FFCP PHASE1:Mm9::chr7:96666638..96666659,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=636|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:96666638..96666659,-|id=chr7:96666638..96666659,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000222,3.31e-19,7;CL:0000128,1.85e-17,6;CL:0000126,1.85e-17,6;CL:0000127,1.85e-17,6;CL:0002453,3.04e-17,8;CL:0000680,4.21e-17,6;CL:0000187,4.21e-17,6;CL:0000056,4.21e-17,6;CL:0000333,1.41e-13,10;CL:0000095,1.41e-13,10;CL:0000243,1.41e-13,10;CL:0000123,1.41e-13,10;CL:0000125,1.41e-13,10;CL:0000030,1.41e-13,10;CL:0000339,1.41e-13,10;CL:0000355,3.71e-11,9;CL:0002494,1.03e-09,3;CL:0000737,1.03e-09,3;CL:0000746,1.03e-09,3;CL:0000513,1.03e-09,3;CL:0000192,5.03e-09,3;CL:0000359,5.03e-09,3;CL:0002539,5.03e-09,3;CL:0000514,5.03e-09,3;CL:0002321,5.23e-08,70;CL:0002605,3.27e-07,2;CL:0002604,3.27e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0007524,4.31e-12,11;UBERON:0003077,4.31e-12,11;UBERON:0007285,4.31e-12,11;UBERON:0001134,3.71e-11,9;UBERON:0002036,3.71e-11,9;UBERON:0002385,3.71e-11,9;UBERON:0000486,3.71e-11,9;UBERON:0007503,3.71e-11,9;UBERON:0001015,3.71e-11,9;UBERON:0002329,3.71e-11,9;UBERON:0003082,3.71e-11,9;UBERON:0003059,3.71e-11,9;UBERON:0007282,3.71e-11,9;UBERON:0004290,3.71e-11,9;UBERON:0009618,3.71e-11,9;UBERON:0000383,5.75e-10,10;UBERON:0001135,5.03e-09,3;UBERON:0004237,5.03e-09,3;UBERON:0004695,5.03e-09,3;UBERON:0002111,5.03e-09,3;UBERON:0004178,5.03e-09,3;UBERON:0000055,6.59e-09,5;UBERON:0007500,6.59e-09,5;UBERON:0001981,6.59e-09,5;UBERON:0002049,6.59e-09,5;UBERON:0007798,6.59e-09,5;UBERON:0004537,6.59e-09,5;UBERON:0006965,6.59e-09,5;UBERON:0000947,7.42e-07,4;UBERON:0001637,7.42e-07,4;UBERON:0004573,7.42e-07,4;UBERON:0003509,7.42e-07,4;UBERON:0004571,7.42e-07,4;UBERON:0010191,7.42e-07,4;UBERON:0004572,7.42e-07,4|phase1_expression=0.960893082628764,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0.68822784320151,0,0,0.215471232685889,2.28028103347649,1.76421090831952,0.443461021310609,0,0,0,0.577703239502549,0.332469290716985,0.408338712524738,0,0,0,0,0,0,6.92432498865675,6.08261587317087,1.83546752161682,3.12956537739216,6.32272953503295,19.1126978978991,23.9148775861369,3.63964696225943,14.3752564364972,0,0,0,6.94600477297057,8.30946975822394,9.7977697532714,0.809265843438391,0.528990979272033,0.633831403506179,2.03306719241479,0.889294796111139,0,0,0.7104801149461,2.69640099466564,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0.0914876436024097,0,0,0.56276261003168,0.30559649555362,0,0.427115042397309,0,0.454357159999104,0.302286240427142,1.73918693221007,0.860423876981386,0,0,0,0,0.140444420131752,4.60161870960756,2.59786004602869,1.7666978725517,3.66192891419369,6.41632387071589,0,0,0.432982082022428,0.760079596425296,1.01104889002957,0.22836775943812,0,0.148442139064825,0.173485326766136,0,0,0.150722640552623,0.587943535678524,0.251333182659351,1.23597483867187,0.289198713839823,0,0.485300549842228,0.220841518460394,0,0,0.585561594023094,0,0.255457055208591,0,0,0,0.449371918214468,0.457500602818626,0.125654352112864,0.695297280769106,0.767146371990992,0.20778804455956,0.324482526135515,0.509196819251581,0.497627882440372,0.252722758433675,0.631325567659422,0.780722657776222,0.229902104433473,0.360124259610698,0.150704817835715,0.680364991513279,0.640568601424249,0.655912071918102,0.517406741478031,0,0,0,0,0,0,0.411564272815887,0,0,0,0,0.621377317606506,0,0.540186184383045,0,0,0.308534225774757,0,0,0,0.16455984991348,0.32833492815819,0.243206428637567,0.438599962275997,0.439100230582101,0.134206418760372,0.630869845692382,0,0,0,0.426576501070468,0,0.128867461322093,0.201683524623343,0,0.190225626112559,0,0.329397909448022,0.251335208800269,0.596869416123452,0.38992817423824,0,0.432276099749388,0.597423819763102,0.189667900953082,0.342745537829186,1.1270773567308,0,0.193952487167626,0.0701358198903186,0.379419222745544,0.147610147979602,0.627994911365499,0.493588655687202,0,0.166845105716094,0,0,0,0,0,0,0.324270453550071,0,0,0,0,0,0.179397413521912,0,0.739012760666419,0,0,0,0.234690248288502,0.167506257441816,0,0.390267295715598,0.472905432318573,0.8858587585951,0.159454768657487,0.327726629431476,0.518054945597687,0.289298117163023,0,0,0,0.275936746304732,0.321101179975584,0.117211686592203,1.14754461763673,0.757412781613119,0.94652465824877,0,0,0,0.445597348164788,0,0.809621403349789,0.292255857911312,0.395287777946524,2.57057053137446,0.99358059645788,0.712262414669021,0.81443479676788,0.164970122972535,0,0.971122544619926,0.604647113929502,0.188605079755898,0.590603785761546,0,0.775284879504663,0,0,0.316036757935816,1.05418608574999,0,0,0.18006109403131,0.388076051348264,0.643011105094777,0.354680467284547,0.178368817602071,0.822745103010605,0,0,0.21183207086382,0.441056796109924,0.65954501176592,0.807322133479528,0.422190474497091,0.238744688006273,0.328281799490123,0,0,0,0.206386867963223,0,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0.108005340821801,0,0.218362563746178,0,0.330613822901344,1.83229159388821,0.648074866458964,3.10669656543463,0,0.149516546043979,0.165458490457098,0.194451188344048,0,0,0,0.2604087696879,0.104859344425711,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680191150845634,0,0,0,0.579568782096571,2.25218970541418,0.915758121336325,1.2862102744744,2.50786052017682,0,0,0.572895513439397,0.68741272937475,0,0.755393897389701,0,0,0,0,0,0,0.512200817262403,0.243106717068294,0,0,0.222246727801615,0.618105171716683,0.962757628775446,0,0.50695859978048,0.943131706930381,0.468207537349412,0.256100609619477,0.287177344778066,0,0.231768651889711,0,0.824171801606613,0.147198920134397,0,0.177475806159338,0.238436189947321,0.436039249896986,0.376437521661322,0.0846146078916765,0,0.263069711437843,0.679020569229309,1.12228454331548,0.474540072496697,0.29551344712669,0,0.309873682371932,0.385813221962283,0.749431733813838,0,0.214871054048298,0.57386499620653,0.220591419119515,0.231867835620421|short_description=p@chr7:96666638..96666659,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=636 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:96666638..96666659,- | |||
|id=chr7:96666638..96666659,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.31e-19,7;CL:0000128,1.85e-17,6;CL:0000126,1.85e-17,6;CL:0000127,1.85e-17,6;CL:0002453,3.04e-17,8;CL:0000680,4.21e-17,6;CL:0000187,4.21e-17,6;CL:0000056,4.21e-17,6;CL:0000333,1.41e-13,10;CL:0000095,1.41e-13,10;CL:0000243,1.41e-13,10;CL:0000123,1.41e-13,10;CL:0000125,1.41e-13,10;CL:0000030,1.41e-13,10;CL:0000339,1.41e-13,10;CL:0000355,3.71e-11,9;CL:0002494,1.03e-09,3;CL:0000737,1.03e-09,3;CL:0000746,1.03e-09,3;CL:0000513,1.03e-09,3;CL:0000192,5.03e-09,3;CL:0000359,5.03e-09,3;CL:0002539,5.03e-09,3;CL:0000514,5.03e-09,3;CL:0002321,5.23e-08,70;CL:0002605,3.27e-07,2;CL:0002604,3.27e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,4.31e-12,11;UBERON:0003077,4.31e-12,11;UBERON:0007285,4.31e-12,11;UBERON:0001134,3.71e-11,9;UBERON:0002036,3.71e-11,9;UBERON:0002385,3.71e-11,9;UBERON:0000486,3.71e-11,9;UBERON:0007503,3.71e-11,9;UBERON:0001015,3.71e-11,9;UBERON:0002329,3.71e-11,9;UBERON:0003082,3.71e-11,9;UBERON:0003059,3.71e-11,9;UBERON:0007282,3.71e-11,9;UBERON:0004290,3.71e-11,9;UBERON:0009618,3.71e-11,9;UBERON:0000383,5.75e-10,10;UBERON:0001135,5.03e-09,3;UBERON:0004237,5.03e-09,3;UBERON:0004695,5.03e-09,3;UBERON:0002111,5.03e-09,3;UBERON:0004178,5.03e-09,3;UBERON:0000055,6.59e-09,5;UBERON:0007500,6.59e-09,5;UBERON:0001981,6.59e-09,5;UBERON:0002049,6.59e-09,5;UBERON:0007798,6.59e-09,5;UBERON:0004537,6.59e-09,5;UBERON:0006965,6.59e-09,5;UBERON:0000947,7.42e-07,4;UBERON:0001637,7.42e-07,4;UBERON:0004573,7.42e-07,4;UBERON:0003509,7.42e-07,4;UBERON:0004571,7.42e-07,4;UBERON:0010191,7.42e-07,4;UBERON:0004572,7.42e-07,4 | |||
|phase1_expression=0.960893082628764,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0.68822784320151,0,0,0.215471232685889,2.28028103347649,1.76421090831952,0.443461021310609,0,0,0,0.577703239502549,0.332469290716985,0.408338712524738,0,0,0,0,0,0,6.92432498865675,6.08261587317087,1.83546752161682,3.12956537739216,6.32272953503295,19.1126978978991,23.9148775861369,3.63964696225943,14.3752564364972,0,0,0,6.94600477297057,8.30946975822394,9.7977697532714,0.809265843438391,0.528990979272033,0.633831403506179,2.03306719241479,0.889294796111139,0,0,0.7104801149461,2.69640099466564,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0.0914876436024097,0,0,0.56276261003168,0.30559649555362,0,0.427115042397309,0,0.454357159999104,0.302286240427142,1.73918693221007,0.860423876981386,0,0,0,0,0.140444420131752,4.60161870960756,2.59786004602869,1.7666978725517,3.66192891419369,6.41632387071589,0,0,0.432982082022428,0.760079596425296,1.01104889002957,0.22836775943812,0,0.148442139064825,0.173485326766136,0,0,0.150722640552623,0.587943535678524,0.251333182659351,1.23597483867187,0.289198713839823,0,0.485300549842228,0.220841518460394,0,0,0.585561594023094,0,0.255457055208591,0,0,0,0.449371918214468,0.457500602818626,0.125654352112864,0.695297280769106,0.767146371990992,0.20778804455956,0.324482526135515,0.509196819251581,0.497627882440372,0.252722758433675,0.631325567659422,0.780722657776222,0.229902104433473,0.360124259610698,0.150704817835715,0.680364991513279,0.640568601424249,0.655912071918102,0.517406741478031,0,0,0,0,0,0,0.411564272815887,0,0,0,0,0.621377317606506,0,0.540186184383045,0,0,0.308534225774757,0,0,0,0.16455984991348,0.32833492815819,0.243206428637567,0.438599962275997,0.439100230582101,0.134206418760372,0.630869845692382,0,0,0,0.426576501070468,0,0.128867461322093,0.201683524623343,0,0.190225626112559,0,0.329397909448022,0.251335208800269,0.596869416123452,0.38992817423824,0,0.432276099749388,0.597423819763102,0.189667900953082,0.342745537829186,1.1270773567308,0,0.193952487167626,0.0701358198903186,0.379419222745544,0.147610147979602,0.627994911365499,0.493588655687202,0,0.166845105716094,0,0,0,0,0,0,0.324270453550071,0,0,0,0,0,0.179397413521912,0,0.739012760666419,0,0,0,0.234690248288502,0.167506257441816,0,0.390267295715598,0.472905432318573,0.8858587585951,0.159454768657487,0.327726629431476,0.518054945597687,0.289298117163023,0,0,0,0.275936746304732,0.321101179975584,0.117211686592203,1.14754461763673,0.757412781613119,0.94652465824877,0,0,0,0.445597348164788,0,0.809621403349789,0.292255857911312,0.395287777946524,2.57057053137446,0.99358059645788,0.712262414669021,0.81443479676788,0.164970122972535,0,0.971122544619926,0.604647113929502,0.188605079755898,0.590603785761546,0,0.775284879504663,0,0,0.316036757935816,1.05418608574999,0,0,0.18006109403131,0.388076051348264,0.643011105094777,0.354680467284547,0.178368817602071,0.822745103010605,0,0,0.21183207086382,0.441056796109924,0.65954501176592,0.807322133479528,0.422190474497091,0.238744688006273,0.328281799490123,0,0,0,0.206386867963223,0,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0.108005340821801,0,0.218362563746178,0,0.330613822901344,1.83229159388821,0.648074866458964,3.10669656543463,0,0.149516546043979,0.165458490457098,0.194451188344048,0,0,0,0.2604087696879,0.104859344425711,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680191150845634,0,0,0,0.579568782096571,2.25218970541418,0.915758121336325,1.2862102744744,2.50786052017682,0,0,0.572895513439397,0.68741272937475,0,0.755393897389701,0,0,0,0,0,0,0.512200817262403,0.243106717068294,0,0,0.222246727801615,0.618105171716683,0.962757628775446,0,0.50695859978048,0.943131706930381,0.468207537349412,0.256100609619477,0.287177344778066,0,0.231768651889711,0,0.824171801606613,0.147198920134397,0,0.177475806159338,0.238436189947321,0.436039249896986,0.376437521661322,0.0846146078916765,0,0.263069711437843,0.679020569229309,1.12228454331548,0.474540072496697,0.29551344712669,0,0.309873682371932,0.385813221962283,0.749431733813838,0,0.214871054048298,0.57386499620653,0.220591419119515,0.231867835620421 | |||
|short_description=p@chr7:96666638..96666659,- | |||
}} |
Revision as of 14:26, 14 September 2013
Short description: | p@chr7:96666638..96666659, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:96666638..96666659, - |
Coexpression cluster: | MCL_coexpression_mm9:636 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.31e-19 | 7 |
oligodendrocyte | 1.85e-17 | 6 |
macroglial cell | 1.85e-17 | 6 |
astrocyte | 1.85e-17 | 6 |
oligodendrocyte precursor cell | 3.04e-17 | 8 |
muscle precursor cell | 4.21e-17 | 6 |
muscle cell | 4.21e-17 | 6 |
myoblast | 4.21e-17 | 6 |
migratory neural crest cell | 1.41e-13 | 10 |
neuron associated cell | 1.41e-13 | 10 |
glial cell (sensu Vertebrata) | 1.41e-13 | 10 |
neuron associated cell (sensu Vertebrata) | 1.41e-13 | 10 |
glial cell | 1.41e-13 | 10 |
glioblast | 1.41e-13 | 10 |
glioblast (sensu Vertebrata) | 1.41e-13 | 10 |
multi-potent skeletal muscle stem cell | 3.71e-11 | 9 |
cardiocyte | 1.03e-09 | 3 |
striated muscle cell | 1.03e-09 | 3 |
cardiac muscle cell | 1.03e-09 | 3 |
cardiac muscle myoblast | 1.03e-09 | 3 |
smooth muscle cell | 5.03e-09 | 3 |
vascular associated smooth muscle cell | 5.03e-09 | 3 |
aortic smooth muscle cell | 5.03e-09 | 3 |
smooth muscle myoblast | 5.03e-09 | 3 |
embryonic cell | 5.23e-08 | 70 |
astrocyte of the cerebral cortex | 3.27e-07 | 2 |
astrocyte of the hippocampus | 3.27e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 4.31e-12 | 11 |
paraxial mesoderm | 4.31e-12 | 11 |
presumptive paraxial mesoderm | 4.31e-12 | 11 |
skeletal muscle tissue | 3.71e-11 | 9 |
striated muscle tissue | 3.71e-11 | 9 |
muscle tissue | 3.71e-11 | 9 |
multilaminar epithelium | 3.71e-11 | 9 |
epithelial vesicle | 3.71e-11 | 9 |
musculature | 3.71e-11 | 9 |
somite | 3.71e-11 | 9 |
myotome | 3.71e-11 | 9 |
presomitic mesoderm | 3.71e-11 | 9 |
presumptive segmental plate | 3.71e-11 | 9 |
dermomyotome | 3.71e-11 | 9 |
trunk paraxial mesoderm | 3.71e-11 | 9 |
musculature of body | 5.75e-10 | 10 |
smooth muscle tissue | 5.03e-09 | 3 |
blood vessel smooth muscle | 5.03e-09 | 3 |
arterial system smooth muscle | 5.03e-09 | 3 |
artery smooth muscle tissue | 5.03e-09 | 3 |
aorta smooth muscle tissue | 5.03e-09 | 3 |
vessel | 6.59e-09 | 5 |
epithelial tube open at both ends | 6.59e-09 | 5 |
blood vessel | 6.59e-09 | 5 |
vasculature | 6.59e-09 | 5 |
vascular system | 6.59e-09 | 5 |
blood vasculature | 6.59e-09 | 5 |
vascular cord | 6.59e-09 | 5 |
aorta | 7.42e-07 | 4 |
artery | 7.42e-07 | 4 |
systemic artery | 7.42e-07 | 4 |
arterial blood vessel | 7.42e-07 | 4 |
systemic arterial system | 7.42e-07 | 4 |
aortic system | 7.42e-07 | 4 |
arterial system | 7.42e-07 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.