FFCP PHASE1:Mm9::chr6:72340653..72340664,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22320|HGNC=|UniProt=O70404|association_with_transcript=0bp_to_NM_016794,uc009cin.2_5end|description=CAGE_peak_3_at_Vamp8_5end|id=chr6:72340653..72340664,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0009569!2.09e-09!66;UBERON:0005256!5.06e-09!47;UBERON:0003914!1.70e-08!47;UBERON:0005172!1.82e-08!49;UBERON:0005173!1.82e-08!49;UBERON:0002417!1.82e-08!49;UBERON:0000916!1.82e-08!49;UBERON:0000926!5.65e-07!193;UBERON:0004120!5.65e-07!193;UBERON:0006603!5.65e-07!193|ontology_enrichment_uberon_v019_2=UBERON:0005256,9.55e-10,45;UBERON:0005172,2.57e-08,49;UBERON:0005173,2.57e-08,49;UBERON:0002417,2.57e-08,49;UBERON:0000916,2.57e-08,49;UBERON:0009569,2.75e-08,66;UBERON:0003914,6.92e-08,47;UBERON:0002100,3.19e-07,90|phase1_expression=0.480446541314382,2.09385244583617,5.45999087267443,0.60492842261366,0,1.6787927191189,0.700837921786577,0.903863264091034,0,0,0,0,0.342401459862411,0.262261207256992,4.99664642723494,8.09901069559304,4.89693314689703,0.946386496074713,0.822686601634433,1.69755860719212,1.19060606211498,0.0992909512008853,1.56719873483361,0.95995453676044,0.45881856213434,6.31655160526522,2.15380998079537,2.80112602491656,0.190023419456374,0.252030129759931,0.886922042621219,3.81018404075779,3.07532393792285,0,0.288851619751275,0,0,1.25559489221072,1.5626706890476,2.09409497589519,1.76469446409304,3.41522742479223,0.485510353031154,4.78407908307194,4.56196190487815,2.9367480345869,0.782391344348039,2.39827672018491,5.05278220289285,5.44403717407994,1.53985063787899,1.43752564364972,0.503347818173209,0.725362142011344,0,4.88792928468299,1.71920063963254,3.6097046459421,0,0,0,1.35537812827653,2.66788438833342,0.899899717281399,0,0.7104801149461,1.19840044207362,2.68952813725088,0,0,0,0.285650984403804,0.441737081903227,0.244981598429908,0.0958454710182364,0.919218786610021,0,0.383062014255563,0,0,0.0914876436024097,0.52091337055676,1.11673199600552,2.8138130501584,0,0,0,0,2.72614295999463,1.51143120213571,0.579728977403356,1.72084775396277,1.3599426674155,1.61910957491345,5.19821133958135,2.68816132258401,1.54488862144927,2.21559419351475,1.55871602761721,1.41335829804136,0.14084341977668,5.13305909657271,0,14.2213340630666,1.29894624606728,0.760079596425296,0.505524445014783,1.94112595522402,0.776813650941515,1.48442139064825,3.46970653532272,4.56698217468212,2.99800146432876,2.56228488939458,0.940709657085638,1.75933227861546,2.47194967734374,1.01219549843938,2.65383165584962,0.970601099684455,1.10420759230197,0.484875253135222,0,1.17112318804619,2.09446706813455,0.255457055208591,1.43778149407104,1.79970819298022,2.1601938602421,0.449371918214468,0,0,0,0.511430914660661,0.62336413367868,0.324482526135515,1.12023300235348,2.36373244159177,0.758168275301024,0.841767423545896,1.43132487258974,0.459804208866946,0,1.05493372485001,0.544291993210623,0.768682321709099,0.187403449119458,0.258703370739016,1.07783996466421,0,1.40760899331159,2.84954452155847,3.05851974148158,1.0447564995665,0.823128545631774,1.99034266818493,0.702213187313235,0.257347907114715,1.42081749697796,1.24275463521301,0.703578179943289,1.08037236876609,0.710234206755631,1.18058539048442,1.23413690309903,1.16266972375204,1.60964040839772,1.16765342367169,0.987359099480883,1.97000956894914,1.54030738137126,1.16959989940266,0.658650345873152,1.8788898626452,0.630869845692382,0,1.32167513193519,0,1.49301775374664,0.928946687441754,0.515469845288373,0.80673409849337,0.889512175379481,0,0,0.164698954724011,1.00534083520108,1.1937388322469,0.19496408711912,0,0.648414149624083,0,1.70701110857774,0.685491075658373,0,0.610953983535943,0.387904974335251,0.420814919341911,0.632365371242573,1.18088118383682,2.04098346193787,1.23397163921801,1.77871576252289,5.17219827719892,3.93117990226406,4.04751802292737,8.72298521970563,5.06472035480075,7.12952384987975,2.87696137450811,1.94562272130042,2.74561413188081,1.43768206527355,0.744281895337007,0.312037673114561,1.26289438973556,1.61457672169721,0.964887042726734,1.84753190166605,1.89491411770485,0.651859905768103,1.86719594352707,1.40814148973101,0.837531287209079,2.85652369063216,2.73187107000918,0.945810864637146,0.664394068946325,0.637819074629948,2.45794972073607,1.20879487306127,2.31438493730419,1.50791283939272,0.54390568381871,0,0.551873492609465,0.160550589987792,0.117211686592203,1.3114795630134,1.00988370881749,0,0,0,0.238968797952552,0,0,0,0,0.395287777946524,0,0.425820255624806,1.78065603667255,0.325773918707152,1.48473110675282,0,0.485561272309963,0.302323556964751,0.943025398779491,1.18120757152309,0.307435147943927,0.775284879504663,0,0,0.316036757935816,1.05418608574999,0,0.340439605753788,1.26042765821917,1.4229455216103,0.428674070063185,0.886701168211368,2.49716344642899,1.64549020602121,2.13125464380219,1.17335854031855,2.1183207086382,0.441056796109924,0.65954501176592,0.484393280087717,0.361877549568935,0.238744688006273,0.820704498725306,0.291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| ||
|EntrezGene=22320 | |||
|HGNC= | |||
|UniProt=O70404 | |||
|association_with_transcript=0bp_to_NM_016794,uc009cin.2_5end | |||
|description=CAGE_peak_3_at_Vamp8_5end | |||
|id=chr6:72340653..72340664,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009569!2.09e-09!66;UBERON:0005256!5.06e-09!47;UBERON:0003914!1.70e-08!47;UBERON:0005172!1.82e-08!49;UBERON:0005173!1.82e-08!49;UBERON:0002417!1.82e-08!49;UBERON:0000916!1.82e-08!49;UBERON:0000926!5.65e-07!193;UBERON:0004120!5.65e-07!193;UBERON:0006603!5.65e-07!193 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005256,9.55e-10,45;UBERON:0005172,2.57e-08,49;UBERON:0005173,2.57e-08,49;UBERON:0002417,2.57e-08,49;UBERON:0000916,2.57e-08,49;UBERON:0009569,2.75e-08,66;UBERON:0003914,6.92e-08,47;UBERON:0002100,3.19e-07,90 | |||
|phase1_expression=0.480446541314382,2.09385244583617,5.45999087267443,0.60492842261366,0,1.6787927191189,0.700837921786577,0.903863264091034,0,0,0,0,0.342401459862411,0.262261207256992,4.99664642723494,8.09901069559304,4.89693314689703,0.946386496074713,0.822686601634433,1.69755860719212,1.19060606211498,0.0992909512008853,1.56719873483361,0.95995453676044,0.45881856213434,6.31655160526522,2.15380998079537,2.80112602491656,0.190023419456374,0.252030129759931,0.886922042621219,3.81018404075779,3.07532393792285,0,0.288851619751275,0,0,1.25559489221072,1.5626706890476,2.09409497589519,1.76469446409304,3.41522742479223,0.485510353031154,4.78407908307194,4.56196190487815,2.9367480345869,0.782391344348039,2.39827672018491,5.05278220289285,5.44403717407994,1.53985063787899,1.43752564364972,0.503347818173209,0.725362142011344,0,4.88792928468299,1.71920063963254,3.6097046459421,0,0,0,1.35537812827653,2.66788438833342,0.899899717281399,0,0.7104801149461,1.19840044207362,2.68952813725088,0,0,0,0.285650984403804,0.441737081903227,0.244981598429908,0.0958454710182364,0.919218786610021,0,0.383062014255563,0,0,0.0914876436024097,0.52091337055676,1.11673199600552,2.8138130501584,0,0,0,0,2.72614295999463,1.51143120213571,0.579728977403356,1.72084775396277,1.3599426674155,1.61910957491345,5.19821133958135,2.68816132258401,1.54488862144927,2.21559419351475,1.55871602761721,1.41335829804136,0.14084341977668,5.13305909657271,0,14.2213340630666,1.29894624606728,0.760079596425296,0.505524445014783,1.94112595522402,0.776813650941515,1.48442139064825,3.46970653532272,4.56698217468212,2.99800146432876,2.56228488939458,0.940709657085638,1.75933227861546,2.47194967734374,1.01219549843938,2.65383165584962,0.970601099684455,1.10420759230197,0.484875253135222,0,1.17112318804619,2.09446706813455,0.255457055208591,1.43778149407104,1.79970819298022,2.1601938602421,0.449371918214468,0,0,0,0.511430914660661,0.62336413367868,0.324482526135515,1.12023300235348,2.36373244159177,0.758168275301024,0.841767423545896,1.43132487258974,0.459804208866946,0,1.05493372485001,0.544291993210623,0.768682321709099,0.187403449119458,0.258703370739016,1.07783996466421,0,1.40760899331159,2.84954452155847,3.05851974148158,1.0447564995665,0.823128545631774,1.99034266818493,0.702213187313235,0.257347907114715,1.42081749697796,1.24275463521301,0.703578179943289,1.08037236876609,0.710234206755631,1.18058539048442,1.23413690309903,1.16266972375204,1.60964040839772,1.16765342367169,0.987359099480883,1.97000956894914,1.54030738137126,1.16959989940266,0.658650345873152,1.8788898626452,0.630869845692382,0,1.32167513193519,0,1.49301775374664,0.928946687441754,0.515469845288373,0.80673409849337,0.889512175379481,0,0,0.164698954724011,1.00534083520108,1.1937388322469,0.19496408711912,0,0.648414149624083,0,1.70701110857774,0.685491075658373,0,0.610953983535943,0.387904974335251,0.420814919341911,0.632365371242573,1.18088118383682,2.04098346193787,1.23397163921801,1.77871576252289,5.17219827719892,3.93117990226406,4.04751802292737,8.72298521970563,5.06472035480075,7.12952384987975,2.87696137450811,1.94562272130042,2.74561413188081,1.43768206527355,0.744281895337007,0.312037673114561,1.26289438973556,1.61457672169721,0.964887042726734,1.84753190166605,1.89491411770485,0.651859905768103,1.86719594352707,1.40814148973101,0.837531287209079,2.85652369063216,2.73187107000918,0.945810864637146,0.664394068946325,0.637819074629948,2.45794972073607,1.20879487306127,2.31438493730419,1.50791283939272,0.54390568381871,0,0.551873492609465,0.160550589987792,0.117211686592203,1.3114795630134,1.00988370881749,0,0,0,0.238968797952552,0,0,0,0,0.395287777946524,0,0.425820255624806,1.78065603667255,0.325773918707152,1.48473110675282,0,0.485561272309963,0.302323556964751,0.943025398779491,1.18120757152309,0.307435147943927,0.775284879504663,0,0,0.316036757935816,1.05418608574999,0,0.340439605753788,1.26042765821917,1.4229455216103,0.428674070063185,0.886701168211368,2.49716344642899,1.64549020602121,2.13125464380219,1.17335854031855,2.1183207086382,0.441056796109924,0.65954501176592,0.484393280087717,0.361877549568935,0.238744688006273,0.820704498725306,0.291480836629851,0.741701208042039,5.12612642393558,1.44470807574256,2.59272338317596,7.53473828018764,4.37421528707281,7.77845788902177,3.22959016988325,2.79902904647316,1.93479963326193,0.954670618015114,0.949007980743406,0.406638934253697,1.08005340821801,1.04544148007234,1.31017538247707,0.809186078308924,1.07449492442937,0.26175594198403,0.129614973291793,1.24267862617385,0,0.598066184175915,1.48912641411388,0.777804753376191,1.54991788173277,2.02747350588934,1.40828686374905,1.0416350787516,0.419437377702843,0.483168241652012,0.864090018773596,0.948033361884535,2.02725215290164,1.43795340030758,1.16928740680016,1.07416017400489,0.39736270956253,0.240390899039938,0.443068581523732,0.605798699688886,0.762068066549998,0.604957110821043,0.974578807397524,0.577271049841977,0.701261413089414,0.453460767230423,0,0.448569283047378,0,0.9659479701609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| |||
|short_description=p3@Vamp8 | |||
}} | |||
Revision as of 10:36, 14 September 2013
| Short description: | p3@Vamp8 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_Vamp8_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_NM_016794, uc009cin.2_5end |
| EntrezGene: | Vamp8 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| trunk mesenchyme | 9.55e-10 | 45 |
| abdomen element | 2.57e-08 | 49 |
| abdominal segment element | 2.57e-08 | 49 |
| abdominal segment of trunk | 2.57e-08 | 49 |
| abdomen | 2.57e-08 | 49 |
| subdivision of trunk | 2.75e-08 | 66 |
| epithelial tube | 6.92e-08 | 47 |
| trunk | 3.19e-07 | 90 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
