FFCP PHASE1:Mm9::chr8:75095926..75095958,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=74166|HGNC=|MCL_coexpression_id=14|UniProt=Q3TMP8|association_with_transcript=-43bp_to_ENSMUST00000034244,NM_144534,uc009mgi.2_5end|description=CAGE_peak_1_at_Tmem38a_5end|id=chr8:75095926..75095958,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.88e-10!102;UBERON:0000924!1.88e-10!102;UBERON:0006601!1.88e-10!102;UBERON:0000073!2.43e-10!75;UBERON:0001016!2.43e-10!75;UBERON:0001017!4.79e-10!73;UBERON:0005743!4.79e-10!73;UBERON:0000033!1.91e-08!63;UBERON:0000955!5.79e-08!50;UBERON:0006238!5.79e-08!50;UBERON:0001049!7.19e-08!52;UBERON:0005068!7.19e-08!52;UBERON:0006241!7.19e-08!52;UBERON:0007135!7.19e-08!52;UBERON:0002616!8.97e-08!49;UBERON:0002346!2.70e-07!71;UBERON:0003075!2.70e-07!71;UBERON:0007284!2.70e-07!71;UBERON:0007100!5.24e-07!18;UBERON:0000948!5.24e-07!18;UBERON:0005498!5.24e-07!18;UBERON:0004140!5.24e-07!18;UBERON:0009881!5.24e-07!18;UBERON:0004141!5.24e-07!18;UBERON:0003084!5.24e-07!18;UBERON:0007005!5.24e-07!18;UBERON:0004139!5.24e-07!18;UBERON:0004291!5.24e-07!18|ontology_enrichment_uberon_v019_2=UBERON:0010314,3.30e-13,92;UBERON:0004121,1.43e-11,95;UBERON:0000924,1.43e-11,95;UBERON:0006601,1.43e-11,95;UBERON:0001016,2.21e-10,75;UBERON:0001017,4.37e-10,73;UBERON:0010371,9.66e-09,73;UBERON:0000073,1.24e-08,54;UBERON:0002346,1.96e-08,64;UBERON:0003075,1.96e-08,64;UBERON:0007284,1.96e-08,64;UBERON:0001049,6.72e-08,52;UBERON:0005068,6.72e-08,52;UBERON:0006241,6.72e-08,52;UBERON:0007135,6.72e-08,52;UBERON:0000955,4.23e-07,47;UBERON:0006238,4.23e-07,47;UBERON:0007100,4.93e-07,18;UBERON:0000948,4.93e-07,18;UBERON:0005498,4.93e-07,18;UBERON:0004140,4.93e-07,18;UBERON:0009881,4.93e-07,18;UBERON:0004141,4.93e-07,18;UBERON:0003084,4.93e-07,18;UBERON:0007005,4.93e-07,18;UBERON:0004139,4.93e-07,18;UBERON:0004291,4.93e-07,18;UBERON:0002616,6.49e-07,46|phase1_expression=2.40223270657191,0,0.454999239389536,1.20985684522732,3.00537437967808,0.33575854382378,0.467225281191051,0.516493293766305,0.422366166455,1.63845168425395,0.34243593645101,0.478632953972018,0.171200729931206,1.04904482902797,0,0.202475267389826,0,0.315462165358238,0.274228867211478,0,8.24919914465377,2.87943758482567,1.04479915655574,0.47997726838022,0.91763712426868,0.57423196411502,0,1.07735616342945,1.14014051673824,0.252030129759931,1.55211357458713,0.635030673459631,1.23012957516914,0,0,0.166234645358492,0.204169356262369,7.95210098400125,4.6880120671428,2.09409497589519,11.1763982725893,6.83045484958446,4.36959317728038,1.38486499773135,1.31790010585369,2.56965453026354,3.12956537739216,14.3896603211095,11.4236815021925,10.4992145500113,4.33957907038624,11.5002051491977,0.167782606057736,0,1.00828139742739,4.3734104126111,4.01146815914259,6.70373719960675,3.84401275633236,3.1739458756322,7.60597684207415,11.5207140903505,8.00365316500025,1.7997994345628,0.988866362566974,4.2628806896766,12.2836045312546,20.3635701820424,2.07379224616955,1.35005938331691,2.52389953621658,17.7103610330358,11.7060326704355,2.57230678351403,1.15014565221884,4.5960939330501,15.4162233399144,26.558966321719,18.4327839907492,4.74790635828698,2.74462930807229,3.12548022334056,20.9387249251036,15.757353080887,16.5022107598955,5.30331453852602,8.82704420954438,7.64237727883732,7.72407171998477,7.78387069099891,1.15945795480671,0.860423876981386,0.679971333707751,1.07940638327563,0,0,110.108425383293,1.53387290320252,1.81850203222008,2.47337702157238,5.0703631119605,2.56652954828636,2.54805239706646,0,1.29894624606728,1.52015919285059,1.01104889002957,14.0446172054444,1.03575153458869,1.33597925158342,2.25530924795977,4.26251669636998,3.92046345335299,2.11011696773672,6.11461277105665,1.13099932196708,1.73036477414062,1.87979163995885,38.9228642857945,87.6776326714958,167.397870992978,97.4599258801796,1.86391761218122,9.66176630138106,11.3101221679266,1.53274233125155,0,0,0.127070227073065,9.43681028250383,10.980014467647,2.51308704225729,17.9039049798045,21.7358138730781,16.4152555202052,14.9261962022337,3.46253837091075,32.5946262998444,0.505445516867349,17.0457903268044,1.17108398666433,3.90833577536904,4.68161537493908,5.87748789559289,5.10273743634959,5.76511741281824,7.58983968933804,17.074422468775,1.07783996466421,3.02569728268511,3.69497360744293,6.79506770525482,2.50242524303038,13.9300866608867,5.96768195583036,2.38841120182192,0,0,0,7.87077935634907,8.20841209933837,10.0834754418168,13.9679393995274,15.1508458445501,16.6608481918369,21.6256568617879,34.3389953791513,45.7720142079304,51.1781133230924,61.8911339578189,92.3373740727297,99.415991449226,105.164505224413,104.009974539288,25.6553737248235,2.6755199218614,0.330418782983798,1.05780226665418,0.639864751605702,1.85789337488351,1.54640953586512,1.61346819698674,1.11189021922435,1.33157938278791,2.84717436926707,0.823494773620054,0.754005626400808,0.795825888164603,1.36474860983384,0.898819408654221,1.72910439899755,1.1948476395262,2.65535061334314,2.5134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| ||
|EntrezGene=74166 | |||
|HGNC= | |||
|MCL_coexpression_id=14 | |||
|UniProt=Q3TMP8 | |||
|association_with_transcript=-43bp_to_ENSMUST00000034244,NM_144534,uc009mgi.2_5end | |||
|description=CAGE_peak_1_at_Tmem38a_5end | |||
|id=chr8:75095926..75095958,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.88e-10!102;UBERON:0000924!1.88e-10!102;UBERON:0006601!1.88e-10!102;UBERON:0000073!2.43e-10!75;UBERON:0001016!2.43e-10!75;UBERON:0001017!4.79e-10!73;UBERON:0005743!4.79e-10!73;UBERON:0000033!1.91e-08!63;UBERON:0000955!5.79e-08!50;UBERON:0006238!5.79e-08!50;UBERON:0001049!7.19e-08!52;UBERON:0005068!7.19e-08!52;UBERON:0006241!7.19e-08!52;UBERON:0007135!7.19e-08!52;UBERON:0002616!8.97e-08!49;UBERON:0002346!2.70e-07!71;UBERON:0003075!2.70e-07!71;UBERON:0007284!2.70e-07!71;UBERON:0007100!5.24e-07!18;UBERON:0000948!5.24e-07!18;UBERON:0005498!5.24e-07!18;UBERON:0004140!5.24e-07!18;UBERON:0009881!5.24e-07!18;UBERON:0004141!5.24e-07!18;UBERON:0003084!5.24e-07!18;UBERON:0007005!5.24e-07!18;UBERON:0004139!5.24e-07!18;UBERON:0004291!5.24e-07!18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,3.30e-13,92;UBERON:0004121,1.43e-11,95;UBERON:0000924,1.43e-11,95;UBERON:0006601,1.43e-11,95;UBERON:0001016,2.21e-10,75;UBERON:0001017,4.37e-10,73;UBERON:0010371,9.66e-09,73;UBERON:0000073,1.24e-08,54;UBERON:0002346,1.96e-08,64;UBERON:0003075,1.96e-08,64;UBERON:0007284,1.96e-08,64;UBERON:0001049,6.72e-08,52;UBERON:0005068,6.72e-08,52;UBERON:0006241,6.72e-08,52;UBERON:0007135,6.72e-08,52;UBERON:0000955,4.23e-07,47;UBERON:0006238,4.23e-07,47;UBERON:0007100,4.93e-07,18;UBERON:0000948,4.93e-07,18;UBERON:0005498,4.93e-07,18;UBERON:0004140,4.93e-07,18;UBERON:0009881,4.93e-07,18;UBERON:0004141,4.93e-07,18;UBERON:0003084,4.93e-07,18;UBERON:0007005,4.93e-07,18;UBERON:0004139,4.93e-07,18;UBERON:0004291,4.93e-07,18;UBERON:0002616,6.49e-07,46 | |||
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| |||
|short_description=p1@Tmem38a | |||
}} |
Revision as of 16:05, 14 September 2013
Short description: | p1@Tmem38a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tmem38a_5end |
Coexpression cluster: | MCL_coexpression_mm9:14 |
Association with transcript: | -43bp_to_ENSMUST00000034244, NM_144534, uc009mgi.2_5end |
EntrezGene: | Tmem38a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 3.30e-13 | 92 |
ectoderm-derived structure | 1.43e-11 | 95 |
ectoderm | 1.43e-11 | 95 |
presumptive ectoderm | 1.43e-11 | 95 |
nervous system | 2.21e-10 | 75 |
central nervous system | 4.37e-10 | 73 |
ecto-epithelium | 9.66e-09 | 73 |
regional part of nervous system | 1.24e-08 | 54 |
neurectoderm | 1.96e-08 | 64 |
neural plate | 1.96e-08 | 64 |
presumptive neural plate | 1.96e-08 | 64 |
neural tube | 6.72e-08 | 52 |
neural rod | 6.72e-08 | 52 |
future spinal cord | 6.72e-08 | 52 |
neural keel | 6.72e-08 | 52 |
brain | 4.23e-07 | 47 |
future brain | 4.23e-07 | 47 |
primary circulatory organ | 4.93e-07 | 18 |
heart | 4.93e-07 | 18 |
primitive heart tube | 4.93e-07 | 18 |
primary heart field | 4.93e-07 | 18 |
anterior lateral plate mesoderm | 4.93e-07 | 18 |
heart tube | 4.93e-07 | 18 |
heart primordium | 4.93e-07 | 18 |
cardiac mesoderm | 4.93e-07 | 18 |
cardiogenic plate | 4.93e-07 | 18 |
heart rudiment | 4.93e-07 | 18 |
regional part of brain | 6.49e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.