,0.242780636154981,0,0.565815239267694,0.590603785761546,0,0.516856586336442,0,0.712994756769443,0.948110273807448,0,0,1.70219802876894,0.720244376125241,0.646793418913773,0.643011105094777,0.709360934569094,0.356737635204141,0.658196082408484,0.913394847343798,0,1.0591603543191,0,0.8244312647074,0.322928853391811,0.72375509913787,0.358117032009409,0.820704498725306,0,1.48340241608408,0,0.619160603889667,0.185194527369712,0.188368457004691,0.136694227721025,0,0,0,0,0,0.474503990371703,0.406638934253697,0.86404272657441,0.627264888043406,0.436725127492355,0.404593039154462,0.578574190077352,0.26175594198403,0.648074866458964,0,0,0.448549638131936,0.496375471371293,0.583353565032143,0.645799117388655,0,0.58678619322877,0.2604087696879,0.524296722128554,0.483168241652012,0,0,0.202725215290164,0.205421914329655,0.25984164595559,0.179026695667481,0,0.120195449519969,0.147689527174577,0.302899349844443,0.15241361331,0.100826185136841,0,0.192423683280659,0.116876902181569,1.81384306892169,0,0,0,0,0,0.183151624267265,1.07184189539533,0,0,0.460325236507177,0,0.859265911718438,0,0.755393897389701,0,0,0,0.51776031175182,0.518936737920883,1.19707462020309,0.853668028770671,0.486213434136588,0,0,0.44449345560323,0.412070114477788,0.320919209591815,0.252697211763798,0.50695859978048,0.188626341386076,0.187283014939765,0.832326981263301,0.574354689556133,0.476293691283074,0.579421629724277,0.38581844092741,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0,0.564656282491984,0,0.365855945745545,0.263069711437843,0.407412341537585,0.561142271657738,0.711810108745045,0.591026894253381,0,0.77468420592983,0,0.749431733813838,0,0.214871054048298,0.57386499620653,0.661774257358546,0.231867835620421 | |||
|short_description=p5@Plxnb1 | |||
}} |
Revision as of 16:53, 14 September 2013
Short description: | p5@Plxnb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Plxnb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1685 |
Association with transcript: | 99bp_to_ENSMUST00000072093, NM_172775, uc009rrz.2_5end |
EntrezGene: | Plxnb1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.71e-43 | 44 |
neurectodermal cell | 1.71e-43 | 44 |
neural cell | 2.13e-42 | 43 |
neuron | 3.21e-32 | 33 |
neuronal stem cell | 3.21e-32 | 33 |
neuroblast | 3.21e-32 | 33 |
electrically signaling cell | 3.21e-32 | 33 |
CNS neuron (sensu Vertebrata) | 1.68e-30 | 23 |
neuroblast (sensu Vertebrata) | 1.68e-30 | 23 |
electrically responsive cell | 5.69e-26 | 39 |
electrically active cell | 5.69e-26 | 39 |
embryonic cell | 8.30e-25 | 70 |
neuron of cerebral cortex | 1.73e-10 | 6 |
oligodendrocyte precursor cell | 2.25e-10 | 8 |
migratory neural crest cell | 2.28e-10 | 10 |
neuron associated cell | 2.28e-10 | 10 |
glial cell (sensu Vertebrata) | 2.28e-10 | 10 |
neuron associated cell (sensu Vertebrata) | 2.28e-10 | 10 |
glial cell | 2.28e-10 | 10 |
glioblast | 2.28e-10 | 10 |
glioblast (sensu Vertebrata) | 2.28e-10 | 10 |
somatic stem cell | 1.97e-08 | 91 |
multi fate stem cell | 1.97e-08 | 91 |
stem cell | 1.95e-07 | 97 |
oligodendrocyte | 2.60e-07 | 6 |
macroglial cell | 2.60e-07 | 6 |
astrocyte | 2.60e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.