FFCP PHASE1:Mm9::chr7:147323458..147323492,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=212508|HGNC=|MCL_coexpression_id=64|UniProt=Q8R2R6|association_with_transcript=0bp_to_ENSMUST00000036977,NM_199301,uc009khd.2_5end|description=CAGE_peak_2_at_Mtg1_5end|id=chr7:147323458..147323492,+|ontology_enrichment_celltype=CL:0000117!1.51e-08!23;CL:0000337!1.51e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.05e-08,23;CL:0000337,1.05e-08,23;CL:0000221,9.09e-07,44;CL:0000133,9.09e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!2.96e-14!34;UBERON:0002791!8.51e-13!29;UBERON:0003528!8.51e-13!29;UBERON:0001893!8.51e-13!29;UBERON:0003056!2.42e-11!49;UBERON:0000956!2.32e-10!21;UBERON:0001869!2.32e-10!21;UBERON:0000203!2.32e-10!21;UBERON:0002346!2.62e-10!71;UBERON:0003075!2.62e-10!71;UBERON:0007284!2.62e-10!71;UBERON:0001017!2.94e-10!73;UBERON:0005743!2.94e-10!73;UBERON:0000073!3.37e-10!75;UBERON:0001016!3.37e-10!75;UBERON:0001049!7.59e-10!52;UBERON:0005068!7.59e-10!52;UBERON:0006241!7.59e-10!52;UBERON:0007135!7.59e-10!52;UBERON:0002780!7.80e-10!39;UBERON:0001890!7.80e-10!39;UBERON:0006240!7.80e-10!39;UBERON:0003080!2.83e-09!40;UBERON:0000033!3.57e-09!63;UBERON:0004121!1.00e-08!102;UBERON:0000924!1.00e-08!102;UBERON:0006601!1.00e-08!102;UBERON:0002619!4.84e-08!17;UBERON:0000955!5.07e-08!50;UBERON:0006238!5.07e-08!50;UBERON:0002616!7.41e-08!49;UBERON:0007811!5.93e-07!86;UBERON:0000479!8.25e-07!349|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.29e-14,92;UBERON:0002020,2.57e-14,34;UBERON:0003528,7.53e-13,29;UBERON:0002791,7.53e-13,29;UBERON:0001893,7.53e-13,29;UBERON:0003056,2.12e-11,49;UBERON:0002346,9.68e-11,64;UBERON:0003075,9.68e-11,64;UBERON:0007284,9.68e-11,64;UBERON:0000956,2.11e-10,21;UBERON:0001869,2.11e-10,21;UBERON:0000203,2.11e-10,21;UBERON:0001017,2.18e-10,73;UBERON:0001016,2.51e-10,75;UBERON:0001049,5.45e-10,52;UBERON:0005068,5.45e-10,52;UBERON:0006241,5.45e-10,52;UBERON:0007135,5.45e-10,52;UBERON:0002780,6.93e-10,39;UBERON:0001890,6.93e-10,39;UBERON:0006240,6.93e-10,39;UBERON:0000073,1.79e-09,54;UBERON:0003080,2.53e-09,40;UBERON:0004121,9.17e-09,95;UBERON:0000924,9.17e-09,95;UBERON:0006601,9.17e-09,95;UBERON:0000955,9.86e-09,47;UBERON:0006238,9.86e-09,47;UBERON:0002616,1.45e-08,46;UBERON:0010371,2.31e-08,73;UBERON:0002619,4.51e-08,17;UBERON:0000479,8.82e-07,349|phase1_expression=2.5623815536767,1.39590163055744,0,2.11724947914781,1.00179145989269,1.34303417529512,1.86890112476421,1.03298658753261,0.140788722151667,0.468129052643987,2.56826952338257,1.83475965689274,1.71200729931206,1.39872643870396,1.66554880907831,1.41732687172878,2.09868563438444,1.26184866143295,1.50825876966313,1.27316895539409,0.765389611359628,2.08510997521859,3.6567970479451,2.07990149631429,3.21172993494038,0.57423196411502,1.29228598847722,0.430942465371778,1.33016393619462,1.51218077855958,1.77384408524244,10.1604907753541,10.4561013889377,31.6963362030877,2.88851619751275,2.32728503501889,2.04169356262369,0.837063261473815,2.3440060335714,0,0,0,0,0.629484089877886,1.31790010585369,0.917733760808408,0,4.79655344036982,2.41654801007919,2.52758868796568,3.77963338388479,10.062679505548,0.671130424230945,1.45072428402269,2.35265659399725,1.02903774414379,0.573066879877513,2.57836046138721,8.49729135610311,5.81890077199236,11.4089652631112,3.38844532069132,2.66788438833342,0.899899717281399,3.9554654502679,0.7104801149461,2.09720077362883,2.30530983192933,8.19147937236973,9.58542162155004,10.3059231062177,5.42736870367227,2.20868540951614,9.30930074033651,9.20116521775069,11.9498442259303,0,2.80912143787413,2.4577045320999,8.83638127792299,8.32537556781928,8.33461392890816,2.79182999001381,3.37657566019008,1.98637722109853,3.83017161115768,3.27454865837937,6.15118171223492,2.95332153999418,1.73814588245607,0.289864488701678,0.860423876981386,2.719885334831,2.15881276655127,1.94932925234301,0.896053774194671,2.66844398250329,0.511290967734173,0.779358013808606,0.35333957451034,2.95771181531029,1.28326477414318,0,0,4.5463118612355,3.54703811665138,2.52762222507392,0.79928715803342,1.03575153458869,1.48442139064825,2.4287945747259,2.43572382649713,2.53677046981664,3.3158980921577,2.23418543557839,1.50799909595611,0.988779870937496,1.87979163995885,1.76922110389975,1.29413479957927,2.20841518460394,1.45462575940567,0,3.51336956413857,1.8850203613211,0.510914110417183,1.91704199209472,2.39961092397363,1.77898317902291,1.3481157546434,3.66000482254901,4.27224797183739,4.51943232499919,4.34716277461562,0.83115217823824,2.43361894601636,2.85150218780886,1.7416975885413,0.758168275301024,1.89397670297827,2.86264974517948,3.21862946206862,3.06105620669094,3.91832526372859,3.94611695077702,5.38077625196369,4.77878795254617,2.58703370739016,2.80238390812695,2.64748512234947,2.99116911078713,4.16471891612392,1.66828349535359,1.39300866608867,0.61734640922383,2.9855140022774,2.80885274925294,2.31613116403244,1.42081749697796,1.86413195281952,3.04883877975425,5.58192390529146,3.07768156260773,5.90292695242211,8.33042409591843,6.27841650826101,4.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| ||
|EntrezGene=212508 | |||
|HGNC= | |||
|MCL_coexpression_id=64 | |||
|UniProt=Q8R2R6 | |||
|association_with_transcript=0bp_to_ENSMUST00000036977,NM_199301,uc009khd.2_5end | |||
|description=CAGE_peak_2_at_Mtg1_5end | |||
|id=chr7:147323458..147323492,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.51e-08!23;CL:0000337!1.51e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.05e-08,23;CL:0000337,1.05e-08,23;CL:0000221,9.09e-07,44;CL:0000133,9.09e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!2.96e-14!34;UBERON:0002791!8.51e-13!29;UBERON:0003528!8.51e-13!29;UBERON:0001893!8.51e-13!29;UBERON:0003056!2.42e-11!49;UBERON:0000956!2.32e-10!21;UBERON:0001869!2.32e-10!21;UBERON:0000203!2.32e-10!21;UBERON:0002346!2.62e-10!71;UBERON:0003075!2.62e-10!71;UBERON:0007284!2.62e-10!71;UBERON:0001017!2.94e-10!73;UBERON:0005743!2.94e-10!73;UBERON:0000073!3.37e-10!75;UBERON:0001016!3.37e-10!75;UBERON:0001049!7.59e-10!52;UBERON:0005068!7.59e-10!52;UBERON:0006241!7.59e-10!52;UBERON:0007135!7.59e-10!52;UBERON:0002780!7.80e-10!39;UBERON:0001890!7.80e-10!39;UBERON:0006240!7.80e-10!39;UBERON:0003080!2.83e-09!40;UBERON:0000033!3.57e-09!63;UBERON:0004121!1.00e-08!102;UBERON:0000924!1.00e-08!102;UBERON:0006601!1.00e-08!102;UBERON:0002619!4.84e-08!17;UBERON:0000955!5.07e-08!50;UBERON:0006238!5.07e-08!50;UBERON:0002616!7.41e-08!49;UBERON:0007811!5.93e-07!86;UBERON:0000479!8.25e-07!349 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.29e-14,92;UBERON:0002020,2.57e-14,34;UBERON:0003528,7.53e-13,29;UBERON:0002791,7.53e-13,29;UBERON:0001893,7.53e-13,29;UBERON:0003056,2.12e-11,49;UBERON:0002346,9.68e-11,64;UBERON:0003075,9.68e-11,64;UBERON:0007284,9.68e-11,64;UBERON:0000956,2.11e-10,21;UBERON:0001869,2.11e-10,21;UBERON:0000203,2.11e-10,21;UBERON:0001017,2.18e-10,73;UBERON:0001016,2.51e-10,75;UBERON:0001049,5.45e-10,52;UBERON:0005068,5.45e-10,52;UBERON:0006241,5.45e-10,52;UBERON:0007135,5.45e-10,52;UBERON:0002780,6.93e-10,39;UBERON:0001890,6.93e-10,39;UBERON:0006240,6.93e-10,39;UBERON:0000073,1.79e-09,54;UBERON:0003080,2.53e-09,40;UBERON:0004121,9.17e-09,95;UBERON:0000924,9.17e-09,95;UBERON:0006601,9.17e-09,95;UBERON:0000955,9.86e-09,47;UBERON:0006238,9.86e-09,47;UBERON:0002616,1.45e-08,46;UBERON:0010371,2.31e-08,73;UBERON:0002619,4.51e-08,17;UBERON:0000479,8.82e-07,349 | |||
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| |||
|short_description=p2@Mtg1 | |||
}} |
Revision as of 12:13, 14 September 2013
Short description: | p2@Mtg1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Mtg1_5end |
Coexpression cluster: | MCL_coexpression_mm9:64 |
Association with transcript: | 0bp_to_ENSMUST00000036977, NM_199301, uc009khd.2_5end |
EntrezGene: | Mtg1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.05e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.05e-08 | 23 |
ectodermal cell | 9.09e-07 | 44 |
neurectodermal cell | 9.09e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.29e-14 | 92 |
gray matter | 2.57e-14 | 34 |
brain grey matter | 7.53e-13 | 29 |
regional part of telencephalon | 7.53e-13 | 29 |
telencephalon | 7.53e-13 | 29 |
pre-chordal neural plate | 2.12e-11 | 49 |
neurectoderm | 9.68e-11 | 64 |
neural plate | 9.68e-11 | 64 |
presumptive neural plate | 9.68e-11 | 64 |
cerebral cortex | 2.11e-10 | 21 |
cerebral hemisphere | 2.11e-10 | 21 |
pallium | 2.11e-10 | 21 |
central nervous system | 2.18e-10 | 73 |
nervous system | 2.51e-10 | 75 |
neural tube | 5.45e-10 | 52 |
neural rod | 5.45e-10 | 52 |
future spinal cord | 5.45e-10 | 52 |
neural keel | 5.45e-10 | 52 |
regional part of forebrain | 6.93e-10 | 39 |
forebrain | 6.93e-10 | 39 |
future forebrain | 6.93e-10 | 39 |
regional part of nervous system | 1.79e-09 | 54 |
anterior neural tube | 2.53e-09 | 40 |
ectoderm-derived structure | 9.17e-09 | 95 |
ectoderm | 9.17e-09 | 95 |
presumptive ectoderm | 9.17e-09 | 95 |
brain | 9.86e-09 | 47 |
future brain | 9.86e-09 | 47 |
regional part of brain | 1.45e-08 | 46 |
ecto-epithelium | 2.31e-08 | 73 |
regional part of cerebral cortex | 4.51e-08 | 17 |
tissue | 8.82e-07 | 349 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.