FFCP PHASE1:Mm9::chr6:129483386..129483419,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=57436|HGNC=|MCL_coexpression_id=0|UniProt=|association_with_transcript=12bp_to_uc009ega.1_5end|description=CAGE_peak_3_at_Gabarapl1_5end|id=chr6:129483386..129483419,+|ontology_enrichment_celltype=CL:0000055!1.15e-07!50;CL:0000393!5.18e-07!39;CL:0000211!5.18e-07!39|ontology_enrichment_celltype_v019_2=CL:0000393,5.16e-07,39;CL:0000211,5.16e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.04e-17!102;UBERON:0000924!2.04e-17!102;UBERON:0006601!2.04e-17!102;UBERON:0000073!2.75e-17!75;UBERON:0001016!2.75e-17!75;UBERON:0001017!8.22e-17!73;UBERON:0005743!8.22e-17!73;UBERON:0002346!1.44e-14!71;UBERON:0003075!1.44e-14!71;UBERON:0007284!1.44e-14!71;UBERON:0000033!2.30e-13!63;UBERON:0001049!2.63e-13!52;UBERON:0005068!2.63e-13!52;UBERON:0006241!2.63e-13!52;UBERON:0007135!2.63e-13!52;UBERON:0000955!1.60e-12!50;UBERON:0006238!1.60e-12!50;UBERON:0002616!4.90e-12!49;UBERON:0002020!8.36e-12!34;UBERON:0003056!4.55e-10!49;UBERON:0002791!1.80e-09!29;UBERON:0003528!1.80e-09!29;UBERON:0001893!1.80e-09!29;UBERON:0003080!2.02e-09!40;UBERON:0004111!3.60e-09!122;UBERON:0002780!6.20e-09!39;UBERON:0001890!6.20e-09!39;UBERON:0006240!6.20e-09!39;UBERON:0000025!9.56e-09!114;UBERON:0002021!9.44e-08!10;UBERON:0000411!9.44e-08!10;UBERON:0001950!9.44e-08!10;UBERON:0002619!9.50e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.89e-17,75;UBERON:0004121,4.42e-17,95;UBERON:0000924,4.42e-17,95;UBERON:0006601,4.42e-17,95;UBERON:0001017,8.66e-17,73;UBERON:0002346,1.67e-14,64;UBERON:0003075,1.67e-14,64;UBERON:0007284,1.67e-14,64;UBERON:0000073,2.29e-14,54;UBERON:0001049,2.78e-13,52;UBERON:0005068,2.78e-13,52;UBERON:0006241,2.78e-13,52;UBERON:0007135,2.78e-13,52;UBERON:0010371,4.19e-13,73;UBERON:0010314,5.39e-12,92;UBERON:0002020,8.30e-12,34;UBERON:0000955,6.03e-11,47;UBERON:0006238,6.03e-11,47;UBERON:0002616,1.78e-10,46;UBERON:0003056,4.78e-10,49;UBERON:0003528,1.79e-09,29;UBERON:0002791,1.79e-09,29;UBERON:0001893,1.79e-09,29;UBERON:0003080,2.13e-09,40;UBERON:0004111,3.76e-09,122;UBERON:0002780,6.54e-09,39;UBERON:0001890,6.54e-09,39;UBERON:0006240,6.54e-09,39;UBERON:0000025,9.99e-09,114;UBERON:0002021,9.41e-08,10;UBERON:0000411,9.41e-08,10;UBERON:0001950,9.41e-08,10;UBERON:0002619,9.46e-08,17|phase1_expression=7.52699581392532,2.44282785347553,5.45999087267443,0.30246421130683,1.00179145989269,1.00727563147134,0.934450562382103,1.29123323441576,2.39340827657833,2.10658073689794,3.25314139628459,2.31339261086476,0,0,7.32841475994458,8.50396123037269,2.79824751251259,0.315462165358238,0.959801035240171,0.84877930359606,163.198073799903,6.25532992565577,8.61959304158487,1.75991665072747,1.83527424853736,4.59385571292016,2.15380998079537,2.15471232685889,0.190023419456374,0.756090389279792,3.10422714917427,16.5107975099504,11.0711661765223,31.6963362030877,0.288851619751275,0.498703936075477,0.816677425049476,0.418531630736908,0.7813353445238,1.57057123192139,1.17646297606203,0,0.485510353031154,6.29484089877886,7.90740063512214,8.81024410376071,1.56478268869608,5.45062890951116,9.44650585758229,9.91592485278845,6.01941612989059,4.31257693094915,0.671130424230945,0.725362142011344,1.68046899571232,11.8339340576536,8.5960031981627,19.5955395065428,15.9830004079082,25.9205579843296,22.1840991227163,5.76035704517525,7.11435836888911,13.0485459005803,3.9554654502679,16.3410426437603,8.68840320503374,9.22123932771731,2.17748185847803,2.97013064329719,2.3135745748652,57.9871498339721,65.8188252035808,4.04219637409348,3.45043695665651,9.19218786610021,105.711245759413,111.343358810284,118.891456740332,15.9582408153535,16.8337264228434,8.33461392890816,120.607055568597,117.617385496621,97.4852820816049,37.7124589406295,32.8878582645928,20.8767379324337,11.0560242266449,8.31287161174641,8.40607017234866,15.487629785665,45.5580793584193,26.9851595818909,7.79731700937203,11.2006721774334,30.6168835887219,4.4311883870295,7.27400812888033,6.00677276667578,8.45060518660083,3.84979432242953,2.54805239706646,0,2.16491041011214,2.78695852022608,0.505524445014783,30.1445442458318,2.07150306917737,13.8051189330287,3.64319186208885,3.34912026143355,5.07354093963329,7.68685466818375,11.0533384707563,6.53466274914312,17.5508427091405,5.78397427679647,6.19227386364912,1.7794353494215,2.87093973998512,4.363877278217,9.31958806090611,30.7419836862124,26.1808383516819,1.27728527604296,16.2948569328052,18.5969846607956,12.7070227073065,114.140467226475,149.602697121691,18.0942267042525,132.10648334613,143.712087019646,116.776881042473,116.975950671853,3.7680564624617,7.46441823660558,20.7232661915613,10.9429765060966,1.82168620147785,3.44853156650209,6.66229880279792,7.68594570962147,10.0694018743965,11.2740073850668,12.6497328155634,48.6362336989349,1.07783996466421,1.51284864134255,1.40760899331159,1.31517439456545,1.11218899690239,4.179025998266,7.40815691068596,1.99034266818493,6.31991868581911,14.1541348913093,8.24074148247219,2.27838349789052,3.28336483973535,3.24111710629827,3.55117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| ||
|EntrezGene=57436 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt= | |||
|association_with_transcript=12bp_to_uc009ega.1_5end | |||
|description=CAGE_peak_3_at_Gabarapl1_5end | |||
|id=chr6:129483386..129483419,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.15e-07!50;CL:0000393!5.18e-07!39;CL:0000211!5.18e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,5.16e-07,39;CL:0000211,5.16e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.04e-17!102;UBERON:0000924!2.04e-17!102;UBERON:0006601!2.04e-17!102;UBERON:0000073!2.75e-17!75;UBERON:0001016!2.75e-17!75;UBERON:0001017!8.22e-17!73;UBERON:0005743!8.22e-17!73;UBERON:0002346!1.44e-14!71;UBERON:0003075!1.44e-14!71;UBERON:0007284!1.44e-14!71;UBERON:0000033!2.30e-13!63;UBERON:0001049!2.63e-13!52;UBERON:0005068!2.63e-13!52;UBERON:0006241!2.63e-13!52;UBERON:0007135!2.63e-13!52;UBERON:0000955!1.60e-12!50;UBERON:0006238!1.60e-12!50;UBERON:0002616!4.90e-12!49;UBERON:0002020!8.36e-12!34;UBERON:0003056!4.55e-10!49;UBERON:0002791!1.80e-09!29;UBERON:0003528!1.80e-09!29;UBERON:0001893!1.80e-09!29;UBERON:0003080!2.02e-09!40;UBERON:0004111!3.60e-09!122;UBERON:0002780!6.20e-09!39;UBERON:0001890!6.20e-09!39;UBERON:0006240!6.20e-09!39;UBERON:0000025!9.56e-09!114;UBERON:0002021!9.44e-08!10;UBERON:0000411!9.44e-08!10;UBERON:0001950!9.44e-08!10;UBERON:0002619!9.50e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.89e-17,75;UBERON:0004121,4.42e-17,95;UBERON:0000924,4.42e-17,95;UBERON:0006601,4.42e-17,95;UBERON:0001017,8.66e-17,73;UBERON:0002346,1.67e-14,64;UBERON:0003075,1.67e-14,64;UBERON:0007284,1.67e-14,64;UBERON:0000073,2.29e-14,54;UBERON:0001049,2.78e-13,52;UBERON:0005068,2.78e-13,52;UBERON:0006241,2.78e-13,52;UBERON:0007135,2.78e-13,52;UBERON:0010371,4.19e-13,73;UBERON:0010314,5.39e-12,92;UBERON:0002020,8.30e-12,34;UBERON:0000955,6.03e-11,47;UBERON:0006238,6.03e-11,47;UBERON:0002616,1.78e-10,46;UBERON:0003056,4.78e-10,49;UBERON:0003528,1.79e-09,29;UBERON:0002791,1.79e-09,29;UBERON:0001893,1.79e-09,29;UBERON:0003080,2.13e-09,40;UBERON:0004111,3.76e-09,122;UBERON:0002780,6.54e-09,39;UBERON:0001890,6.54e-09,39;UBERON:0006240,6.54e-09,39;UBERON:0000025,9.99e-09,114;UBERON:0002021,9.41e-08,10;UBERON:0000411,9.41e-08,10;UBERON:0001950,9.41e-08,10;UBERON:0002619,9.46e-08,17 | |||
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| |||
|short_description=p3@Gabarapl1 | |||
}} |
Revision as of 09:07, 14 September 2013
Short description: | p3@Gabarapl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gabarapl1_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 12bp_to_uc009ega.1_5end |
EntrezGene: | Gabarapl1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 5.16e-07 | 39 |
electrically active cell | 5.16e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.89e-17 | 75 |
ectoderm-derived structure | 4.42e-17 | 95 |
ectoderm | 4.42e-17 | 95 |
presumptive ectoderm | 4.42e-17 | 95 |
central nervous system | 8.66e-17 | 73 |
neurectoderm | 1.67e-14 | 64 |
neural plate | 1.67e-14 | 64 |
presumptive neural plate | 1.67e-14 | 64 |
regional part of nervous system | 2.29e-14 | 54 |
neural tube | 2.78e-13 | 52 |
neural rod | 2.78e-13 | 52 |
future spinal cord | 2.78e-13 | 52 |
neural keel | 2.78e-13 | 52 |
ecto-epithelium | 4.19e-13 | 73 |
structure with developmental contribution from neural crest | 5.39e-12 | 92 |
gray matter | 8.30e-12 | 34 |
brain | 6.03e-11 | 47 |
future brain | 6.03e-11 | 47 |
regional part of brain | 1.78e-10 | 46 |
pre-chordal neural plate | 4.78e-10 | 49 |
brain grey matter | 1.79e-09 | 29 |
regional part of telencephalon | 1.79e-09 | 29 |
telencephalon | 1.79e-09 | 29 |
anterior neural tube | 2.13e-09 | 40 |
anatomical conduit | 3.76e-09 | 122 |
regional part of forebrain | 6.54e-09 | 39 |
forebrain | 6.54e-09 | 39 |
future forebrain | 6.54e-09 | 39 |
tube | 9.99e-09 | 114 |
occipital lobe | 9.41e-08 | 10 |
visual cortex | 9.41e-08 | 10 |
neocortex | 9.41e-08 | 10 |
regional part of cerebral cortex | 9.46e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.