FFCP PHASE1:Hg19::chr9:91792949..91792960,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=53358|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=18181|TSSclassifier=S|UniProt=|association_with_transcript=415bp_to_DQ896663_5end|coexpression_cluster_id=C16|description=CAGE_peak_13_at_SHC3_5end|id=chr9:91792949..91792960,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0005795;6.34e-08;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;3.66e-23;3!DOID:127;3.66e-23;3!DOID:0060072;9.45e-18;4|ontology_enrichment_disease_v019_2=DOID:0060084,4.09e-23,3;DOID:127,4.09e-23,3;DOID:0060072,1.03e-17,4|ontology_enrichment_uberon=UBERON:0001869!8.33e-21!32;UBERON:0002619!4.72e-20!22;UBERON:0001049!7.29e-20!57;UBERON:0005068!7.29e-20!57;UBERON:0006241!7.29e-20!57;UBERON:0007135!7.29e-20!57;UBERON:0001893!2.60e-19!34;UBERON:0001950!2.80e-19!20;UBERON:0001017!4.83e-18!82;UBERON:0002791!5.32e-18!33;UBERON:0002020!2.42e-17!34;UBERON:0003528!2.42e-17!34;UBERON:0000956!2.90e-17!25;UBERON:0000203!2.90e-17!25;UBERON:0002616!3.95e-17!59;UBERON:0002780!6.32e-17!41;UBERON:0001890!6.32e-17!41;UBERON:0006240!6.32e-17!41;UBERON:0005743!7.84e-17!86;UBERON:0003080!2.10e-16!42;UBERON:0000073!9.32e-16!94;UBERON:0001016!9.32e-16!94;UBERON:0000955!7.56e-15!69;UBERON:0006238!7.56e-15!69;UBERON:0000200!2.07e-14!6;UBERON:0003075!4.00e-13!86;UBERON:0007284!4.00e-13!86;UBERON:0002346!3.18e-12!90;UBERON:0000025!2.16e-11!194;UBERON:0003056!6.90e-11!61;UBERON:0004111!1.77e-09!241;UBERON:0007023!3.32e-09!115;UBERON:0000477!5.63e-09!286;UBERON:0000119!6.96e-09!312;UBERON:0000483!1.46e-08!309;UBERON:0000033!1.72e-08!123;UBERON:0002771!1.93e-08!3;UBERON:0001872!4.90e-08!5;UBERON:0000153!8.90e-08!129;UBERON:0007811!8.90e-08!129;UBERON:0001871!9.21e-08!7;UBERON:0004121!3.58e-07!169;UBERON:0000924!7.88e-07!173;UBERON:0006601!7.88e-07!173|ontology_enrichment_uberon_v019=UBERON:0000200;1.09e-44;6!UBERON:0002771;3.61e-34;2!UBERON:0002702;5.96e-34;2!UBERON:0001870;3.66e-23;3!UBERON:0001950;1.05e-13;20!UBERON:0002619;1.29e-12;22!UBERON:0000956;2.70e-11;25!UBERON:0000203;2.70e-11;25!UBERON:0001871;8.16e-11;6!UBERON:0003528;2.74e-09;34!UBERON:0002791;2.74e-09;32!UBERON:0002020;2.74e-09;34!UBERON:0001869;2.74e-09;32!UBERON:0001893;1.22e-08;34|ontology_enrichment_uberon_v019_2=UBERON:0000200,9.76e-45,6;UBERON:0002771,3.61e-34,2;UBERON:0002702,5.04e-34,2;UBERON:0001870,3.27e-23,3;UBERON:0001950,1.02e-13,20;UBERON:0002619,1.25e-12,22;UBERON:0000956,2.63e-11,25;UBERON:0000203,2.63e-11,25;UBERON:0001871,8.16e-11,6;UBERON:0002791,3.79e-09,32;UBERON:0001869,3.79e-09,32;UBERON:0003528,1.09e-08,34;UBERON:0002020,1.09e-08,34;UBERON:0001893,1.09e-08,34;UBERON:0002780,2.04e-07,41;UBERON:0001890,2.04e-07,41;UBERON:0003080,2.04e-07,41;UBERON:0006240,2.04e-07,41|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194874010322397,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460511024178389,0.137836572484531,0,0,0,0,0,0,0,0,0.464845549297286,0,0,0,0,0,0,0.286249773483982,0,0,0.190630193923825,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0.876901770507525,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0.137539436597234,0,0.2249738915515,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,1.08599920350743,0,0,0,0,0,0,0,0,0,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=53358 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=18181 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=415bp_to_DQ896663_5end | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_13_at_SHC3_5end | |||
|id=chr9:91792949..91792960,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005795;6.34e-08;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.66e-23;3!DOID:127;3.66e-23;3!DOID:0060072;9.45e-18;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,4.09e-23,3;DOID:127,4.09e-23,3;DOID:0060072,1.03e-17,4 | |||
|ontology_enrichment_uberon=UBERON:0001869!8.33e-21!32;UBERON:0002619!4.72e-20!22;UBERON:0001049!7.29e-20!57;UBERON:0005068!7.29e-20!57;UBERON:0006241!7.29e-20!57;UBERON:0007135!7.29e-20!57;UBERON:0001893!2.60e-19!34;UBERON:0001950!2.80e-19!20;UBERON:0001017!4.83e-18!82;UBERON:0002791!5.32e-18!33;UBERON:0002020!2.42e-17!34;UBERON:0003528!2.42e-17!34;UBERON:0000956!2.90e-17!25;UBERON:0000203!2.90e-17!25;UBERON:0002616!3.95e-17!59;UBERON:0002780!6.32e-17!41;UBERON:0001890!6.32e-17!41;UBERON:0006240!6.32e-17!41;UBERON:0005743!7.84e-17!86;UBERON:0003080!2.10e-16!42;UBERON:0000073!9.32e-16!94;UBERON:0001016!9.32e-16!94;UBERON:0000955!7.56e-15!69;UBERON:0006238!7.56e-15!69;UBERON:0000200!2.07e-14!6;UBERON:0003075!4.00e-13!86;UBERON:0007284!4.00e-13!86;UBERON:0002346!3.18e-12!90;UBERON:0000025!2.16e-11!194;UBERON:0003056!6.90e-11!61;UBERON:0004111!1.77e-09!241;UBERON:0007023!3.32e-09!115;UBERON:0000477!5.63e-09!286;UBERON:0000119!6.96e-09!312;UBERON:0000483!1.46e-08!309;UBERON:0000033!1.72e-08!123;UBERON:0002771!1.93e-08!3;UBERON:0001872!4.90e-08!5;UBERON:0000153!8.90e-08!129;UBERON:0007811!8.90e-08!129;UBERON:0001871!9.21e-08!7;UBERON:0004121!3.58e-07!169;UBERON:0000924!7.88e-07!173;UBERON:0006601!7.88e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0000200;1.09e-44;6!UBERON:0002771;3.61e-34;2!UBERON:0002702;5.96e-34;2!UBERON:0001870;3.66e-23;3!UBERON:0001950;1.05e-13;20!UBERON:0002619;1.29e-12;22!UBERON:0000956;2.70e-11;25!UBERON:0000203;2.70e-11;25!UBERON:0001871;8.16e-11;6!UBERON:0003528;2.74e-09;34!UBERON:0002791;2.74e-09;32!UBERON:0002020;2.74e-09;34!UBERON:0001869;2.74e-09;32!UBERON:0001893;1.22e-08;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000200,9.76e-45,6;UBERON:0002771,3.61e-34,2;UBERON:0002702,5.04e-34,2;UBERON:0001870,3.27e-23,3;UBERON:0001950,1.02e-13,20;UBERON:0002619,1.25e-12,22;UBERON:0000956,2.63e-11,25;UBERON:0000203,2.63e-11,25;UBERON:0001871,8.16e-11,6;UBERON:0002791,3.79e-09,32;UBERON:0001869,3.79e-09,32;UBERON:0003528,1.09e-08,34;UBERON:0002020,1.09e-08,34;UBERON:0001893,1.09e-08,34;UBERON:0002780,2.04e-07,41;UBERON:0001890,2.04e-07,41;UBERON:0003080,2.04e-07,41;UBERON:0006240,2.04e-07,41 | |||
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|short_description=p13@SHC3 | |||
}} |
Revision as of 09:42, 14 September 2013
Short description: | p13@SHC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_SHC3_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 415bp_to_DQ896663_5end |
EntrezGene: | SHC3 |
HGNC: | 18181 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gyrus | 9.76e-45 | 6 |
middle temporal gyrus | 3.61e-34 | 2 |
middle frontal gyrus | 5.04e-34 | 2 |
frontal cortex | 3.27e-23 | 3 |
neocortex | 1.02e-13 | 20 |
regional part of cerebral cortex | 1.25e-12 | 22 |
cerebral cortex | 2.63e-11 | 25 |
pallium | 2.63e-11 | 25 |
temporal lobe | 8.16e-11 | 6 |
regional part of telencephalon | 3.79e-09 | 32 |
cerebral hemisphere | 3.79e-09 | 32 |
brain grey matter | 1.09e-08 | 34 |
gray matter | 1.09e-08 | 34 |
telencephalon | 1.09e-08 | 34 |
regional part of forebrain | 2.04e-07 | 41 |
forebrain | 2.04e-07 | 41 |
anterior neural tube | 2.04e-07 | 41 |
future forebrain | 2.04e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 4.09e-23 | 3 |
leiomyoma | 4.09e-23 | 3 |
benign neoplasm | 1.03e-17 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.