FFCP PHASE1:Hg19::chrX:80065146..80065250,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=254065|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17342|TSSclassifier=S|UniProt=Q6RI45|association_with_transcript=0bp_to_ENST00000373275,ENST00000478415,NM_153252,uc004edt.2,uc004edu.2,uc004edv.2,uc004edw.2,uc004edx.2,uc004edy.2,uc004edz.2,uc004eea.2,uc004eeb.2_5end|coexpression_cluster_id=C468|description=CAGE_peak_1_at_BRWD3_5end|id=chrX:80065146..80065250,-|ontology_enrichment_celltype=CL:0000738!4.44e-11!140;CL:0000037!8.66e-10!172;CL:0000566!8.66e-10!172;CL:0000791!8.88e-10!18;CL:0000789!8.88e-10!18;CL:0002420!8.88e-10!18;CL:0002419!8.88e-10!18;CL:0000790!8.88e-10!18;CL:0002032!2.28e-09!165;CL:0000837!2.28e-09!165;CL:0002031!4.24e-09!124;CL:0000988!1.44e-08!182;CL:0002087!2.51e-08!119;CL:0000084!4.93e-08!25;CL:0000827!4.93e-08!25;CL:0000625!5.14e-08!11;CL:0000838!1.03e-07!52;CL:0000542!2.76e-07!53;CL:0000051!2.76e-07!53|ontology_enrichment_celltype_v019=CL:0000791;4.75e-10;18!CL:0000789;4.75e-10;18!CL:0002419;4.75e-10;18!CL:0000625;3.56e-08;11!CL:0000084;5.27e-08;25|ontology_enrichment_celltype_v019_2=CL:0000738,7.41e-11,136;CL:0000791,6.96e-10,18;CL:0000789,6.96e-10,18;CL:0002420,6.96e-10,18;CL:0002419,6.96e-10,18;CL:0000790,6.96e-10,18;CL:0000037,1.24e-09,168;CL:0002032,3.18e-09,161;CL:0000837,3.18e-09,161;CL:0002031,6.40e-09,120;CL:0000988,8.51e-09,177;CL:0000084,4.07e-08,25;CL:0000827,4.07e-08,25;CL:0002087,4.09e-08,115;CL:0000625,4.24e-08,11;CL:0000838,2.48e-07,52;CL:0000542,8.15e-07,53;CL:0000051,8.15e-07,53|ontology_enrichment_development_v019=CL:0000790;4.75e-10;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.39e-14!115;UBERON:0002390!4.61e-07!102;UBERON:0003061!4.61e-07!102|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.95e-14,114;UBERON:0002390,4.00e-07,98;UBERON:0003061,4.00e-07,98|phase1_expression=2.54349730978779,1.71280419112787,2.53717927372748,0,0.446961094427288,0,2.53299878168311,1.89515962028049,0.783556884599516,0.245733936501509,0.697801167972428,0.436882744260345,0.263766978228454,1.60896258848061,1.32558950291166,0.672325146451775,0,0.730310090387373,1.95173119516203,0.369363174230364,1.22400414746552,0.313454721478088,2.0036519099174,1.50561867580173,2.51085279189606,1.91033514369878,0.985207073399349,1.49550484495991,5.11373559903575,12.666370137208,3.71558695958582,2.75826367343678,1.204823675113,0.739508020333575,3.09868802321207,4.40724620711007,2.05520307534393,3.32397245119126,7.2196001089251,7.81239134577067,3.13481663935894,3.88672399222775,5.92423805558629,3.19876125315042,1.88937971844405,3.88134497900506,4.88100977501938,1.6446715520873,3.71647645074124,2.3015391385772,1.7931249457037,1.6553756092201,6.89491361473237,3.22742341791913,1.35426486594342,4.89430082810772,1.63743690034707,2.24723484445085,3.67300670845083,2.88836124368484,3.19668562899521,2.63881040149373,1.79517291859469,1.70489900213078,2.61188314765726,1.13477044938228,0.622822248995575,5.02497330513487,2.60741459210101,2.6062661364614,3.02699751316684,4.41933163185078,3.48108626184973,1.26753171787165,2.33864729961548,3.14487968262564,3.59451619668784,4.05477610672067,4.018139667427,1.71007646244749,2.18808344918999,3.47061892152804,1.75996244461323,2.18455444504853,2.66852776159066,6.82768356106412,2.40237592221607,4.02326707968138,3.96626923670917,2.86216126360609,2.27685187643779,4.69789751496751,3.05818582500183,1.32171328579026,2.80254281490768,0.790152254325231,13.9663936780821,11.0043013569766,6.16804496998528,5.3499678525017,2.93330039970231,5.6813736688168,1.94826728407911,5.79334375802903,5.00830042707223,5.53834736459053,9.74893909554056,4.48319619039863,3.64166173167659,5.26201294731764,3.86890024900188,4.34704628602579,5.04174314751005,6.42097987415311,3.1360657141493,6.68525121915641,8.04763036564035,6.52892146416997,9.61474829674111,7.00843911513013,11.7195021694155,12.3558765778289,6.47473012034423,7.16725022464743,4.99722906209383,6.86654030927649,8.21127996921047,9.87873041801189,11.7673686144743,9.70323506014753,4.87613732627923,1.34140171940727,1.79007586580942,0.722878304769133,1.00267582127178,1.73815822752988,3.1811437882044,3.40644409211845,2.74150969775797,1.77383517970051,3.24988707064566,3.92937226493138,2.18577172975525,0.370784442784429,0.324547393654683,1.74129737299267,1.72845348674525,0.953962497221368,0.571994910780128,1.11437250398869,0.39752481473341,0,1.38856200643038,2.82653970962005,0,2.20094433552054,0.835979866147242,0.516833518338658,1.06729878806013,1.33888245105868,0.805658634218294,0,0.488124115096339,0.735326160691737,1.62028389576352,1.7859945656816,1.34717623575702,0.788280363383256,0,0,0.183201743930407,31.6273001846552,19.3890132074163,0,1.49091585508596,2.40597972162702,4.76673050927588,5.73673241497627,2.12801029319014,1.12135520028461,2.1349799145941,2.4666754841716,3.11211035399766,2.55950276932407,3.26923806226917,1.96764655938411,3.45705554687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5.08064460229115,5.26945797651315,0.62041277132864,0.955538938977433,1.67783147696688,0.588901401691458,1.5849330247695,1.29485767437579,1.7452677165562,3.4794432940146,3.88568794447312,0.935757853848423,1.19370465096821,0.475680363110274,0,0.549702583727146,0.754814217833368,4.09023037972107,1.96703604453562,1.88126918544609,3.18692818280077,0.471353094203252,2.55201007249429,4.1586496045792,4.6492130034174,1.35941691750254,4.79317981697253,5.0921731499126,2.09876427442351,6.07083391259236,2.11736923029415,1.60482733378337,2.92134555298607,2.2936464170227,3.72682916193773,1.73548718412503,1.49581278420012,5.23620828408453,3.7031878836078,2.23197010900051,1.84870251452567,1.29787968637137,0.630832124175395,3.49649830283826,1.26698501011437,3.26364255174342,2.6721740526556,4.22716537860287,2.005660314339,6.06229585745915,6.16317499359211,3.31667775783512,5.06821679723287,2.34557380091079,3.09483760902862,4.32745695901241,7.01444271543194,1.00918676322552,4.20071244635888,4.24446096812261,3.04803447055746,1.36893320434112,4.3105313929336,3.29922144806311,6.98586748746628,2.11648498388534,0.640364075266293,5.7921684686082,1.16772762738563,0,5.01189921149752,4.47585796147312,6.65756774185513,3.8242020782295,0.961705476909699|short_description=p1@BRWD3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=254065 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17342 | |||
|TSSclassifier=S | |||
|UniProt=Q6RI45 | |||
|association_with_transcript=0bp_to_ENST00000373275,ENST00000478415,NM_153252,uc004edt.2,uc004edu.2,uc004edv.2,uc004edw.2,uc004edx.2,uc004edy.2,uc004edz.2,uc004eea.2,uc004eeb.2_5end | |||
|coexpression_cluster_id=C468 | |||
|description=CAGE_peak_1_at_BRWD3_5end | |||
|id=chrX:80065146..80065250,- | |||
|ontology_enrichment_celltype=CL:0000738!4.44e-11!140;CL:0000037!8.66e-10!172;CL:0000566!8.66e-10!172;CL:0000791!8.88e-10!18;CL:0000789!8.88e-10!18;CL:0002420!8.88e-10!18;CL:0002419!8.88e-10!18;CL:0000790!8.88e-10!18;CL:0002032!2.28e-09!165;CL:0000837!2.28e-09!165;CL:0002031!4.24e-09!124;CL:0000988!1.44e-08!182;CL:0002087!2.51e-08!119;CL:0000084!4.93e-08!25;CL:0000827!4.93e-08!25;CL:0000625!5.14e-08!11;CL:0000838!1.03e-07!52;CL:0000542!2.76e-07!53;CL:0000051!2.76e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.75e-10;18!CL:0000789;4.75e-10;18!CL:0002419;4.75e-10;18!CL:0000625;3.56e-08;11!CL:0000084;5.27e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.41e-11,136;CL:0000791,6.96e-10,18;CL:0000789,6.96e-10,18;CL:0002420,6.96e-10,18;CL:0002419,6.96e-10,18;CL:0000790,6.96e-10,18;CL:0000037,1.24e-09,168;CL:0002032,3.18e-09,161;CL:0000837,3.18e-09,161;CL:0002031,6.40e-09,120;CL:0000988,8.51e-09,177;CL:0000084,4.07e-08,25;CL:0000827,4.07e-08,25;CL:0002087,4.09e-08,115;CL:0000625,4.24e-08,11;CL:0000838,2.48e-07,52;CL:0000542,8.15e-07,53;CL:0000051,8.15e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;4.75e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.39e-14!115;UBERON:0002390!4.61e-07!102;UBERON:0003061!4.61e-07!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.95e-14,114;UBERON:0002390,4.00e-07,98;UBERON:0003061,4.00e-07,98 | |||
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| |||
|short_description=p1@BRWD3 | |||
}} |
Revision as of 12:36, 14 September 2013
Short description: | p1@BRWD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BRWD3_5end |
Coexpression cluster: | C468_Neutrophils_Eosinophils_cerebellum_occipital_Whole_temporal_parietal |
Association with transcript: | 0bp_to_ENST00000373275, ENST00000478415, NM_153252, uc004edt.2, uc004edu.2, uc004edv.2, uc004edw.2, uc004edx.2, uc004edy.2, uc004edz.2, uc004eea.2, uc004eeb.2_5end |
EntrezGene: | BRWD3 |
HGNC: | 17342 |
UniProt: | Q6RI45 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.41e-11 | 136 |
mature alpha-beta T cell | 6.96e-10 | 18 |
alpha-beta T cell | 6.96e-10 | 18 |
immature T cell | 6.96e-10 | 18 |
mature T cell | 6.96e-10 | 18 |
immature alpha-beta T cell | 6.96e-10 | 18 |
hematopoietic stem cell | 1.24e-09 | 168 |
hematopoietic oligopotent progenitor cell | 3.18e-09 | 161 |
hematopoietic multipotent progenitor cell | 3.18e-09 | 161 |
hematopoietic lineage restricted progenitor cell | 6.40e-09 | 120 |
hematopoietic cell | 8.51e-09 | 177 |
T cell | 4.07e-08 | 25 |
pro-T cell | 4.07e-08 | 25 |
nongranular leukocyte | 4.09e-08 | 115 |
CD8-positive, alpha-beta T cell | 4.24e-08 | 11 |
lymphoid lineage restricted progenitor cell | 2.48e-07 | 52 |
lymphocyte | 8.15e-07 | 53 |
common lymphoid progenitor | 8.15e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.95e-14 | 114 |
hematopoietic system | 4.00e-07 | 98 |
blood island | 4.00e-07 | 98 |
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