FFCP PHASE1:Mm9::chr6:113327781..113327849,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=101206|HGNC=|MCL_coexpression_id=735|UniProt=Q8R0L9|association_with_transcript=27bp_to_ENSMUST00000032410_5end|description=CAGE_peak_1_at_Tada3_5end|id=chr6:113327781..113327849,-|ontology_enrichment_celltype=CL:0002319!2.25e-16!43;CL:0000221!8.65e-16!44;CL:0000133!8.65e-16!44;CL:0000540!3.75e-13!33;CL:0000047!3.75e-13!33;CL:0000031!3.75e-13!33;CL:0000404!3.75e-13!33;CL:0000117!5.90e-11!23;CL:0000337!5.90e-11!23;CL:0000055!8.46e-11!50;CL:0000393!1.50e-08!39;CL:0000211!1.50e-08!39|ontology_enrichment_celltype_v019_2=CL:0002319,2.25e-16,43;CL:0000221,8.65e-16,44;CL:0000133,8.65e-16,44;CL:0000540,3.75e-13,33;CL:0000047,3.75e-13,33;CL:0000031,3.75e-13,33;CL:0000404,3.75e-13,33;CL:0000117,5.90e-11,23;CL:0000337,5.90e-11,23;CL:0000393,1.50e-08,39;CL:0000211,1.50e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.22e-28!73;UBERON:0005743!3.22e-28!73;UBERON:0000073!9.13e-27!75;UBERON:0001016!9.13e-27!75;UBERON:0004121!1.42e-26!102;UBERON:0000924!1.42e-26!102;UBERON:0006601!1.42e-26!102;UBERON:0002346!7.98e-25!71;UBERON:0003075!7.98e-25!71;UBERON:0007284!7.98e-25!71;UBERON:0001049!6.05e-20!52;UBERON:0005068!6.05e-20!52;UBERON:0006241!6.05e-20!52;UBERON:0007135!6.05e-20!52;UBERON:0003056!7.13e-20!49;UBERON:0000033!2.07e-19!63;UBERON:0000955!1.71e-18!50;UBERON:0006238!1.71e-18!50;UBERON:0002616!3.79e-18!49;UBERON:0002780!7.11e-17!39;UBERON:0001890!7.11e-17!39;UBERON:0006240!7.11e-17!39;UBERON:0003080!1.80e-16!40;UBERON:0002020!1.02e-15!34;UBERON:0007811!3.20e-14!86;UBERON:0000153!7.29e-14!94;UBERON:0002791!1.76e-13!29;UBERON:0003528!1.76e-13!29;UBERON:0001893!1.76e-13!29;UBERON:0000956!1.24e-10!21;UBERON:0001869!1.24e-10!21;UBERON:0000203!1.24e-10!21;UBERON:0002619!1.46e-08!17;UBERON:0000479!3.78e-07!349|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.22e-28,73;UBERON:0001016,9.13e-27,75;UBERON:0004121,6.05e-26,95;UBERON:0000924,6.05e-26,95;UBERON:0006601,6.05e-26,95;UBERON:0002346,1.00e-24,64;UBERON:0003075,1.00e-24,64;UBERON:0007284,1.00e-24,64;UBERON:0000073,1.50e-20,54;UBERON:0010371,2.23e-20,73;UBERON:0001049,6.05e-20,52;UBERON:0005068,6.05e-20,52;UBERON:0006241,6.05e-20,52;UBERON:0007135,6.05e-20,52;UBERON:0003056,7.13e-20,49;UBERON:0010314,3.36e-19,92;UBERON:0000955,3.72e-18,47;UBERON:0006238,3.72e-18,47;UBERON:0002616,8.13e-18,46;UBERON:0002780,7.11e-17,39;UBERON:0001890,7.11e-17,39;UBERON:0006240,7.11e-17,39;UBERON:0003080,1.80e-16,40;UBERON:0002020,1.02e-15,34;UBERON:0003528,1.76e-13,29;UBERON:0002791,1.76e-13,29;UBERON:0001893,1.76e-13,29;UBERON:0000956,1.24e-10,21;UBERON:0001869,1.24e-10,21;UBERON:0000203,1.24e-10,21;UBERON:0000922,8.33e-09,320;UBERON:0002619,1.46e-08,17;UBERON:0000479,3.78e-07,349|phase1_expression=6.24580503708696,6.2815573375085,5.91499011206397,7.25914107136392,5.50985302940982,7.72244650794693,7.00837921786577,5.03580961422147,5.490760163915,6.08567768437183,4.96532107853964,3.98860794976682,4.62241970814255,5.68232615723483,6.32908547449759,3.44207954562704,3.49780939064073,2.83915948822414,3.29074640653773,5.09267582157636,19.6450000248971,4.0709289992363,1.56719873483361,5.75972722056264,5.96464130774642,4.01962374880514,3.87685796543167,6.24866574789078,7.22088993934221,6.04872311423834,4.8780712344167,8.89042942843484,12.916360539276,0,5.48818077527422,5.15327400611326,5.10423390655923,2.51118978442145,3.1253413780952,1.57057123192139,3.52938892818609,2.04913645487534,2.42755176515577,4.53228544712078,4.56196190487815,3.67093504323363,35.2076104956618,20.494364699762,22.8473630043851,21.1928589990969,16.2384249085421,24.4379359420452,2.01339127269284,6.5282592781021,2.01656279485478,3.34437266846731,3.15186783932632,5.67239301505187,29.5382032855013,31.739458756322,25.3532561402472,9.82649143000483,16.0073063300005,5.84934816232909,7.9109309005358,9.9467216092454,16.7776061890307,25.7426264565442,26.0260926894279,38.0716746095368,35.7552434297349,13.4255962669788,11.7060326704355,33.9299513825423,32.9708420302733,48.7185956903311,8.8092704799511,9.06580100404833,10.2916377281683,38.3789097294864,36.0461315793494,36.4639359389732,11.1673199600552,7.87867654044352,8.25110537994775,12.6690291753677,14.0947963991112,22.7407323906867,4.54357159999104,5.97015324843606,6.37701875143691,2.58127163094416,3.39985666853875,3.2382191498269,7.79731700937203,4.48026887097336,7.72444310724635,4.09032774187339,5.45550609666024,3.5333957451034,5.91542363062058,2.56652954828636,0,0,4.32982082022428,4.05375784760158,4.04419556011827,4.11061966988616,3.10725460376606,6.82833839698194,9.1947223186052,11.2652226975492,11.761390360059,8.74191315205211,6.58496759959947,8.29399502775858,10.6293836125781,2.4581890676385,2.65383165584962,6.47067399789637,5.74187947997023,6.30337829075789,7.45567044872489,12.296793474485,8.58731497935166,7.66371165625774,2.27648736561249,1.79970819298022,1.39777249780371,6.89036941262184,12.8100168789215,26.6387226479273,10.6032835317289,14.5757810678288,9.14267396062064,8.76102820565891,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| ||
|EntrezGene=101206 | |||
|HGNC= | |||
|MCL_coexpression_id=735 | |||
|UniProt=Q8R0L9 | |||
|association_with_transcript=27bp_to_ENSMUST00000032410_5end | |||
|description=CAGE_peak_1_at_Tada3_5end | |||
|id=chr6:113327781..113327849,- | |||
|ontology_enrichment_celltype=CL:0002319!2.25e-16!43;CL:0000221!8.65e-16!44;CL:0000133!8.65e-16!44;CL:0000540!3.75e-13!33;CL:0000047!3.75e-13!33;CL:0000031!3.75e-13!33;CL:0000404!3.75e-13!33;CL:0000117!5.90e-11!23;CL:0000337!5.90e-11!23;CL:0000055!8.46e-11!50;CL:0000393!1.50e-08!39;CL:0000211!1.50e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.25e-16,43;CL:0000221,8.65e-16,44;CL:0000133,8.65e-16,44;CL:0000540,3.75e-13,33;CL:0000047,3.75e-13,33;CL:0000031,3.75e-13,33;CL:0000404,3.75e-13,33;CL:0000117,5.90e-11,23;CL:0000337,5.90e-11,23;CL:0000393,1.50e-08,39;CL:0000211,1.50e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.22e-28!73;UBERON:0005743!3.22e-28!73;UBERON:0000073!9.13e-27!75;UBERON:0001016!9.13e-27!75;UBERON:0004121!1.42e-26!102;UBERON:0000924!1.42e-26!102;UBERON:0006601!1.42e-26!102;UBERON:0002346!7.98e-25!71;UBERON:0003075!7.98e-25!71;UBERON:0007284!7.98e-25!71;UBERON:0001049!6.05e-20!52;UBERON:0005068!6.05e-20!52;UBERON:0006241!6.05e-20!52;UBERON:0007135!6.05e-20!52;UBERON:0003056!7.13e-20!49;UBERON:0000033!2.07e-19!63;UBERON:0000955!1.71e-18!50;UBERON:0006238!1.71e-18!50;UBERON:0002616!3.79e-18!49;UBERON:0002780!7.11e-17!39;UBERON:0001890!7.11e-17!39;UBERON:0006240!7.11e-17!39;UBERON:0003080!1.80e-16!40;UBERON:0002020!1.02e-15!34;UBERON:0007811!3.20e-14!86;UBERON:0000153!7.29e-14!94;UBERON:0002791!1.76e-13!29;UBERON:0003528!1.76e-13!29;UBERON:0001893!1.76e-13!29;UBERON:0000956!1.24e-10!21;UBERON:0001869!1.24e-10!21;UBERON:0000203!1.24e-10!21;UBERON:0002619!1.46e-08!17;UBERON:0000479!3.78e-07!349 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.22e-28,73;UBERON:0001016,9.13e-27,75;UBERON:0004121,6.05e-26,95;UBERON:0000924,6.05e-26,95;UBERON:0006601,6.05e-26,95;UBERON:0002346,1.00e-24,64;UBERON:0003075,1.00e-24,64;UBERON:0007284,1.00e-24,64;UBERON:0000073,1.50e-20,54;UBERON:0010371,2.23e-20,73;UBERON:0001049,6.05e-20,52;UBERON:0005068,6.05e-20,52;UBERON:0006241,6.05e-20,52;UBERON:0007135,6.05e-20,52;UBERON:0003056,7.13e-20,49;UBERON:0010314,3.36e-19,92;UBERON:0000955,3.72e-18,47;UBERON:0006238,3.72e-18,47;UBERON:0002616,8.13e-18,46;UBERON:0002780,7.11e-17,39;UBERON:0001890,7.11e-17,39;UBERON:0006240,7.11e-17,39;UBERON:0003080,1.80e-16,40;UBERON:0002020,1.02e-15,34;UBERON:0003528,1.76e-13,29;UBERON:0002791,1.76e-13,29;UBERON:0001893,1.76e-13,29;UBERON:0000956,1.24e-10,21;UBERON:0001869,1.24e-10,21;UBERON:0000203,1.24e-10,21;UBERON:0000922,8.33e-09,320;UBERON:0002619,1.46e-08,17;UBERON:0000479,3.78e-07,349 | |||
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| |||
|short_description=p1@Tada3 | |||
}} |
Revision as of 08:32, 14 September 2013
Short description: | p1@Tada3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tada3_5end |
Coexpression cluster: | MCL_coexpression_mm9:735 |
Association with transcript: | 27bp_to_ENSMUST00000032410_5end |
EntrezGene: | Tada3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.25e-16 | 43 |
ectodermal cell | 8.65e-16 | 44 |
neurectodermal cell | 8.65e-16 | 44 |
neuron | 3.75e-13 | 33 |
neuronal stem cell | 3.75e-13 | 33 |
neuroblast | 3.75e-13 | 33 |
electrically signaling cell | 3.75e-13 | 33 |
CNS neuron (sensu Vertebrata) | 5.90e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.90e-11 | 23 |
electrically responsive cell | 1.50e-08 | 39 |
electrically active cell | 1.50e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.22e-28 | 73 |
nervous system | 9.13e-27 | 75 |
ectoderm-derived structure | 6.05e-26 | 95 |
ectoderm | 6.05e-26 | 95 |
presumptive ectoderm | 6.05e-26 | 95 |
neurectoderm | 1.00e-24 | 64 |
neural plate | 1.00e-24 | 64 |
presumptive neural plate | 1.00e-24 | 64 |
regional part of nervous system | 1.50e-20 | 54 |
ecto-epithelium | 2.23e-20 | 73 |
neural tube | 6.05e-20 | 52 |
neural rod | 6.05e-20 | 52 |
future spinal cord | 6.05e-20 | 52 |
neural keel | 6.05e-20 | 52 |
pre-chordal neural plate | 7.13e-20 | 49 |
structure with developmental contribution from neural crest | 3.36e-19 | 92 |
brain | 3.72e-18 | 47 |
future brain | 3.72e-18 | 47 |
regional part of brain | 8.13e-18 | 46 |
regional part of forebrain | 7.11e-17 | 39 |
forebrain | 7.11e-17 | 39 |
future forebrain | 7.11e-17 | 39 |
anterior neural tube | 1.80e-16 | 40 |
gray matter | 1.02e-15 | 34 |
brain grey matter | 1.76e-13 | 29 |
regional part of telencephalon | 1.76e-13 | 29 |
telencephalon | 1.76e-13 | 29 |
cerebral cortex | 1.24e-10 | 21 |
cerebral hemisphere | 1.24e-10 | 21 |
pallium | 1.24e-10 | 21 |
embryo | 8.33e-09 | 320 |
regional part of cerebral cortex | 1.46e-08 | 17 |
tissue | 3.78e-07 | 349 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.