FFCP PHASE1:Hg19::chr9:75780018..75780038,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C827|description=CAGE_peak_at_chr9:75780018..75780038,+|id=chr9:75780018..75780038,+|ontology_enrichment_celltype=CL:0002057!1.35e-23!42;CL:0000860!1.69e-23!45;CL:0000557!2.26e-18!71;CL:0002009!1.48e-17!65;CL:0000839!9.97e-17!70;CL:0002194!1.66e-16!63;CL:0000576!1.66e-16!63;CL:0000040!1.66e-16!63;CL:0000559!1.66e-16!63;CL:0000766!6.67e-15!76;CL:0000063!1.38e-09!578;CL:0000134!3.29e-09!358;CL:0000763!1.81e-08!112;CL:0000049!1.81e-08!112;CL:0002320!1.93e-08!365;CL:0000219!1.78e-07!390;CL:0000048!1.96e-07!430;CL:0000723!2.97e-07!436;CL:0002031!3.35e-07!124;CL:0000144!4.81e-07!625;CL:0000012!8.00e-07!682;CL:0000548!8.61e-07!679;CL:0000004!8.61e-07!679;CL:0000255!8.61e-07!679;CL:0000034!8.69e-07!444|ontology_enrichment_celltype_v019=CL:0000860;3.51e-47;33!CL:0002057;3.51e-47;33!CL:0000473;1.08e-32;39!CL:0000234;1.08e-32;39!CL:0000576;8.28e-24;48!CL:0000766;4.73e-15;69!CL:0000763;3.30e-08;100|ontology_enrichment_celltype_v019_2=CL:0000860,5.43e-43,42;CL:0002057,5.43e-43,42;CL:0000473,1.49e-36,48;CL:0000234,1.49e-36,48;CL:0000557,1.26e-31,67;CL:0000839,4.45e-30,66;CL:0002009,1.65e-28,61;CL:0002194,1.44e-27,59;CL:0000576,1.44e-27,59;CL:0000040,1.44e-27,59;CL:0000559,1.44e-27,59;CL:0000766,7.43e-27,72;CL:0000763,1.30e-17,108;CL:0000049,1.30e-17,108;CL:0002031,7.51e-15,120;CL:0000738,4.30e-12,136;CL:0002087,2.05e-11,115;CL:0000134,1.67e-10,354;CL:0002320,4.99e-10,361;CL:0002032,9.66e-10,161;CL:0000837,9.66e-10,161;CL:0000037,5.45e-09,168;CL:0000988,8.61e-09,177;CL:0000219,2.25e-08,386;CL:0000048,2.45e-07,427;CL:0000034,3.70e-07,441;CL:0000723,4.80e-07,433|ontology_enrichment_development_v019=CL:0002057;5.95e-34;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;3.19e-08;3!DOID:127;3.19e-08;3|ontology_enrichment_disease_v019_2=DOID:0060084,3.87e-08,3;DOID:127,3.87e-08,3|ontology_enrichment_uberon=UBERON:0002371!5.24e-17!80;UBERON:0001474!5.21e-15!86;UBERON:0004765!7.98e-15!101;UBERON:0001434!7.98e-15!101;UBERON:0002390!2.56e-10!102;UBERON:0003061!2.56e-10!102;UBERON:0002193!1.50e-09!112;UBERON:0002204!4.51e-09!167;UBERON:0002384!1.31e-08!375;UBERON:0002405!1.38e-08!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.95e-31,76;UBERON:0001474,7.82e-28,82;UBERON:0004765,8.43e-28,90;UBERON:0001434,4.96e-24,100;UBERON:0002405,1.98e-23,93;UBERON:0002390,9.29e-22,98;UBERON:0003061,9.29e-22,98;UBERON:0002193,6.94e-19,108;UBERON:0002204,5.63e-14,167;UBERON:0003081,2.54e-12,203;UBERON:0002384,2.19e-09,371;UBERON:0000926,2.33e-08,315;UBERON:0004120,2.33e-08,315;UBERON:0006603,2.33e-08,315|phase1_expression=0.726713517082227,2.5692062866918,0.704772020479856,0,0.893922188854576,0,0,0,0.522371256399677,0,0,0,0,0.495065411840187,0,0.672325146451775,0,0,0.487932798790507,0,0,0,0.572471974262113,0.684372125364421,0.502170558379211,0.0764134057479513,0,0,0.393364276848904,0,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0.401088894940283,1.08505435357926,0.447830948479849,0,0,3.78035420826868,2.26725566213286,1.94067248950253,1.39457422143411,2.05583944010913,3.40677007984614,3.45230870786581,2.56160706529101,5.67557351732605,4.13694816883942,1.93645405075148,2.70852973188684,4.1413314699373,2.18324920046277,4.94391665779186,10.7129362329816,0.962787081228281,1.27867425159808,1.9791078011203,3.78980949481101,0.852449501065388,2.90209238628584,0.56738522469114,1.86846674698672,4.27122730936464,3.12889751052121,7.38442071997397,4.23779651843358,1.47311054395026,6.64571013625857,0.211255286311942,0.425208599930087,0.419317291016752,0.786300418025466,0.750884464207532,0.803627933485401,0,0.19891667719909,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0.196709770113833,0.786021525498329,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.260118695119756,0.164437904603676,0.276350017785848,0.289803085735052,0.296573126324121,0.267540828089713,0,0,0.766440987203842,1.03088233644789,1.01207876807801,0.637130828648193,0,0,0.602300476311091,0.511946444617674,0,0.710331756132051,0,0,1.06976078313403,0.434473211648397,0,0.670700859703636,0.12786256184353,1.0843174571537,0,0.579386075843295,0,0,0.283604451492204,0.665188192387692,0.614843499851882,0,0,0,0.324547393654683,0.522389211897802,0.531831842075461,0,0,0,0,0,0,0,0.419499436209906,0.550236083880135,0.208994966536811,0,0,0.33472061276467,0,0.760272105718513,0,0.367663080345869,0,0.17859945656816,0.44905874525234,0,0,0,0,0,0,0,0.993943903390637,0.633152558322899,0.264818361626438,1.72101972449288,1.77334191099179,0,0,0,0,0.67355336034844,0.163461903113459,0,0,0,0.624320153660641,0,0.149448680551801,0.23486899728753,0.323745888736263,0,0.61246251376468,0.122834317311768,0.413303124703062,0,0,0,0,0.168336113954066,0.125118519871964,0.554128230968366,0,0.30648779579902,0.150238058906597,0.2268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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C827 | |||
|description=CAGE_peak_at_chr9:75780018..75780038,+ | |||
|id=chr9:75780018..75780038,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.35e-23!42;CL:0000860!1.69e-23!45;CL:0000557!2.26e-18!71;CL:0002009!1.48e-17!65;CL:0000839!9.97e-17!70;CL:0002194!1.66e-16!63;CL:0000576!1.66e-16!63;CL:0000040!1.66e-16!63;CL:0000559!1.66e-16!63;CL:0000766!6.67e-15!76;CL:0000063!1.38e-09!578;CL:0000134!3.29e-09!358;CL:0000763!1.81e-08!112;CL:0000049!1.81e-08!112;CL:0002320!1.93e-08!365;CL:0000219!1.78e-07!390;CL:0000048!1.96e-07!430;CL:0000723!2.97e-07!436;CL:0002031!3.35e-07!124;CL:0000144!4.81e-07!625;CL:0000012!8.00e-07!682;CL:0000548!8.61e-07!679;CL:0000004!8.61e-07!679;CL:0000255!8.61e-07!679;CL:0000034!8.69e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.51e-47;33!CL:0002057;3.51e-47;33!CL:0000473;1.08e-32;39!CL:0000234;1.08e-32;39!CL:0000576;8.28e-24;48!CL:0000766;4.73e-15;69!CL:0000763;3.30e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.43e-43,42;CL:0002057,5.43e-43,42;CL:0000473,1.49e-36,48;CL:0000234,1.49e-36,48;CL:0000557,1.26e-31,67;CL:0000839,4.45e-30,66;CL:0002009,1.65e-28,61;CL:0002194,1.44e-27,59;CL:0000576,1.44e-27,59;CL:0000040,1.44e-27,59;CL:0000559,1.44e-27,59;CL:0000766,7.43e-27,72;CL:0000763,1.30e-17,108;CL:0000049,1.30e-17,108;CL:0002031,7.51e-15,120;CL:0000738,4.30e-12,136;CL:0002087,2.05e-11,115;CL:0000134,1.67e-10,354;CL:0002320,4.99e-10,361;CL:0002032,9.66e-10,161;CL:0000837,9.66e-10,161;CL:0000037,5.45e-09,168;CL:0000988,8.61e-09,177;CL:0000219,2.25e-08,386;CL:0000048,2.45e-07,427;CL:0000034,3.70e-07,441;CL:0000723,4.80e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;5.95e-34;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.19e-08;3!DOID:127;3.19e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.87e-08,3;DOID:127,3.87e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0002371!5.24e-17!80;UBERON:0001474!5.21e-15!86;UBERON:0004765!7.98e-15!101;UBERON:0001434!7.98e-15!101;UBERON:0002390!2.56e-10!102;UBERON:0003061!2.56e-10!102;UBERON:0002193!1.50e-09!112;UBERON:0002204!4.51e-09!167;UBERON:0002384!1.31e-08!375;UBERON:0002405!1.38e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.95e-31,76;UBERON:0001474,7.82e-28,82;UBERON:0004765,8.43e-28,90;UBERON:0001434,4.96e-24,100;UBERON:0002405,1.98e-23,93;UBERON:0002390,9.29e-22,98;UBERON:0003061,9.29e-22,98;UBERON:0002193,6.94e-19,108;UBERON:0002204,5.63e-14,167;UBERON:0003081,2.54e-12,203;UBERON:0002384,2.19e-09,371;UBERON:0000926,2.33e-08,315;UBERON:0004120,2.33e-08,315;UBERON:0006603,2.33e-08,315 | |||
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| |||
|short_description=p@chr9:75780018..75780038,+ | |||
}} |
Revision as of 09:24, 14 September 2013
Short description: | p@chr9:75780018..75780038, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:75780018..75780038, + |
Coexpression cluster: | C827_CD14_throat_tongue_chorionic_esophagus_endometrioid_Olfactory |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.43e-43 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.43e-43 | 42 |
defensive cell | 1.49e-36 | 48 |
phagocyte | 1.49e-36 | 48 |
granulocyte monocyte progenitor cell | 1.26e-31 | 67 |
myeloid lineage restricted progenitor cell | 4.45e-30 | 66 |
macrophage dendritic cell progenitor | 1.65e-28 | 61 |
monopoietic cell | 1.44e-27 | 59 |
monocyte | 1.44e-27 | 59 |
monoblast | 1.44e-27 | 59 |
promonocyte | 1.44e-27 | 59 |
myeloid leukocyte | 7.43e-27 | 72 |
myeloid cell | 1.30e-17 | 108 |
common myeloid progenitor | 1.30e-17 | 108 |
hematopoietic lineage restricted progenitor cell | 7.51e-15 | 120 |
leukocyte | 4.30e-12 | 136 |
nongranular leukocyte | 2.05e-11 | 115 |
mesenchymal cell | 1.67e-10 | 354 |
connective tissue cell | 4.99e-10 | 361 |
hematopoietic oligopotent progenitor cell | 9.66e-10 | 161 |
hematopoietic multipotent progenitor cell | 9.66e-10 | 161 |
hematopoietic stem cell | 5.45e-09 | 168 |
hematopoietic cell | 8.61e-09 | 177 |
motile cell | 2.25e-08 | 386 |
multi fate stem cell | 2.45e-07 | 427 |
stem cell | 3.70e-07 | 441 |
somatic stem cell | 4.80e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.95e-31 | 76 |
bone element | 7.82e-28 | 82 |
skeletal element | 8.43e-28 | 90 |
skeletal system | 4.96e-24 | 100 |
immune system | 1.98e-23 | 93 |
hematopoietic system | 9.29e-22 | 98 |
blood island | 9.29e-22 | 98 |
hemolymphoid system | 6.94e-19 | 108 |
musculoskeletal system | 5.63e-14 | 167 |
lateral plate mesoderm | 2.54e-12 | 203 |
connective tissue | 2.19e-09 | 371 |
mesoderm | 2.33e-08 | 315 |
mesoderm-derived structure | 2.33e-08 | 315 |
presumptive mesoderm | 2.33e-08 | 315 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.87e-08 | 3 |
leiomyoma | 3.87e-08 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.