FFCP PHASE1:Mm9::chr8:107800283..107800326,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=78688|HGNC=|MCL_coexpression_id=311|UniProt=Q9D1X0,Q53YU5|association_with_transcript=-20bp_to_ENSMUST00000014920,NM_030152,uc009ncd.1_5end|description=CAGE_peak_2_at_Nol3_5end|id=chr8:107800283..107800326,+|ontology_enrichment_celltype=CL:0000055!1.74e-09!50;CL:0002319!8.18e-09!43;CL:0000221!1.36e-08!44;CL:0000133!1.36e-08!44;CL:0000393!1.69e-07!39;CL:0000211!1.69e-07!39|ontology_enrichment_celltype_v019_2=CL:0002319,4.99e-09,43;CL:0000221,8.44e-09,44;CL:0000133,8.44e-09,44;CL:0000393,1.24e-07,39;CL:0000211,1.24e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.20e-18!75;UBERON:0001016!3.20e-18!75;UBERON:0004121!1.35e-17!102;UBERON:0000924!1.35e-17!102;UBERON:0006601!1.35e-17!102;UBERON:0001017!1.60e-17!73;UBERON:0005743!1.60e-17!73;UBERON:0000955!2.40e-12!50;UBERON:0006238!2.40e-12!50;UBERON:0001049!2.79e-12!52;UBERON:0005068!2.79e-12!52;UBERON:0006241!2.79e-12!52;UBERON:0007135!2.79e-12!52;UBERON:0002346!3.38e-12!71;UBERON:0003075!3.38e-12!71;UBERON:0007284!3.38e-12!71;UBERON:0002616!5.93e-12!49;UBERON:0000033!5.99e-12!63;UBERON:0002020!3.64e-09!34;UBERON:0003080!5.03e-09!40;UBERON:0004111!7.20e-09!122;UBERON:0003056!7.85e-09!49;UBERON:0000025!1.53e-08!114;UBERON:0002780!1.63e-08!39;UBERON:0001890!1.63e-08!39;UBERON:0006240!1.63e-08!39;UBERON:0002791!6.35e-08!29;UBERON:0003528!6.35e-08!29;UBERON:0001893!6.35e-08!29;UBERON:0000479!1.72e-07!349|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.55e-19,75;UBERON:0004121,6.97e-19,95;UBERON:0000924,6.97e-19,95;UBERON:0006601,6.97e-19,95;UBERON:0001017,2.54e-18,73;UBERON:0010314,3.47e-18,92;UBERON:0000073,4.13e-14,54;UBERON:0002346,1.22e-13,64;UBERON:0003075,1.22e-13,64;UBERON:0007284,1.22e-13,64;UBERON:0001049,5.24e-13,52;UBERON:0005068,5.24e-13,52;UBERON:0006241,5.24e-13,52;UBERON:0007135,5.24e-13,52;UBERON:0010371,5.66e-13,73;UBERON:0000955,1.83e-11,47;UBERON:0006238,1.83e-11,47;UBERON:0002616,4.68e-11,46;UBERON:0002020,1.17e-09,34;UBERON:0003080,1.63e-09,40;UBERON:0003056,3.44e-09,49;UBERON:0004111,4.29e-09,122;UBERON:0002780,5.75e-09,39;UBERON:0001890,5.75e-09,39;UBERON:0006240,5.75e-09,39;UBERON:0000025,8.30e-09,114;UBERON:0003528,2.50e-08,29;UBERON:0002791,2.50e-08,29;UBERON:0001893,2.50e-08,29;UBERON:0002021,5.21e-07,10;UBERON:0000411,5.21e-07,10;UBERON:0001950,5.21e-07,10;UBERON:0002619,7.71e-07,17|phase1_expression=0.480446541314382,0.697950815278722,0.454999239389536,0,0.500895729946347,0.16787927191189,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27268398936633,0.0992909512008853,0,0.47997726838022,0.45881856213434,0,0,0.430942465371778,0.190023419456374,0.252030129759931,0.665191531965914,0,1.84519436275371,0,0,0,0.204169356262369,0,0,0,0,0,0,4.78407908307194,4.25783111121961,2.9367480345869,16.4302182313088,4.79655344036982,7.0299578475031,4.47188767870852,4.05960622713551,2.87505128729943,0,0,0,4.88792928468299,12.3209379173665,5.15672092277442,4.45096213891115,4.23192783417626,0.633831403506179,2.37191172448392,1.77858959222228,2.2497492932035,4.94433181283487,0.7104801149461,7.78960287347852,9.22123932771731,1.03689612308478,1.21505344498522,0.420649922702764,13.139945282575,8.83474163806454,3.06226998037385,2.97120960156533,4.5960939330501,17.6185409599022,16.0886045987337,15.2070467923681,4.87979264601717,3.29355516968675,3.12548022334056,22.8930059181132,24.1987922313622,21.8501494320838,5.59794312399969,6.12198227436143,3.91438836233131,4.84647637332378,13.3005945787943,0.289864488701678,0.860423876981386,0,0,0.649776417447669,1.79210754838934,11.7973312910672,15.8500199997594,22.8611684050525,25.4404493647445,1.12674735821344,7.69958864485907,12.7402619853323,21.3320010945999,0.432982082022428,0.760079596425296,0.505524445014783,2.16949371466214,2.33044095282455,6.23456984072264,2.08182392119363,2.13125834818499,0.922461989024234,1.05505848386836,0.470354828542819,3.39299796590124,0.494389935468748,19.5209131841881,3.5384422077995,13.1031148457401,9.27534377533653,6.78825354389311,9.31958806090611,3.51336956413857,1.67557365450764,0.510914110417183,0,0,0,19.1732018438173,16.4700217014706,3.14135880282161,18.0777292999968,14.5757810678288,17.8697718321222,12.9793010454206,0.203678727700633,4.60305791257344,6.06534620240819,6.10281382070775,0.520481771850815,2.29902104433473,2.16074555766419,3.0140963567143,1.49680298132921,2.3060469651273,3.46696380870997,10.6068382002996,0,0.756424320671277,0.703804496655795,1.97276159184817,0.834141747676794,2.089512999133,4.11564272815887,0.199034266818493,0,0,0,1.03562886267751,1.17263029990548,2.52086886045421,3.78791576936336,6.88674811115913,4.31947916084659,6.51095045301142,11.8040296615832,8.17357396570186,15.6331857417806,20.8492679380451,29.4279778651456,29.8247974347678,26.126463719635,21.0704077453784,10.5144974282064,1.02904612379284,0.660837565967596,1.58670339998127,0.853153002140936,1.85789337488351,0.902072229254653,0,0.444756087689741,1.14135375667535,0,1.31759163779209,0.754005626400808,1.39269530428806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| ||
|EntrezGene=78688 | |||
|HGNC= | |||
|MCL_coexpression_id=311 | |||
|UniProt=Q9D1X0,Q53YU5 | |||
|association_with_transcript=-20bp_to_ENSMUST00000014920,NM_030152,uc009ncd.1_5end | |||
|description=CAGE_peak_2_at_Nol3_5end | |||
|id=chr8:107800283..107800326,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.74e-09!50;CL:0002319!8.18e-09!43;CL:0000221!1.36e-08!44;CL:0000133!1.36e-08!44;CL:0000393!1.69e-07!39;CL:0000211!1.69e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.99e-09,43;CL:0000221,8.44e-09,44;CL:0000133,8.44e-09,44;CL:0000393,1.24e-07,39;CL:0000211,1.24e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.20e-18!75;UBERON:0001016!3.20e-18!75;UBERON:0004121!1.35e-17!102;UBERON:0000924!1.35e-17!102;UBERON:0006601!1.35e-17!102;UBERON:0001017!1.60e-17!73;UBERON:0005743!1.60e-17!73;UBERON:0000955!2.40e-12!50;UBERON:0006238!2.40e-12!50;UBERON:0001049!2.79e-12!52;UBERON:0005068!2.79e-12!52;UBERON:0006241!2.79e-12!52;UBERON:0007135!2.79e-12!52;UBERON:0002346!3.38e-12!71;UBERON:0003075!3.38e-12!71;UBERON:0007284!3.38e-12!71;UBERON:0002616!5.93e-12!49;UBERON:0000033!5.99e-12!63;UBERON:0002020!3.64e-09!34;UBERON:0003080!5.03e-09!40;UBERON:0004111!7.20e-09!122;UBERON:0003056!7.85e-09!49;UBERON:0000025!1.53e-08!114;UBERON:0002780!1.63e-08!39;UBERON:0001890!1.63e-08!39;UBERON:0006240!1.63e-08!39;UBERON:0002791!6.35e-08!29;UBERON:0003528!6.35e-08!29;UBERON:0001893!6.35e-08!29;UBERON:0000479!1.72e-07!349 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.55e-19,75;UBERON:0004121,6.97e-19,95;UBERON:0000924,6.97e-19,95;UBERON:0006601,6.97e-19,95;UBERON:0001017,2.54e-18,73;UBERON:0010314,3.47e-18,92;UBERON:0000073,4.13e-14,54;UBERON:0002346,1.22e-13,64;UBERON:0003075,1.22e-13,64;UBERON:0007284,1.22e-13,64;UBERON:0001049,5.24e-13,52;UBERON:0005068,5.24e-13,52;UBERON:0006241,5.24e-13,52;UBERON:0007135,5.24e-13,52;UBERON:0010371,5.66e-13,73;UBERON:0000955,1.83e-11,47;UBERON:0006238,1.83e-11,47;UBERON:0002616,4.68e-11,46;UBERON:0002020,1.17e-09,34;UBERON:0003080,1.63e-09,40;UBERON:0003056,3.44e-09,49;UBERON:0004111,4.29e-09,122;UBERON:0002780,5.75e-09,39;UBERON:0001890,5.75e-09,39;UBERON:0006240,5.75e-09,39;UBERON:0000025,8.30e-09,114;UBERON:0003528,2.50e-08,29;UBERON:0002791,2.50e-08,29;UBERON:0001893,2.50e-08,29;UBERON:0002021,5.21e-07,10;UBERON:0000411,5.21e-07,10;UBERON:0001950,5.21e-07,10;UBERON:0002619,7.71e-07,17 | |||
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| |||
|short_description=p2@Nol3 | |||
}} |
Revision as of 14:34, 14 September 2013
Short description: | p2@Nol3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nol3_5end |
Coexpression cluster: | MCL_coexpression_mm9:311 |
Association with transcript: | -20bp_to_ENSMUST00000014920, NM_030152, uc009ncd.1_5end |
EntrezGene: | Nol3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.99e-09 | 43 |
ectodermal cell | 8.44e-09 | 44 |
neurectodermal cell | 8.44e-09 | 44 |
electrically responsive cell | 1.24e-07 | 39 |
electrically active cell | 1.24e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.55e-19 | 75 |
ectoderm-derived structure | 6.97e-19 | 95 |
ectoderm | 6.97e-19 | 95 |
presumptive ectoderm | 6.97e-19 | 95 |
central nervous system | 2.54e-18 | 73 |
structure with developmental contribution from neural crest | 3.47e-18 | 92 |
regional part of nervous system | 4.13e-14 | 54 |
neurectoderm | 1.22e-13 | 64 |
neural plate | 1.22e-13 | 64 |
presumptive neural plate | 1.22e-13 | 64 |
neural tube | 5.24e-13 | 52 |
neural rod | 5.24e-13 | 52 |
future spinal cord | 5.24e-13 | 52 |
neural keel | 5.24e-13 | 52 |
ecto-epithelium | 5.66e-13 | 73 |
brain | 1.83e-11 | 47 |
future brain | 1.83e-11 | 47 |
regional part of brain | 4.68e-11 | 46 |
gray matter | 1.17e-09 | 34 |
anterior neural tube | 1.63e-09 | 40 |
pre-chordal neural plate | 3.44e-09 | 49 |
anatomical conduit | 4.29e-09 | 122 |
regional part of forebrain | 5.75e-09 | 39 |
forebrain | 5.75e-09 | 39 |
future forebrain | 5.75e-09 | 39 |
tube | 8.30e-09 | 114 |
brain grey matter | 2.50e-08 | 29 |
regional part of telencephalon | 2.50e-08 | 29 |
telencephalon | 2.50e-08 | 29 |
occipital lobe | 5.21e-07 | 10 |
visual cortex | 5.21e-07 | 10 |
neocortex | 5.21e-07 | 10 |
regional part of cerebral cortex | 7.71e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.