FFCP PHASE1:Mm9::chr7:25372631..25372684,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=101544|HGNC=|MCL_coexpression_id=398|UniProt=Q3TXZ1,B2RX29|association_with_transcript=0bp_to_ENSMUST00000094705,NM_001033205,uc009fqa.1_5end|description=CAGE_peak_1_at_Zfp575_5end|id=chr7:25372631..25372684,-|ontology_enrichment_celltype=CL:0000117!2.25e-13!23;CL:0000337!2.25e-13!23;CL:0000540!1.53e-10!33;CL:0000047!1.53e-10!33;CL:0000031!1.53e-10!33;CL:0000404!1.53e-10!33;CL:0002319!3.72e-10!43;CL:0000221!4.42e-10!44;CL:0000133!4.42e-10!44;CL:0000393!4.13e-08!39;CL:0000211!4.13e-08!39;CL:0000055!1.52e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.72e-14,23;CL:0000337,3.72e-14,23;CL:0000540,4.98e-11,33;CL:0000047,4.98e-11,33;CL:0000031,4.98e-11,33;CL:0000404,4.98e-11,33;CL:0002319,1.52e-10,43;CL:0000221,1.81e-10,44;CL:0000133,1.81e-10,44;CL:0000393,4.21e-08,39;CL:0000211,4.21e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.58e-22!73;UBERON:0005743!1.58e-22!73;UBERON:0000073!1.23e-21!75;UBERON:0001016!1.23e-21!75;UBERON:0001049!6.45e-21!52;UBERON:0005068!6.45e-21!52;UBERON:0006241!6.45e-21!52;UBERON:0007135!6.45e-21!52;UBERON:0000955!9.98e-19!50;UBERON:0006238!9.98e-19!50;UBERON:0002020!1.27e-18!34;UBERON:0002616!2.99e-18!49;UBERON:0002346!5.18e-18!71;UBERON:0003075!5.18e-18!71;UBERON:0007284!5.18e-18!71;UBERON:0004121!1.08e-17!102;UBERON:0000924!1.08e-17!102;UBERON:0006601!1.08e-17!102;UBERON:0003080!1.53e-17!40;UBERON:0002780!4.36e-17!39;UBERON:0001890!4.36e-17!39;UBERON:0006240!4.36e-17!39;UBERON:0003056!7.47e-17!49;UBERON:0000033!1.81e-16!63;UBERON:0002791!2.81e-15!29;UBERON:0003528!2.81e-15!29;UBERON:0001893!2.81e-15!29;UBERON:0000956!1.93e-10!21;UBERON:0001869!1.93e-10!21;UBERON:0000203!1.93e-10!21;UBERON:0002619!1.46e-08!17;UBERON:0000153!4.64e-08!94;UBERON:0000468!1.10e-07!333;UBERON:0002021!9.63e-07!10;UBERON:0000411!9.63e-07!10;UBERON:0001950!9.63e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.54e-23,73;UBERON:0000073,1.15e-22,54;UBERON:0001016,1.71e-22,75;UBERON:0001049,6.59e-22,52;UBERON:0005068,6.59e-22,52;UBERON:0006241,6.59e-22,52;UBERON:0007135,6.59e-22,52;UBERON:0002346,4.54e-20,64;UBERON:0003075,4.54e-20,64;UBERON:0007284,4.54e-20,64;UBERON:0002020,9.35e-20,34;UBERON:0004121,5.76e-19,95;UBERON:0000924,5.76e-19,95;UBERON:0006601,5.76e-19,95;UBERON:0000955,1.08e-18,47;UBERON:0006238,1.08e-18,47;UBERON:0003080,1.33e-18,40;UBERON:0010371,3.41e-18,73;UBERON:0002616,3.42e-18,46;UBERON:0002780,4.07e-18,39;UBERON:0001890,4.07e-18,39;UBERON:0006240,4.07e-18,39;UBERON:0003056,9.68e-18,49;UBERON:0003528,3.46e-16,29;UBERON:0002791,3.46e-16,29;UBERON:0001893,3.46e-16,29;UBERON:0000956,4.99e-11,21;UBERON:0001869,4.99e-11,21;UBERON:0000203,4.99e-11,21;UBERON:0010314,1.18e-10,92;UBERON:0002619,5.02e-09,17;UBERON:0002021,4.34e-07,10;UBERON:0000411,4.34e-07,10;UBERON:0001950,4.34e-07,10|phase1_expression=4.00372117761985,0,0,0,0,0,0,0,0,0,0,0,0,0.174840804837995,0,0.202475267389826,0,0.157731082679119,0.137114433605739,0,3.31668831589172,0,0,0,0,0,0,0.215471232685889,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,1.1330713617802,1.11514624341466,0.550640256485045,20.342174953049,3.70642765846759,1.97717564461025,1.94429899074283,3.63964696225943,5.75010257459886,0.167782606057736,0,0,0.257259436035947,1.71920063963254,0.515672092277442,18.0061650165042,19.0436752537932,16.4796164911607,6.09920157724438,7.11435836888911,1.7997994345628,0,0,3.29560121570245,2.30530983192933,7.15458324928496,7.42532660824299,7.78202357000113,18.852964970651,12.8103753751936,6.49201235839256,9.4887016308054,12.8690630125403,5.50579404996943,5.74593021383345,5.22262213071228,21.101806036831,23.9697626238313,20.3156214517136,7.81712397203867,11.2552522006336,8.09830713217094,17.6777151284201,15.9456282494995,17.335148461753,0.37863096666592,1.81371744256285,0,0,0,0,0,0,0.842666520790511,0.170430322578058,0,0.35333957451034,2.67602497575693,0,0,0,0,0.253359865475099,0,0.5709193985953,0.517875767294343,0.445326417194474,3.46970653532272,2.74018930480927,2.99800146432876,1.50722640552623,2.93971767839262,0.879666139307728,0.494389935468748,0.578397427679647,0,4.20593809863264,0.441683036920787,0.969750506270444,0,0.585561594023094,1.25668024088073,0.255457055208591,0.958520996047362,0,0.508280908292259,7.18995069143149,8.6925114535539,26.6387226479273,12.5153510538439,14.8314965251592,8.3115217823824,6.00292673350703,10.6931332042832,1.24406970610093,0.252722758433675,0.420883711772948,2.21204753036596,3.90833577536904,3.42118046630164,4.67184935290717,4.62648194229029,3.84341160854549,4.40398105430725,2.84573707812917,3.01795190105979,3.9712276835242,7.74184946321375,7.01426343768239,6.11703948296315,6.96504333044333,8.64284972913362,5.9710280045548,0.702213187313235,0.51469581422943,0,1.44988040774851,1.87620847984877,0.900310307305074,1.42046841351126,1.57411385397923,0.925602677324269,0.697601834251224,1.3413670069981,0.583826711835847,0.493679549740441,2.13417703302824,0.648550476366846,0.438599962275997,0.658650345873152,0.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| ||
|EntrezGene=101544 | |||
|HGNC= | |||
|MCL_coexpression_id=398 | |||
|UniProt=Q3TXZ1,B2RX29 | |||
|association_with_transcript=0bp_to_ENSMUST00000094705,NM_001033205,uc009fqa.1_5end | |||
|description=CAGE_peak_1_at_Zfp575_5end | |||
|id=chr7:25372631..25372684,- | |||
|ontology_enrichment_celltype=CL:0000117!2.25e-13!23;CL:0000337!2.25e-13!23;CL:0000540!1.53e-10!33;CL:0000047!1.53e-10!33;CL:0000031!1.53e-10!33;CL:0000404!1.53e-10!33;CL:0002319!3.72e-10!43;CL:0000221!4.42e-10!44;CL:0000133!4.42e-10!44;CL:0000393!4.13e-08!39;CL:0000211!4.13e-08!39;CL:0000055!1.52e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.72e-14,23;CL:0000337,3.72e-14,23;CL:0000540,4.98e-11,33;CL:0000047,4.98e-11,33;CL:0000031,4.98e-11,33;CL:0000404,4.98e-11,33;CL:0002319,1.52e-10,43;CL:0000221,1.81e-10,44;CL:0000133,1.81e-10,44;CL:0000393,4.21e-08,39;CL:0000211,4.21e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.58e-22!73;UBERON:0005743!1.58e-22!73;UBERON:0000073!1.23e-21!75;UBERON:0001016!1.23e-21!75;UBERON:0001049!6.45e-21!52;UBERON:0005068!6.45e-21!52;UBERON:0006241!6.45e-21!52;UBERON:0007135!6.45e-21!52;UBERON:0000955!9.98e-19!50;UBERON:0006238!9.98e-19!50;UBERON:0002020!1.27e-18!34;UBERON:0002616!2.99e-18!49;UBERON:0002346!5.18e-18!71;UBERON:0003075!5.18e-18!71;UBERON:0007284!5.18e-18!71;UBERON:0004121!1.08e-17!102;UBERON:0000924!1.08e-17!102;UBERON:0006601!1.08e-17!102;UBERON:0003080!1.53e-17!40;UBERON:0002780!4.36e-17!39;UBERON:0001890!4.36e-17!39;UBERON:0006240!4.36e-17!39;UBERON:0003056!7.47e-17!49;UBERON:0000033!1.81e-16!63;UBERON:0002791!2.81e-15!29;UBERON:0003528!2.81e-15!29;UBERON:0001893!2.81e-15!29;UBERON:0000956!1.93e-10!21;UBERON:0001869!1.93e-10!21;UBERON:0000203!1.93e-10!21;UBERON:0002619!1.46e-08!17;UBERON:0000153!4.64e-08!94;UBERON:0000468!1.10e-07!333;UBERON:0002021!9.63e-07!10;UBERON:0000411!9.63e-07!10;UBERON:0001950!9.63e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.54e-23,73;UBERON:0000073,1.15e-22,54;UBERON:0001016,1.71e-22,75;UBERON:0001049,6.59e-22,52;UBERON:0005068,6.59e-22,52;UBERON:0006241,6.59e-22,52;UBERON:0007135,6.59e-22,52;UBERON:0002346,4.54e-20,64;UBERON:0003075,4.54e-20,64;UBERON:0007284,4.54e-20,64;UBERON:0002020,9.35e-20,34;UBERON:0004121,5.76e-19,95;UBERON:0000924,5.76e-19,95;UBERON:0006601,5.76e-19,95;UBERON:0000955,1.08e-18,47;UBERON:0006238,1.08e-18,47;UBERON:0003080,1.33e-18,40;UBERON:0010371,3.41e-18,73;UBERON:0002616,3.42e-18,46;UBERON:0002780,4.07e-18,39;UBERON:0001890,4.07e-18,39;UBERON:0006240,4.07e-18,39;UBERON:0003056,9.68e-18,49;UBERON:0003528,3.46e-16,29;UBERON:0002791,3.46e-16,29;UBERON:0001893,3.46e-16,29;UBERON:0000956,4.99e-11,21;UBERON:0001869,4.99e-11,21;UBERON:0000203,4.99e-11,21;UBERON:0010314,1.18e-10,92;UBERON:0002619,5.02e-09,17;UBERON:0002021,4.34e-07,10;UBERON:0000411,4.34e-07,10;UBERON:0001950,4.34e-07,10 | |||
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| |||
|short_description=p1@Zfp575 | |||
}} |
Revision as of 12:48, 14 September 2013
Short description: | p1@Zfp575 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zfp575_5end |
Coexpression cluster: | MCL_coexpression_mm9:398 |
Association with transcript: | 0bp_to_ENSMUST00000094705, NM_001033205, uc009fqa.1_5end |
EntrezGene: | Zfp575 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.72e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.72e-14 | 23 |
neuron | 4.98e-11 | 33 |
neuronal stem cell | 4.98e-11 | 33 |
neuroblast | 4.98e-11 | 33 |
electrically signaling cell | 4.98e-11 | 33 |
neural cell | 1.52e-10 | 43 |
ectodermal cell | 1.81e-10 | 44 |
neurectodermal cell | 1.81e-10 | 44 |
electrically responsive cell | 4.21e-08 | 39 |
electrically active cell | 4.21e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.54e-23 | 73 |
regional part of nervous system | 1.15e-22 | 54 |
nervous system | 1.71e-22 | 75 |
neural tube | 6.59e-22 | 52 |
neural rod | 6.59e-22 | 52 |
future spinal cord | 6.59e-22 | 52 |
neural keel | 6.59e-22 | 52 |
neurectoderm | 4.54e-20 | 64 |
neural plate | 4.54e-20 | 64 |
presumptive neural plate | 4.54e-20 | 64 |
gray matter | 9.35e-20 | 34 |
ectoderm-derived structure | 5.76e-19 | 95 |
ectoderm | 5.76e-19 | 95 |
presumptive ectoderm | 5.76e-19 | 95 |
brain | 1.08e-18 | 47 |
future brain | 1.08e-18 | 47 |
anterior neural tube | 1.33e-18 | 40 |
ecto-epithelium | 3.41e-18 | 73 |
regional part of brain | 3.42e-18 | 46 |
regional part of forebrain | 4.07e-18 | 39 |
forebrain | 4.07e-18 | 39 |
future forebrain | 4.07e-18 | 39 |
pre-chordal neural plate | 9.68e-18 | 49 |
brain grey matter | 3.46e-16 | 29 |
regional part of telencephalon | 3.46e-16 | 29 |
telencephalon | 3.46e-16 | 29 |
cerebral cortex | 4.99e-11 | 21 |
cerebral hemisphere | 4.99e-11 | 21 |
pallium | 4.99e-11 | 21 |
structure with developmental contribution from neural crest | 1.18e-10 | 92 |
regional part of cerebral cortex | 5.02e-09 | 17 |
occipital lobe | 4.34e-07 | 10 |
visual cortex | 4.34e-07 | 10 |
neocortex | 4.34e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.