FFCP PHASE1:Mm9::chr8:81345035..81345042,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=78651|HGNC=|UniProt=P62313|association_with_transcript=0bp_to_ENSMUST00000051867,ENSMUST00000130325_5end|description=CAGE_peak_3_at_Lsm6_5end|id=chr8:81345035..81345042,-|ontology_enrichment_celltype=CL:0000117!2.39e-08!23;CL:0000337!2.39e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,5.71e-11,23;CL:0000337,5.71e-11,23;CL:0000540,8.81e-08,33;CL:0000047,8.81e-08,33;CL:0000031,8.81e-08,33;CL:0000404,8.81e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.21e-09!71;UBERON:0003075!2.21e-09!71;UBERON:0007284!2.21e-09!71;UBERON:0000033!7.99e-09!63;UBERON:0001049!2.66e-08!52;UBERON:0005068!2.66e-08!52;UBERON:0006241!2.66e-08!52;UBERON:0007135!2.66e-08!52;UBERON:0004121!1.01e-07!102;UBERON:0000924!1.01e-07!102;UBERON:0006601!1.01e-07!102;UBERON:0000073!1.78e-07!75;UBERON:0001016!1.78e-07!75;UBERON:0001017!2.84e-07!73;UBERON:0005743!2.84e-07!73;UBERON:0003056!2.97e-07!49;UBERON:0000955!3.25e-07!50;UBERON:0006238!3.25e-07!50;UBERON:0002616!7.53e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.10e-08,64;UBERON:0003075,1.10e-08,64;UBERON:0007284,1.10e-08,64;UBERON:0003056,1.64e-08,49;UBERON:0010371,1.75e-08,73;UBERON:0000073,1.94e-08,54;UBERON:0001049,4.84e-08,52;UBERON:0005068,4.84e-08,52;UBERON:0006241,4.84e-08,52;UBERON:0007135,4.84e-08,52;UBERON:0001017,5.55e-08,73;UBERON:0004121,6.93e-08,95;UBERON:0000924,6.93e-08,95;UBERON:0006601,6.93e-08,95;UBERON:0000955,1.46e-07,47;UBERON:0006238,1.46e-07,47;UBERON:0001016,1.64e-07,75;UBERON:0002020,2.96e-07,34;UBERON:0003528,4.66e-07,29;UBERON:0002791,4.66e-07,29;UBERON:0001893,4.66e-07,29;UBERON:0003080,4.87e-07,40;UBERON:0002616,4.92e-07,46;UBERON:0010314,5.08e-07,92;UBERON:0002420,5.27e-07,8;UBERON:0007245,5.27e-07,8;UBERON:0010009,5.27e-07,8;UBERON:0010011,5.27e-07,8;UBERON:0000454,5.27e-07,8|phase1_expression=1.60148847104794,0,0,0,0,0.839396359559449,0,0.129123323441576,0,0.234064526321993,0.68487187290202,0.239316476986009,0,0.262261207256992,0.666219523631325,0.202475267389826,0,0.473193248037357,0.137114433605739,1.27316895539409,0.765389611359628,0.695036658406197,0.261199789138935,0.47997726838022,0,0,0,0,0,0.504060259519861,0.221730510655305,0.635030673459631,0,0,0.577703239502549,0.831173226792462,0.408338712524738,0,0.7813353445238,1.57057123192139,0,0,0.971020706062307,0.125896817975577,0.304130793658544,0.734187008646726,0,0.872100625521786,0.219686182734472,0,0.839918529752175,0,0.503347818173209,0,0.336093799142464,0.514518872071894,0,0.515672092277442,1.82084814773638,0,1.26766280701236,0.338844532069132,0.889294796111139,0.899899717281399,0,0,0,0.384218305321555,1.97010263386108,1.21505344498522,1.89292465216244,1.99955689082663,0.883474163806454,1.22490799214954,1.72521847832825,0.919218786610021,0,2.80912143787413,4.14737639791857,1.05509030184155,2.10421580285542,4.16730696445408,4.4669279840221,3.93933827022176,2.29197371665215,0.883885756421003,1.99320353118744,0.931997229126503,0.832988126665025,0.831287161174641,0.579728977403356,1.72084775396277,1.3599426674155,0,0.649776417447669,0,0.702222100658759,0.340860645156116,0.519572009205738,0.70667914902068,1.83096445709685,0,0,0,0.649473123033642,1.01343946190039,1.01104889002957,0.5709193985953,0.258937883647172,0.890652834388949,1.38788261412909,0.608930956624282,0.691846491768175,1.20578112442098,0.470354828542819,0.628332956648377,0.247194967734374,0.433798070759735,0,0.323533699894818,0.662524555381181,1.93950101254089,0,0.585561594023094,0.628340120440365,0.510914110417183,1.67741174308288,0.599902730993408,1.14363204365758,1.04853447583376,0.915001205637253,1.7591609295801,1.91206752211504,0.255715457330331,1.45451631191692,1.1356888414743,0.81471491080253,0.622034853050465,0.252722758433675,0.841767423545896,0.260240885925407,1.14951052216736,1.0803727788321,1.20563854268572,1.08858398642125,1.2811372028485,1.12442069471675,0.258703370739016,0.646703978798527,0.378212160335639,0.879755620819744,0.657587197282725,0.278047249225598,0,0.411564272815887,1.99034266818493,0.702213187313235,0.51469581422943,1.13665399758237,0.828503090142008,0.703578179943289,1.08037236876609,0,0.393528463494808,0.925602677324269,0.697601834251224,2.14618721119695,0.583826711835847,0.822799249567402,0.656669856316381,0.810688095458557,0.438599962275997,1.3173006917463,0.402619256281115,0.841159794256509,1.13195073617213,0.330418782983798,0.264450566663544,0.853153002140936,0.928946687441754,1.15980715189884,0.80673409849337,0.667134131534611,0,0,0,0,0.795825888164603,0.19496408711912,1.79763881730844,0.216138049874694,0,1.51734320762465,1.02823661348756,0,2.24016460629846,0.581857461502877,0.631222379012867,0.69560190836683,1.03327103585722,0.784993639206874,0.616985819609003,0.296452627087149,0.166845105716094,0.982794975566015,0.224862112384854,0.608580364165509,0.241177159752417,0.763877555344259,0.287696137450811,0.162135226775035,1.09824565275233,0,0.744281895337007,0.624075346229121,0.505157755894224,0.53819224056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| ||
|EntrezGene=78651 | |||
|HGNC= | |||
|UniProt=P62313 | |||
|association_with_transcript=0bp_to_ENSMUST00000051867,ENSMUST00000130325_5end | |||
|description=CAGE_peak_3_at_Lsm6_5end | |||
|id=chr8:81345035..81345042,- | |||
|ontology_enrichment_celltype=CL:0000117!2.39e-08!23;CL:0000337!2.39e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.71e-11,23;CL:0000337,5.71e-11,23;CL:0000540,8.81e-08,33;CL:0000047,8.81e-08,33;CL:0000031,8.81e-08,33;CL:0000404,8.81e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.21e-09!71;UBERON:0003075!2.21e-09!71;UBERON:0007284!2.21e-09!71;UBERON:0000033!7.99e-09!63;UBERON:0001049!2.66e-08!52;UBERON:0005068!2.66e-08!52;UBERON:0006241!2.66e-08!52;UBERON:0007135!2.66e-08!52;UBERON:0004121!1.01e-07!102;UBERON:0000924!1.01e-07!102;UBERON:0006601!1.01e-07!102;UBERON:0000073!1.78e-07!75;UBERON:0001016!1.78e-07!75;UBERON:0001017!2.84e-07!73;UBERON:0005743!2.84e-07!73;UBERON:0003056!2.97e-07!49;UBERON:0000955!3.25e-07!50;UBERON:0006238!3.25e-07!50;UBERON:0002616!7.53e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.10e-08,64;UBERON:0003075,1.10e-08,64;UBERON:0007284,1.10e-08,64;UBERON:0003056,1.64e-08,49;UBERON:0010371,1.75e-08,73;UBERON:0000073,1.94e-08,54;UBERON:0001049,4.84e-08,52;UBERON:0005068,4.84e-08,52;UBERON:0006241,4.84e-08,52;UBERON:0007135,4.84e-08,52;UBERON:0001017,5.55e-08,73;UBERON:0004121,6.93e-08,95;UBERON:0000924,6.93e-08,95;UBERON:0006601,6.93e-08,95;UBERON:0000955,1.46e-07,47;UBERON:0006238,1.46e-07,47;UBERON:0001016,1.64e-07,75;UBERON:0002020,2.96e-07,34;UBERON:0003528,4.66e-07,29;UBERON:0002791,4.66e-07,29;UBERON:0001893,4.66e-07,29;UBERON:0003080,4.87e-07,40;UBERON:0002616,4.92e-07,46;UBERON:0010314,5.08e-07,92;UBERON:0002420,5.27e-07,8;UBERON:0007245,5.27e-07,8;UBERON:0010009,5.27e-07,8;UBERON:0010011,5.27e-07,8;UBERON:0000454,5.27e-07,8 | |||
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| |||
|short_description=p3@Lsm6 | |||
}} | |||
Revision as of 16:07, 14 September 2013
| Short description: | p3@Lsm6 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_Lsm6_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENSMUST00000051867, ENSMUST00000130325_5end |
| EntrezGene: | Lsm6 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 5.71e-11 | 23 |
| neuroblast (sensu Vertebrata) | 5.71e-11 | 23 |
| neuron | 8.81e-08 | 33 |
| neuronal stem cell | 8.81e-08 | 33 |
| neuroblast | 8.81e-08 | 33 |
| electrically signaling cell | 8.81e-08 | 33 |
| Ontology term | p-value | n |
|---|---|---|
| neurectoderm | 1.10e-08 | 64 |
| neural plate | 1.10e-08 | 64 |
| presumptive neural plate | 1.10e-08 | 64 |
| pre-chordal neural plate | 1.64e-08 | 49 |
| ecto-epithelium | 1.75e-08 | 73 |
| regional part of nervous system | 1.94e-08 | 54 |
| neural tube | 4.84e-08 | 52 |
| neural rod | 4.84e-08 | 52 |
| future spinal cord | 4.84e-08 | 52 |
| neural keel | 4.84e-08 | 52 |
| central nervous system | 5.55e-08 | 73 |
| ectoderm-derived structure | 6.93e-08 | 95 |
| ectoderm | 6.93e-08 | 95 |
| presumptive ectoderm | 6.93e-08 | 95 |
| brain | 1.46e-07 | 47 |
| future brain | 1.46e-07 | 47 |
| nervous system | 1.64e-07 | 75 |
| gray matter | 2.96e-07 | 34 |
| brain grey matter | 4.66e-07 | 29 |
| regional part of telencephalon | 4.66e-07 | 29 |
| telencephalon | 4.66e-07 | 29 |
| anterior neural tube | 4.87e-07 | 40 |
| regional part of brain | 4.92e-07 | 46 |
| structure with developmental contribution from neural crest | 5.08e-07 | 92 |
| basal ganglion | 5.27e-07 | 8 |
| nuclear complex of neuraxis | 5.27e-07 | 8 |
| aggregate regional part of brain | 5.27e-07 | 8 |
| collection of basal ganglia | 5.27e-07 | 8 |
| cerebral subcortex | 5.27e-07 | 8 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
