FFCP PHASE1:Mm9::chr8:106919773..106919786,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=97487|HGNC=|UniProt=Q8CJ61|association_with_transcript=-66bp_to_NM_153582_5end|description=CAGE_peak_2_at_Cmtm4_5end|id=chr8:106919773..106919786,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000075,7.66e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!9.71e-12!52;UBERON:0005068!9.71e-12!52;UBERON:0006241!9.71e-12!52;UBERON:0007135!9.71e-12!52;UBERON:0002346!1.24e-10!71;UBERON:0003075!1.24e-10!71;UBERON:0007284!1.24e-10!71;UBERON:0002020!6.91e-10!34;UBERON:0003080!1.58e-09!40;UBERON:0000073!2.70e-09!75;UBERON:0001016!2.70e-09!75;UBERON:0002616!3.00e-09!49;UBERON:0002780!3.79e-09!39;UBERON:0001890!3.79e-09!39;UBERON:0006240!3.79e-09!39;UBERON:0001017!6.23e-09!73;UBERON:0005743!6.23e-09!73;UBERON:0003056!7.03e-09!49;UBERON:0000955!1.37e-08!50;UBERON:0006238!1.37e-08!50;UBERON:0004121!1.96e-08!102;UBERON:0000924!1.96e-08!102;UBERON:0006601!1.96e-08!102;UBERON:0000033!5.21e-08!63;UBERON:0002791!2.38e-07!29;UBERON:0003528!2.38e-07!29;UBERON:0001893!2.38e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.07e-12,54;UBERON:0001049,8.13e-11,52;UBERON:0005068,8.13e-11,52;UBERON:0006241,8.13e-11,52;UBERON:0007135,8.13e-11,52;UBERON:0002020,3.60e-10,34;UBERON:0002346,1.08e-08,64;UBERON:0003075,1.08e-08,64;UBERON:0007284,1.08e-08,64;UBERON:0001016,1.11e-08,75;UBERON:0001017,3.20e-08,73;UBERON:0002616,3.69e-08,46;UBERON:0003080,4.03e-08,40;UBERON:0000955,8.48e-08,47;UBERON:0006238,8.48e-08,47;UBERON:0002780,1.18e-07,39;UBERON:0001890,1.18e-07,39;UBERON:0006240,1.18e-07,39;UBERON:0003056,4.51e-07,49;UBERON:0004121,5.54e-07,95;UBERON:0000924,5.54e-07,95;UBERON:0006601,5.54e-07,95;UBERON:0010371,6.29e-07,73;UBERON:0003528,6.76e-07,29;UBERON:0002791,6.76e-07,29;UBERON:0001893,6.76e-07,29|phase1_expression=0.80074423552397,2.09385244583617,5.45999087267443,2.41971369045464,1.50268718983904,1.6787927191189,1.63528848416868,0,0.140788722151667,0.468129052643987,0,0.398860794976682,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0.935476191661768,0,0,1.11994695955385,1.83527424853736,3.44539178469012,2.58457197695445,1.50829862880122,0.950117097281869,0.252030129759931,1.33038306393183,0,0,0,0.577703239502549,0.831173226792462,0.612508068787107,0,0,0,0,0,0,0.251793635951155,0.506884656097573,1.28482726513177,0,1.09012578190223,1.09843091367236,0.58328969722285,0.55994568650145,0,0,0,0,0.514518872071894,0,0.515672092277442,0.809265843438391,0.528990979272033,3.1691570175309,0.677689064138264,0.889294796111139,0.449949858640699,0,0,2.39680088414724,2.30530983192933,1.34796496001021,0.945041568321835,0.420649922702764,2.28520787523043,2.20868540951614,0.979926393719632,1.0543001812006,1.83843757322004,0,1.65993539510744,1.38245879930619,1.31886287730194,1.18933936683133,0.52091337055676,1.95428099300967,1.68828783009504,1.5279824777681,2.35702868378934,1.56608848879013,1.67759501242771,1.06016670666458,1.058001841495,0.289864488701678,0,0,0.539703191637817,0.649776417447669,0.448026887097336,0.280888840263504,0.340860645156116,0,1.06001872353102,1.54927761754349,1.28326477414318,0,0,0.649473123033642,0.506719730950197,0.505524445014783,0.5709193985953,0,0.890652834388949,1.04091196059682,0.304465478312141,1.38369298353635,0.60289056221049,0.705532242814229,0.879666139307728,2.47194967734374,0.144599356919912,0,0,0.220841518460394,0,0,0.292780797011547,0.628340120440365,0.255457055208591,0,0,0,1.49790639404823,0.457500602818626,2.1361239859187,1.21677024134594,1.02286182932132,1.0389402227978,1.1356888414743,1.12023300235348,0.497627882440372,1.0108910337347,1.05220927943237,0.650602214813519,0.459804208866946,1.26043490863744,0.60281927134286,0.408218994907967,0.896796041993948,1.68663104207512,0,0.862271971731369,1.51284864134255,1.23165786914764,0.43839146485515,1.39023624612799,0,0.823128545631774,1.39323986772945,0,0,0,0.414251545071004,0.234526059981096,0.900310307305074,1.42046841351126,0.196764231747404,1.23413690309903,0.697601834251224,1.3413670069981,0.467061369468678,0,0.32833492815819,0.648550476366846,0.292399974850665,0.439100230582101,0.268412837520744,1.05144974282064,1.3377599609307,0.991256348951394,0.264450566663544,0.639864751605702,0.696710015581316,1.41754207454303,1.21010114774006,0.667134131534611,1.33157938278791,0,0.658795818896044,0.502670417600539,0.795825888164603,0.38992817423824,1.79763881730844,1.72910439899755,0.796565093017469,1.51734320762465,0.913988100877831,1.1270773567308,1.62921062276251,1.16371492300575,1.1221731182451,2.02356918797623,0.738050739898011,1.255989822731,0.740382983530803,0,0,0.589676985339609,0,0,0.241177159752417,0.50925170356284,0,0.324270453550071,0.274561413188081,0,0.372140947668503,0.624075346229121,0,0.179397413521912,0.482443521363367,0.554259570499814,0.568474235311454,0.651859905768103,1.01847051465113,0.469380496577004,0.670025029767263,0.238043640886014,0.585400943573396,0.315270288212382,0,0.478364305972461,0.655453258862952,0.518054945597687,0.14464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| ||
|EntrezGene=97487 | |||
|HGNC= | |||
|UniProt=Q8CJ61 | |||
|association_with_transcript=-66bp_to_NM_153582_5end | |||
|description=CAGE_peak_2_at_Cmtm4_5end | |||
|id=chr8:106919773..106919786,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000075,7.66e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.71e-12!52;UBERON:0005068!9.71e-12!52;UBERON:0006241!9.71e-12!52;UBERON:0007135!9.71e-12!52;UBERON:0002346!1.24e-10!71;UBERON:0003075!1.24e-10!71;UBERON:0007284!1.24e-10!71;UBERON:0002020!6.91e-10!34;UBERON:0003080!1.58e-09!40;UBERON:0000073!2.70e-09!75;UBERON:0001016!2.70e-09!75;UBERON:0002616!3.00e-09!49;UBERON:0002780!3.79e-09!39;UBERON:0001890!3.79e-09!39;UBERON:0006240!3.79e-09!39;UBERON:0001017!6.23e-09!73;UBERON:0005743!6.23e-09!73;UBERON:0003056!7.03e-09!49;UBERON:0000955!1.37e-08!50;UBERON:0006238!1.37e-08!50;UBERON:0004121!1.96e-08!102;UBERON:0000924!1.96e-08!102;UBERON:0006601!1.96e-08!102;UBERON:0000033!5.21e-08!63;UBERON:0002791!2.38e-07!29;UBERON:0003528!2.38e-07!29;UBERON:0001893!2.38e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.07e-12,54;UBERON:0001049,8.13e-11,52;UBERON:0005068,8.13e-11,52;UBERON:0006241,8.13e-11,52;UBERON:0007135,8.13e-11,52;UBERON:0002020,3.60e-10,34;UBERON:0002346,1.08e-08,64;UBERON:0003075,1.08e-08,64;UBERON:0007284,1.08e-08,64;UBERON:0001016,1.11e-08,75;UBERON:0001017,3.20e-08,73;UBERON:0002616,3.69e-08,46;UBERON:0003080,4.03e-08,40;UBERON:0000955,8.48e-08,47;UBERON:0006238,8.48e-08,47;UBERON:0002780,1.18e-07,39;UBERON:0001890,1.18e-07,39;UBERON:0006240,1.18e-07,39;UBERON:0003056,4.51e-07,49;UBERON:0004121,5.54e-07,95;UBERON:0000924,5.54e-07,95;UBERON:0006601,5.54e-07,95;UBERON:0010371,6.29e-07,73;UBERON:0003528,6.76e-07,29;UBERON:0002791,6.76e-07,29;UBERON:0001893,6.76e-07,29 | |||
|phase1_expression=0.80074423552397,2.09385244583617,5.45999087267443,2.41971369045464,1.50268718983904,1.6787927191189,1.63528848416868,0,0.140788722151667,0.468129052643987,0,0.398860794976682,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0.935476191661768,0,0,1.11994695955385,1.83527424853736,3.44539178469012,2.58457197695445,1.50829862880122,0.950117097281869,0.252030129759931,1.33038306393183,0,0,0,0.577703239502549,0.831173226792462,0.612508068787107,0,0,0,0,0,0,0.251793635951155,0.506884656097573,1.28482726513177,0,1.09012578190223,1.09843091367236,0.58328969722285,0.55994568650145,0,0,0,0,0.514518872071894,0,0.515672092277442,0.809265843438391,0.528990979272033,3.1691570175309,0.677689064138264,0.889294796111139,0.449949858640699,0,0,2.39680088414724,2.30530983192933,1.34796496001021,0.945041568321835,0.420649922702764,2.28520787523043,2.20868540951614,0.979926393719632,1.0543001812006,1.83843757322004,0,1.65993539510744,1.38245879930619,1.31886287730194,1.18933936683133,0.52091337055676,1.95428099300967,1.68828783009504,1.5279824777681,2.35702868378934,1.56608848879013,1.67759501242771,1.06016670666458,1.058001841495,0.289864488701678,0,0,0.539703191637817,0.649776417447669,0.448026887097336,0.280888840263504,0.340860645156116,0,1.06001872353102,1.54927761754349,1.28326477414318,0,0,0.649473123033642,0.506719730950197,0.505524445014783,0.5709193985953,0,0.890652834388949,1.04091196059682,0.304465478312141,1.38369298353635,0.60289056221049,0.705532242814229,0.879666139307728,2.47194967734374,0.144599356919912,0,0,0.220841518460394,0,0,0.292780797011547,0.628340120440365,0.255457055208591,0,0,0,1.49790639404823,0.457500602818626,2.1361239859187,1.21677024134594,1.02286182932132,1.0389402227978,1.1356888414743,1.12023300235348,0.497627882440372,1.0108910337347,1.05220927943237,0.650602214813519,0.459804208866946,1.26043490863744,0.60281927134286,0.408218994907967,0.896796041993948,1.68663104207512,0,0.862271971731369,1.51284864134255,1.23165786914764,0.43839146485515,1.39023624612799,0,0.823128545631774,1.39323986772945,0,0,0,0.414251545071004,0.234526059981096,0.900310307305074,1.42046841351126,0.196764231747404,1.23413690309903,0.697601834251224,1.3413670069981,0.467061369468678,0,0.32833492815819,0.648550476366846,0.292399974850665,0.439100230582101,0.268412837520744,1.05144974282064,1.3377599609307,0.991256348951394,0.264450566663544,0.639864751605702,0.696710015581316,1.41754207454303,1.21010114774006,0.667134131534611,1.33157938278791,0,0.658795818896044,0.502670417600539,0.795825888164603,0.38992817423824,1.79763881730844,1.72910439899755,0.796565093017469,1.51734320762465,0.913988100877831,1.1270773567308,1.62921062276251,1.16371492300575,1.1221731182451,2.02356918797623,0.738050739898011,1.255989822731,0.740382983530803,0,0,0.589676985339609,0,0,0.241177159752417,0.50925170356284,0,0.324270453550071,0.274561413188081,0,0.372140947668503,0.624075346229121,0,0.179397413521912,0.482443521363367,0.554259570499814,0.568474235311454,0.651859905768103,1.01847051465113,0.469380496577004,0.670025029767263,0.238043640886014,0.585400943573396,0.315270288212382,0,0.478364305972461,0.655453258862952,0.518054945597687,0.144649058581512,0,0,0,0.275936746304732,1.28440471990234,1.75817529888305,1.47541450839008,0,0.631016438832513,0.390438744296638,0.430846795465598,0.238968797952552,0.222798674082394,0.566153061577665,0.404810701674894,0,0.395287777946524,0,0.709700426041343,0.890328018336276,0.651547837414304,0.494910368917606,1.32745138339963,0.728341908464944,1.209294227859,2.07465587731488,1.18120757152309,1.53717573971964,0.775284879504663,1.81766864738753,1.06949213515416,0.632073515871632,0,1.03135543248187,1.36175842301515,1.08036656418786,0.776152102696527,0.857348140126369,2.12808280370728,1.96205699362278,0.987294123612726,0.608929898229199,1.64270195644597,10.1679394014634,0.882113592219848,0.16488625294148,0.968786560175433,0.542816324353403,0.358117032009409,0.492422699235184,0.291480836629851,0.927126510052548,0,0.82554747185289,0.185194527369712,0,0,0.457556346413045,0,0,0,2.86401185404534,1.10717597753397,0.813277868507395,1.18805874903981,0.418176592028937,1.52853794622324,0.944050424693745,0.578574190077352,0.26175594198403,1.55537967950151,0.621339313086926,0,0.598066184175915,1.65458490457098,0.388902376688095,1.29159823477731,0.844780627453891,0.938857909166032,1.3020438484395,1.04859344425711,0,0.864090018773596,0.316011120628178,0,0.308132871494482,0.25984164595559,0,0.198681354781265,0,0.295379054349154,0.201932899896295,0.0762068066549998,0,0,0.0962118416403295,0.116876902181569,0,1.99787358036658,1.16628013592318,1.17519231454855,1.35232715822533,0.375364950902364,1.09890974560359,1.07184189539533,1.00314420807073,1.6942555278512,1.38097570952153,2.29158205375759,1.71853182343688,2.74033007908257,0.755393897389701,2.02506750069542,0.900642406448441,0.453142408984205,1.55328093525546,0.93408612825759,0.399024873401031,0.341467211508268,0.243106717068294,0.628839487883947,0.55153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| |||
|short_description=p2@Cmtm4 | |||
}} | |||
Revision as of 14:33, 14 September 2013
| Short description: | p2@Cmtm4 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Cmtm4_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -66bp_to_NM_153582_5end |
| EntrezGene: | Cmtm4 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| columnar/cuboidal epithelial cell | 7.66e-07 | 7 |
| Ontology term | p-value | n |
|---|---|---|
| regional part of nervous system | 7.07e-12 | 54 |
| neural tube | 8.13e-11 | 52 |
| neural rod | 8.13e-11 | 52 |
| future spinal cord | 8.13e-11 | 52 |
| neural keel | 8.13e-11 | 52 |
| gray matter | 3.60e-10 | 34 |
| neurectoderm | 1.08e-08 | 64 |
| neural plate | 1.08e-08 | 64 |
| presumptive neural plate | 1.08e-08 | 64 |
| nervous system | 1.11e-08 | 75 |
| central nervous system | 3.20e-08 | 73 |
| regional part of brain | 3.69e-08 | 46 |
| anterior neural tube | 4.03e-08 | 40 |
| brain | 8.48e-08 | 47 |
| future brain | 8.48e-08 | 47 |
| regional part of forebrain | 1.18e-07 | 39 |
| forebrain | 1.18e-07 | 39 |
| future forebrain | 1.18e-07 | 39 |
| pre-chordal neural plate | 4.51e-07 | 49 |
| ectoderm-derived structure | 5.54e-07 | 95 |
| ectoderm | 5.54e-07 | 95 |
| presumptive ectoderm | 5.54e-07 | 95 |
| ecto-epithelium | 6.29e-07 | 73 |
| brain grey matter | 6.76e-07 | 29 |
| regional part of telencephalon | 6.76e-07 | 29 |
| telencephalon | 6.76e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
