FFCP PHASE1:Mm9::chr7:125849222..125849300,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56209|HGNC=|MCL_coexpression_id=240|UniProt=Q9JL56|association_with_transcript=0bp_to_ENSMUST00000038791,NM_019580,uc009jki.1_5end|description=CAGE_peak_1_at_Gde1_5end|id=chr7:125849222..125849300,-|ontology_enrichment_celltype=CL:0000221!9.94e-09!44;CL:0000133!9.94e-09!44;CL:0002319!1.04e-08!43;CL:0000055!7.78e-08!50;CL:0002321!3.36e-07!70;CL:0000220!3.36e-07!70;CL:0000117!5.90e-07!23;CL:0000337!5.90e-07!23|ontology_enrichment_celltype_v019_2=CL:0000221,9.94e-09,44;CL:0000133,9.94e-09,44;CL:0002319,1.04e-08,43;CL:0002321,3.36e-07,70;CL:0000117,5.90e-07,23;CL:0000337,5.90e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.31e-19!75;UBERON:0001016!2.31e-19!75;UBERON:0001017!6.17e-19!73;UBERON:0005743!6.17e-19!73;UBERON:0001049!3.95e-16!52;UBERON:0005068!3.95e-16!52;UBERON:0006241!3.95e-16!52;UBERON:0007135!3.95e-16!52;UBERON:0004121!6.97e-16!102;UBERON:0000924!6.97e-16!102;UBERON:0006601!6.97e-16!102;UBERON:0000955!1.66e-15!50;UBERON:0006238!1.66e-15!50;UBERON:0002616!4.81e-15!49;UBERON:0002020!2.19e-13!34;UBERON:0002346!5.33e-13!71;UBERON:0003075!5.33e-13!71;UBERON:0007284!5.33e-13!71;UBERON:0000033!2.73e-12!63;UBERON:0002791!3.45e-11!29;UBERON:0003528!3.45e-11!29;UBERON:0001893!3.45e-11!29;UBERON:0003080!6.67e-11!40;UBERON:0002780!1.80e-10!39;UBERON:0001890!1.80e-10!39;UBERON:0006240!1.80e-10!39;UBERON:0000956!8.22e-09!21;UBERON:0001869!8.22e-09!21;UBERON:0000203!8.22e-09!21;UBERON:0002619!1.37e-08!17;UBERON:0004111!3.00e-08!122;UBERON:0002021!5.58e-08!10;UBERON:0000411!5.58e-08!10;UBERON:0001950!5.58e-08!10;UBERON:0003056!1.40e-07!49;UBERON:0000025!1.45e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.31e-19,75;UBERON:0001017,6.17e-19,73;UBERON:0000073,2.37e-17,54;UBERON:0001049,3.95e-16,52;UBERON:0005068,3.95e-16,52;UBERON:0006241,3.95e-16,52;UBERON:0007135,3.95e-16,52;UBERON:0004121,5.61e-15,95;UBERON:0000924,5.61e-15,95;UBERON:0006601,5.61e-15,95;UBERON:0000955,6.60e-14,47;UBERON:0006238,6.60e-14,47;UBERON:0002616,1.86e-13,46;UBERON:0002020,2.19e-13,34;UBERON:0002346,2.66e-12,64;UBERON:0003075,2.66e-12,64;UBERON:0007284,2.66e-12,64;UBERON:0003528,3.45e-11,29;UBERON:0002791,3.45e-11,29;UBERON:0001893,3.45e-11,29;UBERON:0003080,6.67e-11,40;UBERON:0010371,1.44e-10,73;UBERON:0002780,1.80e-10,39;UBERON:0001890,1.80e-10,39;UBERON:0006240,1.80e-10,39;UBERON:0011216,3.74e-09,194;UBERON:0000956,8.22e-09,21;UBERON:0001869,8.22e-09,21;UBERON:0000203,8.22e-09,21;UBERON:0002619,1.37e-08,17;UBERON:0004111,3.00e-08,122;UBERON:0002021,5.58e-08,10;UBERON:0000411,5.58e-08,10;UBERON:0001950,5.58e-08,10;UBERON:0003056,1.40e-07,49;UBERON:0000025,1.45e-07,114;UBERON:0010314,3.44e-07,92|phase1_expression=72.0669811971573,115.859835336268,164.709724659012,386.246797838822,404.222854066702,68.8305014838748,71.4854680222309,35.1215439761087,68.9864738543167,73.028132212462,37.3255170731601,40.2051681336496,24.8241058400248,26.7506431402132,47.3015861778241,43.3297072214228,74.1535590815835,25.5524353940173,28.1084588891765,44.1365237869951,104.688290175967,26.6099749218373,33.6947727989227,71.3566205658594,85.7990711191216,124.034104248844,150.335936659517,95.238284847163,56.0569087396303,62.2514420507029,44.7895631523715,59.0578526317457,54.7407660950267,15.8481681015439,2.88851619751275,8.31173226792462,2.6542016314108,170.760905340658,136.733685291665,90.5696077074671,111.175751237862,116.117732442936,108.754319078978,60.9340599001794,57.2779661390257,55.2475724006661,104.840440142637,180.52482948301,168.059929791871,173.431469974261,103.309979159518,162.440397732418,29.5297386661616,34.8173828165445,34.2815675125313,42.9623258180031,53.00868638867,63.4276673501254,85.9844958653291,112.146087605671,108.385169999557,72.1738853307251,96.9331327761142,77.3913756862003,103.830968069532,103.730096782131,143.208852827797,196.335554019314,62.732215446629,75.06330171242,77.3995857773086,227.663834569831,205.407743085001,66.2675223752901,56.8363643138142,102.952504100322,205.916697468857,181.188332742881,177.87636551073,93.3754917129772,91.7621065332169,82.8252259185248,226.41741219012,178.395747380043,164.410914607848,151.439092933465,135.253096759148,103.638091878867,103.744884866462,83.3554307977844,48.1175051244785,77.4381489283248,169.31286209323,85.2731042787751,119.558860810371,188.619319467978,76.401764551673,35.1086464510799,35.0711106213873,41.3407302177098,72.1118309256604,20.5322363862909,17.8363667794652,21.3320010945999,105.864119054484,90.1961121091351,91.4999245476758,111.900202124679,19.4203412735379,88.3230727435707,55.8622752186957,82.2056791442781,86.2501959737659,91.1871975343366,63.1451357318735,104.303270803631,108.271395867656,114.37809132365,48.6535803572431,39.147577687273,40.413997878252,48.9724005666574,102.515468669967,123.553496338873,149.12605525118,95.5409386480132,24.8017307727255,38.3937747835781,33.9277506285083,157.280171375064,179.79773690772,85.9475768451993,213.630089516308,253.158302757027,200.515462999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| ||
|EntrezGene=56209 | |||
|HGNC= | |||
|MCL_coexpression_id=240 | |||
|UniProt=Q9JL56 | |||
|association_with_transcript=0bp_to_ENSMUST00000038791,NM_019580,uc009jki.1_5end | |||
|description=CAGE_peak_1_at_Gde1_5end | |||
|id=chr7:125849222..125849300,- | |||
|ontology_enrichment_celltype=CL:0000221!9.94e-09!44;CL:0000133!9.94e-09!44;CL:0002319!1.04e-08!43;CL:0000055!7.78e-08!50;CL:0002321!3.36e-07!70;CL:0000220!3.36e-07!70;CL:0000117!5.90e-07!23;CL:0000337!5.90e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,9.94e-09,44;CL:0000133,9.94e-09,44;CL:0002319,1.04e-08,43;CL:0002321,3.36e-07,70;CL:0000117,5.90e-07,23;CL:0000337,5.90e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.31e-19!75;UBERON:0001016!2.31e-19!75;UBERON:0001017!6.17e-19!73;UBERON:0005743!6.17e-19!73;UBERON:0001049!3.95e-16!52;UBERON:0005068!3.95e-16!52;UBERON:0006241!3.95e-16!52;UBERON:0007135!3.95e-16!52;UBERON:0004121!6.97e-16!102;UBERON:0000924!6.97e-16!102;UBERON:0006601!6.97e-16!102;UBERON:0000955!1.66e-15!50;UBERON:0006238!1.66e-15!50;UBERON:0002616!4.81e-15!49;UBERON:0002020!2.19e-13!34;UBERON:0002346!5.33e-13!71;UBERON:0003075!5.33e-13!71;UBERON:0007284!5.33e-13!71;UBERON:0000033!2.73e-12!63;UBERON:0002791!3.45e-11!29;UBERON:0003528!3.45e-11!29;UBERON:0001893!3.45e-11!29;UBERON:0003080!6.67e-11!40;UBERON:0002780!1.80e-10!39;UBERON:0001890!1.80e-10!39;UBERON:0006240!1.80e-10!39;UBERON:0000956!8.22e-09!21;UBERON:0001869!8.22e-09!21;UBERON:0000203!8.22e-09!21;UBERON:0002619!1.37e-08!17;UBERON:0004111!3.00e-08!122;UBERON:0002021!5.58e-08!10;UBERON:0000411!5.58e-08!10;UBERON:0001950!5.58e-08!10;UBERON:0003056!1.40e-07!49;UBERON:0000025!1.45e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.31e-19,75;UBERON:0001017,6.17e-19,73;UBERON:0000073,2.37e-17,54;UBERON:0001049,3.95e-16,52;UBERON:0005068,3.95e-16,52;UBERON:0006241,3.95e-16,52;UBERON:0007135,3.95e-16,52;UBERON:0004121,5.61e-15,95;UBERON:0000924,5.61e-15,95;UBERON:0006601,5.61e-15,95;UBERON:0000955,6.60e-14,47;UBERON:0006238,6.60e-14,47;UBERON:0002616,1.86e-13,46;UBERON:0002020,2.19e-13,34;UBERON:0002346,2.66e-12,64;UBERON:0003075,2.66e-12,64;UBERON:0007284,2.66e-12,64;UBERON:0003528,3.45e-11,29;UBERON:0002791,3.45e-11,29;UBERON:0001893,3.45e-11,29;UBERON:0003080,6.67e-11,40;UBERON:0010371,1.44e-10,73;UBERON:0002780,1.80e-10,39;UBERON:0001890,1.80e-10,39;UBERON:0006240,1.80e-10,39;UBERON:0011216,3.74e-09,194;UBERON:0000956,8.22e-09,21;UBERON:0001869,8.22e-09,21;UBERON:0000203,8.22e-09,21;UBERON:0002619,1.37e-08,17;UBERON:0004111,3.00e-08,122;UBERON:0002021,5.58e-08,10;UBERON:0000411,5.58e-08,10;UBERON:0001950,5.58e-08,10;UBERON:0003056,1.40e-07,49;UBERON:0000025,1.45e-07,114;UBERON:0010314,3.44e-07,92 | |||
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| |||
|short_description=p1@Gde1 | |||
}} |
Revision as of 11:35, 14 September 2013
Short description: | p1@Gde1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gde1_5end |
Coexpression cluster: | MCL_coexpression_mm9:240 |
Association with transcript: | 0bp_to_ENSMUST00000038791, NM_019580, uc009jki.1_5end |
EntrezGene: | Gde1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 9.94e-09 | 44 |
neurectodermal cell | 9.94e-09 | 44 |
neural cell | 1.04e-08 | 43 |
embryonic cell | 3.36e-07 | 70 |
CNS neuron (sensu Vertebrata) | 5.90e-07 | 23 |
neuroblast (sensu Vertebrata) | 5.90e-07 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.