FFCP PHASE1:Mm9::chr7:19867962..19868051,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20167|HGNC=|MCL_coexpression_id=13|UniProt=O70622,Q6IM75|association_with_transcript=0bp_to_ENSMUST00000032559,NM_013648,uc009flh.1,uc009fli.1_5end|description=CAGE_peak_2_at_Rtn2_5end|id=chr7:19867962..19868051,+|ontology_enrichment_celltype=CL:0000540!4.01e-17!33;CL:0000047!4.01e-17!33;CL:0000031!4.01e-17!33;CL:0000404!4.01e-17!33;CL:0000221!6.10e-16!44;CL:0000133!6.10e-16!44;CL:0002319!1.26e-15!43;CL:0000117!1.97e-15!23;CL:0000337!1.97e-15!23;CL:0000393!1.34e-12!39;CL:0000211!1.34e-12!39;CL:0000055!3.09e-11!50|ontology_enrichment_celltype_v019_2=CL:0000540,2.26e-19,33;CL:0000047,2.26e-19,33;CL:0000031,2.26e-19,33;CL:0000404,2.26e-19,33;CL:0000221,1.66e-17,44;CL:0000133,1.66e-17,44;CL:0000117,1.96e-17,23;CL:0000337,1.96e-17,23;CL:0002319,3.80e-17,43;CL:0000393,3.54e-15,39;CL:0000211,3.54e-15,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.38e-34!102;UBERON:0000924!1.38e-34!102;UBERON:0006601!1.38e-34!102;UBERON:0000073!1.90e-33!75;UBERON:0001016!1.90e-33!75;UBERON:0001017!3.35e-33!73;UBERON:0005743!3.35e-33!73;UBERON:0002346!4.75e-31!71;UBERON:0003075!4.75e-31!71;UBERON:0007284!4.75e-31!71;UBERON:0000033!3.47e-27!63;UBERON:0001049!5.25e-26!52;UBERON:0005068!5.25e-26!52;UBERON:0006241!5.25e-26!52;UBERON:0007135!5.25e-26!52;UBERON:0000955!3.28e-24!50;UBERON:0006238!3.28e-24!50;UBERON:0003056!6.24e-24!49;UBERON:0002616!1.27e-23!49;UBERON:0003080!9.14e-21!40;UBERON:0002780!3.79e-20!39;UBERON:0001890!3.79e-20!39;UBERON:0006240!3.79e-20!39;UBERON:0002020!2.56e-19!34;UBERON:0002791!4.81e-16!29;UBERON:0003528!4.81e-16!29;UBERON:0001893!4.81e-16!29;UBERON:0000956!5.57e-11!21;UBERON:0001869!5.57e-11!21;UBERON:0000203!5.57e-11!21;UBERON:0007811!2.84e-10!86;UBERON:0000153!7.69e-09!94;UBERON:0002619!1.50e-08!17;UBERON:0000468!1.14e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.84e-37,75;UBERON:0001017,3.54e-37,73;UBERON:0004121,3.22e-35,95;UBERON:0000924,3.22e-35,95;UBERON:0006601,3.22e-35,95;UBERON:0002346,4.89e-34,64;UBERON:0003075,4.89e-34,64;UBERON:0007284,4.89e-34,64;UBERON:0000073,1.32e-30,54;UBERON:0001049,2.58e-29,52;UBERON:0005068,2.58e-29,52;UBERON:0006241,2.58e-29,52;UBERON:0007135,2.58e-29,52;UBERON:0010371,3.60e-29,73;UBERON:0003056,1.65e-26,49;UBERON:0000955,3.36e-25,47;UBERON:0006238,3.36e-25,47;UBERON:0002616,1.53e-24,46;UBERON:0003080,7.11e-23,40;UBERON:0002780,3.59e-22,39;UBERON:0001890,3.59e-22,39;UBERON:0006240,3.59e-22,39;UBERON:0010314,5.03e-22,92;UBERON:0002020,3.41e-21,34;UBERON:0003528,1.82e-17,29;UBERON:0002791,1.82e-17,29;UBERON:0001893,1.82e-17,29;UBERON:0000956,1.03e-11,21;UBERON:0001869,1.03e-11,21;UBERON:0000203,1.03e-11,21;UBERON:0002619,5.78e-09,17;UBERON:0002420,4.38e-07,8;UBERON:0007245,4.38e-07,8;UBERON:0010009,4.38e-07,8;UBERON:0010011,4.38e-07,8;UBERON:0000454,4.38e-07,8;UBERON:0002021,6.84e-07,10;UBERON:0000411,6.84e-07,10;UBERON:0001950,6.84e-07,10;UBERON:0003076,6.93e-07,12;UBERON:0003057,6.93e-07,12|phase1_expression=11.3705681444404,0.348975407639361,0.454999239389536,0.30246421130683,0.500895729946347,1.17515490338323,0.467225281191051,0,0.422366166455,0.468129052643987,0.171217968225505,0.0797721589953364,0.171200729931206,0,0.333109761815663,0.404950534779652,0,0,0,0,9.43980520676875,0,0,0.159992422793407,0,0,0,0.430942465371778,0.380046838912748,0.504060259519861,0.886922042621219,1.27006134691926,0,0,0,0.332469290716985,0.204169356262369,0.418531630736908,0,0,0,0,0,0,0.304130793658544,1.28482726513177,0,5.45062890951116,1.97717564461025,0.972149495371417,0.55994568650145,1.43752564364972,0,0,0,0,0,1.54701627683233,48.1513176845843,34.3844136526821,37.3960528068646,0.677689064138264,0.889294796111139,0.449949858640699,0,0.7104801149461,3.59520132622086,8.83702102239575,43.6533267818691,42.3918646361509,42.6959671543305,45.9898084890124,34.6763609294033,37.7271661582058,41.0218615958052,33.0918763179608,26.4278114398533,33.7094572544896,35.7903222487047,45.6326555546471,44.7374577215783,40.1103295328705,47.1819268312334,35.4540444319958,34.0740092542287,35.3554302568401,39.0098405389542,45.4814647813733,2.87759534666099,4.00529268565963,0.289864488701678,0,0,0,0,0,1.68533304158102,0,0,0.70667914902068,6.33795388995062,0,0,0,0,1.01343946190039,0,1.02765491747154,0.258937883647172,2.22663208597237,5.55153045651635,5.1759131313064,2.7673859670727,4.06951129492081,3.88042733547826,1.63366568728578,1.48316980640624,0.289198713839823,0,0.161766849947409,0.441683036920787,0.484875253135222,1.86391761218122,14.6390398505774,16.9651832518899,0.766371165625774,0.11981512450592,0.599902730993408,0,34.7514283419189,28.8225379775735,60.3140890141749,30.5930803538407,38.1016031422192,34.492815396887,24.9851545124347,0.916554274652847,0.746441823660558,0.252722758433675,4.62972082950243,3.77349284591841,12.1848115349741,10.4436035287103,8.13806016312861,16.1246502988647,12.9394857487698,18.0844328400277,9.31332134660456,1.29340795759705,0.945530400839096,0.879755620819744,0.657587197282725,0.278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| ||
|EntrezGene=20167 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=O70622,Q6IM75 | |||
|association_with_transcript=0bp_to_ENSMUST00000032559,NM_013648,uc009flh.1,uc009fli.1_5end | |||
|description=CAGE_peak_2_at_Rtn2_5end | |||
|id=chr7:19867962..19868051,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.01e-17!33;CL:0000047!4.01e-17!33;CL:0000031!4.01e-17!33;CL:0000404!4.01e-17!33;CL:0000221!6.10e-16!44;CL:0000133!6.10e-16!44;CL:0002319!1.26e-15!43;CL:0000117!1.97e-15!23;CL:0000337!1.97e-15!23;CL:0000393!1.34e-12!39;CL:0000211!1.34e-12!39;CL:0000055!3.09e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.26e-19,33;CL:0000047,2.26e-19,33;CL:0000031,2.26e-19,33;CL:0000404,2.26e-19,33;CL:0000221,1.66e-17,44;CL:0000133,1.66e-17,44;CL:0000117,1.96e-17,23;CL:0000337,1.96e-17,23;CL:0002319,3.80e-17,43;CL:0000393,3.54e-15,39;CL:0000211,3.54e-15,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.38e-34!102;UBERON:0000924!1.38e-34!102;UBERON:0006601!1.38e-34!102;UBERON:0000073!1.90e-33!75;UBERON:0001016!1.90e-33!75;UBERON:0001017!3.35e-33!73;UBERON:0005743!3.35e-33!73;UBERON:0002346!4.75e-31!71;UBERON:0003075!4.75e-31!71;UBERON:0007284!4.75e-31!71;UBERON:0000033!3.47e-27!63;UBERON:0001049!5.25e-26!52;UBERON:0005068!5.25e-26!52;UBERON:0006241!5.25e-26!52;UBERON:0007135!5.25e-26!52;UBERON:0000955!3.28e-24!50;UBERON:0006238!3.28e-24!50;UBERON:0003056!6.24e-24!49;UBERON:0002616!1.27e-23!49;UBERON:0003080!9.14e-21!40;UBERON:0002780!3.79e-20!39;UBERON:0001890!3.79e-20!39;UBERON:0006240!3.79e-20!39;UBERON:0002020!2.56e-19!34;UBERON:0002791!4.81e-16!29;UBERON:0003528!4.81e-16!29;UBERON:0001893!4.81e-16!29;UBERON:0000956!5.57e-11!21;UBERON:0001869!5.57e-11!21;UBERON:0000203!5.57e-11!21;UBERON:0007811!2.84e-10!86;UBERON:0000153!7.69e-09!94;UBERON:0002619!1.50e-08!17;UBERON:0000468!1.14e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.84e-37,75;UBERON:0001017,3.54e-37,73;UBERON:0004121,3.22e-35,95;UBERON:0000924,3.22e-35,95;UBERON:0006601,3.22e-35,95;UBERON:0002346,4.89e-34,64;UBERON:0003075,4.89e-34,64;UBERON:0007284,4.89e-34,64;UBERON:0000073,1.32e-30,54;UBERON:0001049,2.58e-29,52;UBERON:0005068,2.58e-29,52;UBERON:0006241,2.58e-29,52;UBERON:0007135,2.58e-29,52;UBERON:0010371,3.60e-29,73;UBERON:0003056,1.65e-26,49;UBERON:0000955,3.36e-25,47;UBERON:0006238,3.36e-25,47;UBERON:0002616,1.53e-24,46;UBERON:0003080,7.11e-23,40;UBERON:0002780,3.59e-22,39;UBERON:0001890,3.59e-22,39;UBERON:0006240,3.59e-22,39;UBERON:0010314,5.03e-22,92;UBERON:0002020,3.41e-21,34;UBERON:0003528,1.82e-17,29;UBERON:0002791,1.82e-17,29;UBERON:0001893,1.82e-17,29;UBERON:0000956,1.03e-11,21;UBERON:0001869,1.03e-11,21;UBERON:0000203,1.03e-11,21;UBERON:0002619,5.78e-09,17;UBERON:0002420,4.38e-07,8;UBERON:0007245,4.38e-07,8;UBERON:0010009,4.38e-07,8;UBERON:0010011,4.38e-07,8;UBERON:0000454,4.38e-07,8;UBERON:0002021,6.84e-07,10;UBERON:0000411,6.84e-07,10;UBERON:0001950,6.84e-07,10;UBERON:0003076,6.93e-07,12;UBERON:0003057,6.93e-07,12 | |||
|phase1_expression=11.3705681444404,0.348975407639361,0.454999239389536,0.30246421130683,0.500895729946347,1.17515490338323,0.467225281191051,0,0.422366166455,0.468129052643987,0.171217968225505,0.0797721589953364,0.171200729931206,0,0.333109761815663,0.404950534779652,0,0,0,0,9.43980520676875,0,0,0.159992422793407,0,0,0,0.430942465371778,0.380046838912748,0.504060259519861,0.886922042621219,1.27006134691926,0,0,0,0.332469290716985,0.204169356262369,0.418531630736908,0,0,0,0,0,0,0.304130793658544,1.28482726513177,0,5.45062890951116,1.97717564461025,0.972149495371417,0.55994568650145,1.43752564364972,0,0,0,0,0,1.54701627683233,48.1513176845843,34.3844136526821,37.3960528068646,0.677689064138264,0.889294796111139,0.449949858640699,0,0.7104801149461,3.59520132622086,8.83702102239575,43.6533267818691,42.3918646361509,42.6959671543305,45.9898084890124,34.6763609294033,37.7271661582058,41.0218615958052,33.0918763179608,26.4278114398533,33.7094572544896,35.7903222487047,45.6326555546471,44.7374577215783,40.1103295328705,47.1819268312334,35.4540444319958,34.0740092542287,35.3554302568401,39.0098405389542,45.4814647813733,2.87759534666099,4.00529268565963,0.289864488701678,0,0,0,0,0,1.68533304158102,0,0,0.70667914902068,6.33795388995062,0,0,0,0,1.01343946190039,0,1.02765491747154,0.258937883647172,2.22663208597237,5.55153045651635,5.1759131313064,2.7673859670727,4.06951129492081,3.88042733547826,1.63366568728578,1.48316980640624,0.289198713839823,0,0.161766849947409,0.441683036920787,0.484875253135222,1.86391761218122,14.6390398505774,16.9651832518899,0.766371165625774,0.11981512450592,0.599902730993408,0,34.7514283419189,28.8225379775735,60.3140890141749,30.5930803538407,38.1016031422192,34.492815396887,24.9851545124347,0.916554274652847,0.746441823660558,0.252722758433675,4.62972082950243,3.77349284591841,12.1848115349741,10.4436035287103,8.13806016312861,16.1246502988647,12.9394857487698,18.0844328400277,9.31332134660456,1.29340795759705,0.945530400839096,0.879755620819744,0.657587197282725,0.278047249225598,0.696504333044333,0.205782136407943,0.796137067273973,0,0.257347907114715,0,0.621377317606506,0.234526059981096,0.36012412292203,0.23674473558521,0,0.154267112887378,0,0.268273401399619,0.583826711835847,0.329119699826961,0.32833492815819,0.486412857275134,0.584799949701329,0.219550115291051,0.268412837520744,26.2862435705159,46.1012663459194,0.660837565967596,0,1.70630600428187,1.16118335930219,1.54640953586512,1.00841762311671,1.77902435075896,2.47293313946327,0.949058123089023,1.31759163779209,1.75934646160189,1.39269530428806,1.16978452271472,0.898819408654221,0.432276099749388,0.796565093017469,1.13800740571849,2.05647322697512,0,1.22190796707189,0.193952487167626,0.771494018793504,0.505892296994058,0.295220295959204,0.470996183524124,0.370191491765402,0,0.667380422864376,0.589676985339609,0.674586337154561,0.405720242777006,0.482354319504834,0.763877555344259,0,0.162135226775035,0.274561413188081,0,0.372140947668503,0,0,0,0.482443521363367,0.369506380333209,1.13694847062291,0.977789858652155,0.509235257325564,0.469380496577004,1.00503754465089,0,1.17080188714679,0.157635144106191,0.8858587585951,1.2756381492599,0.327726629431476,0.518054945597687,0.289298117163023,1.50791283939272,3.80733978673097,0,0.275936746304732,40.2981980869358,28.5996515284976,0,2.01976741763498,4.73262329124385,3.12350995437311,7.97066571611356,3.34556317133573,4.90157082981267,4.52922449262132,4.45291771842384,10.2289550268959,12.6492088942888,30.2042037436499,0.709700426041343,1.06839362200353,0.488660878060728,0.824850614862677,0,1.21390318077491,1.209294227859,2.07465587731488,0.590603785761546,1.22974059177571,1.03371317267288,1.09060118843252,1.78248689192361,1.26414703174326,1.05418608574999,0,16.000661470428,5.76195500900193,10.2193360188376,11.7885369267376,12.2364761213169,11.9507107793387,10.2020392773315,13.3964577610424,0.469343416127421,2.96564899209348,1.32317038832977,0.49465875882444,1.45317984026315,0.542816324353403,0.835606408021955,0.820704498725306,1.45740418314925,41.1644170463331,0.170870880797853,0.412773735926445,0.370389054739423,0,0,0,0,0.279902904647316,0,0.954670618015114,2.21435195506795,2.23651413839534,1.40406943068342,2.09088296014469,0.655087691238533,1.61837215661785,1.48776220305605,1.30877970992015,0.777689839750757,0.621339313086926,2.25477175473676,0.299033092087958,0.992750942742586,0.194451188344048,0.387479470433193,0.506868376472335,0.821500670520278,1.0416350787516,0.524296722128554,0.724752362478018,1.44015003128933,0,0.405450430580328,0.102710957164827,0.25984164595559,0,0,0,0,0,0,0,0.0974578807397524,0.0962118416403295,0,0.453460767230423,1.55390167361845,0.717710852875806,1.51096154727671,0.386379188064381,0.750729901804728,1.28206136987086,1.2862102744744,0.501572104035363,24.2843292325339,29.0004898999521,29.7905666988486,37.6358469332676,26.0331357512844,26.4387864086395,31.0510350106631,25.6683085837806,24.9228324941313,27.9590568345983,6.2272408550506,10.7736715818278,8.53668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| |||
|short_description=p2@Rtn2 | |||
}} |
Revision as of 12:40, 14 September 2013
Short description: | p2@Rtn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rtn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000032559, NM_013648, uc009flh.1, uc009fli.1_5end |
EntrezGene: | Rtn2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.26e-19 | 33 |
neuronal stem cell | 2.26e-19 | 33 |
neuroblast | 2.26e-19 | 33 |
electrically signaling cell | 2.26e-19 | 33 |
ectodermal cell | 1.66e-17 | 44 |
neurectodermal cell | 1.66e-17 | 44 |
CNS neuron (sensu Vertebrata) | 1.96e-17 | 23 |
neuroblast (sensu Vertebrata) | 1.96e-17 | 23 |
neural cell | 3.80e-17 | 43 |
electrically responsive cell | 3.54e-15 | 39 |
electrically active cell | 3.54e-15 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.