FFCP PHASE1:Mm9::chr5:37637062..37637122,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12933|HGNC=|MCL_coexpression_id=22|UniProt=P97427|association_with_transcript=31bp_to_ENSMUST00000031004,NM_007765,uc008xfm.1_5end|description=CAGE_peak_1_at_Crmp1_5end|id=chr5:37637062..37637122,+|ontology_enrichment_celltype=CL:0000540!4.14e-15!33;CL:0000047!4.14e-15!33;CL:0000031!4.14e-15!33;CL:0000404!4.14e-15!33;CL:0002319!3.04e-14!43;CL:0000221!3.13e-14!44;CL:0000133!3.13e-14!44;CL:0000117!1.55e-13!23;CL:0000337!1.55e-13!23;CL:0000393!1.04e-10!39;CL:0000211!1.04e-10!39;CL:0000055!6.70e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,9.74e-16,33;CL:0000047,9.74e-16,33;CL:0000031,9.74e-16,33;CL:0000404,9.74e-16,33;CL:0002319,7.85e-15,43;CL:0000221,8.07e-15,44;CL:0000133,8.07e-15,44;CL:0000117,4.32e-14,23;CL:0000337,4.32e-14,23;CL:0000393,2.74e-11,39;CL:0000211,2.74e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.57e-28!73;UBERON:0005743!6.57e-28!73;UBERON:0000073!1.05e-27!75;UBERON:0001016!1.05e-27!75;UBERON:0002346!4.35e-26!71;UBERON:0003075!4.35e-26!71;UBERON:0007284!4.35e-26!71;UBERON:0004121!2.11e-25!102;UBERON:0000924!2.11e-25!102;UBERON:0006601!2.11e-25!102;UBERON:0001049!1.60e-21!52;UBERON:0005068!1.60e-21!52;UBERON:0006241!1.60e-21!52;UBERON:0007135!1.60e-21!52;UBERON:0000033!2.88e-21!63;UBERON:0003056!8.83e-20!49;UBERON:0000955!1.47e-19!50;UBERON:0006238!1.47e-19!50;UBERON:0002616!5.89e-19!49;UBERON:0002020!2.54e-17!34;UBERON:0003080!1.19e-16!40;UBERON:0002780!2.06e-16!39;UBERON:0001890!2.06e-16!39;UBERON:0006240!2.06e-16!39;UBERON:0007811!3.37e-14!86;UBERON:0002791!3.67e-14!29;UBERON:0003528!3.67e-14!29;UBERON:0001893!3.67e-14!29;UBERON:0000153!1.26e-13!94;UBERON:0000956!2.86e-10!21;UBERON:0001869!2.86e-10!21;UBERON:0000203!2.86e-10!21;UBERON:0002619!5.69e-08!17;UBERON:0000468!8.14e-08!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.89e-29,73;UBERON:0001016,6.37e-29,75;UBERON:0002346,7.44e-27,64;UBERON:0003075,7.44e-27,64;UBERON:0007284,7.44e-27,64;UBERON:0004121,8.27e-25,95;UBERON:0000924,8.27e-25,95;UBERON:0006601,8.27e-25,95;UBERON:0000073,3.37e-23,54;UBERON:0001049,1.88e-22,52;UBERON:0005068,1.88e-22,52;UBERON:0006241,1.88e-22,52;UBERON:0007135,1.88e-22,52;UBERON:0010371,4.40e-21,73;UBERON:0010314,7.91e-21,92;UBERON:0003056,1.26e-20,49;UBERON:0000955,1.47e-19,47;UBERON:0006238,1.47e-19,47;UBERON:0002616,6.20e-19,46;UBERON:0002020,4.70e-18,34;UBERON:0003080,2.38e-17,40;UBERON:0002780,4.21e-17,39;UBERON:0001890,4.21e-17,39;UBERON:0006240,4.21e-17,39;UBERON:0003528,9.54e-15,29;UBERON:0002791,9.54e-15,29;UBERON:0001893,9.54e-15,29;UBERON:0000956,1.13e-10,21;UBERON:0001869,1.13e-10,21;UBERON:0000203,1.13e-10,21;UBERON:0002619,2.86e-08,17|phase1_expression=12.6517589212787,0,0,0,0,0.671517087647559,2.33612640595526,6.58528949552039,0.563154888606667,0,0.171217968225505,0.159544317990673,2.22560948910567,4.19617931611188,0,0.404950534779652,0,0.157731082679119,0.274228867211478,0,6.4632900514813,0,0,0.47997726838022,0.22940928106717,0,0,0.215471232685889,0.380046838912748,0.504060259519861,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.38869613217647,20.0583143870011,2.41654801007919,2.13872888981712,5.87942970826523,11.5002051491977,0,6.5282592781021,0,1.80081605225163,0.85960031981627,2.06268836910977,420.008972744525,408.910026977281,493.754663331314,41.000188380365,11.5608323494448,0.449949858640699,0,0,9.28760342607055,15.3687322128622,334.813758144074,385.441953936977,367.017057558162,158.250645359707,150.411476388049,393.685428676862,405.42634240714,482.589862970261,29.731287869835,34.0925192687451,40.398518246392,486.924174299876,475.369796158121,425.586223744873,32.6644108831616,36.0168070420275,40.4915356608547,192.097837728831,172.98159217091,321.539044048644,3.48340489332647,7.48158445057177,0.289864488701678,0,0,0.539703191637817,0,0,1.54488862144927,0,0,0,7.32385782838739,0,2.54805239706646,0,0,0,0,1.48439043634778,4.91981978929626,4.15637989381509,24.9818870543236,26.4884966131563,15.912469310668,20.1968338340514,15.1689432205059,2.51333182659351,0,0.289198713839823,0,1.13236794963186,0,0,0,55.9211322292055,67.8607330075594,0.766371165625774,0,0,0,35.500381538943,45.7500602818627,484.774490451431,50.0614042153756,65.9745879912253,36.362907797923,42.3449696606847,2.03678727700633,0.248813941220186,0,6.52369753248069,13.2722851821958,38.1637493359565,51.1376448647192,50.9382284284717,66.6757691683013,53.9358762399218,62.5927520058989,19.6614561761652,17.0298714416945,5.67318240503458,4.22282697993477,5.04150184583422,3.05851974148158,1.39300866608867,0.205782136407943,5.7719937377363,0,0,0,8.90640821902658,5.62862543954631,5.04173772090842,6.62885259638589,5.50939848892731,2.77680803197281,4.65067889500816,2.95100741539581,2.56883753207773,3.62031669809657,1.64167464079095,0.891756905004413,0.146199987425332,0.658650345873152,0.402619256281115,33.2258118731321,383.422585725214,1.32167513193519,0.793351699990633,20.2623838008472,18.5789337488351,12.371276286921,9.68080918192044,6.89371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| ||
|EntrezGene=12933 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=P97427 | |||
|association_with_transcript=31bp_to_ENSMUST00000031004,NM_007765,uc008xfm.1_5end | |||
|description=CAGE_peak_1_at_Crmp1_5end | |||
|id=chr5:37637062..37637122,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.14e-15!33;CL:0000047!4.14e-15!33;CL:0000031!4.14e-15!33;CL:0000404!4.14e-15!33;CL:0002319!3.04e-14!43;CL:0000221!3.13e-14!44;CL:0000133!3.13e-14!44;CL:0000117!1.55e-13!23;CL:0000337!1.55e-13!23;CL:0000393!1.04e-10!39;CL:0000211!1.04e-10!39;CL:0000055!6.70e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,9.74e-16,33;CL:0000047,9.74e-16,33;CL:0000031,9.74e-16,33;CL:0000404,9.74e-16,33;CL:0002319,7.85e-15,43;CL:0000221,8.07e-15,44;CL:0000133,8.07e-15,44;CL:0000117,4.32e-14,23;CL:0000337,4.32e-14,23;CL:0000393,2.74e-11,39;CL:0000211,2.74e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.57e-28!73;UBERON:0005743!6.57e-28!73;UBERON:0000073!1.05e-27!75;UBERON:0001016!1.05e-27!75;UBERON:0002346!4.35e-26!71;UBERON:0003075!4.35e-26!71;UBERON:0007284!4.35e-26!71;UBERON:0004121!2.11e-25!102;UBERON:0000924!2.11e-25!102;UBERON:0006601!2.11e-25!102;UBERON:0001049!1.60e-21!52;UBERON:0005068!1.60e-21!52;UBERON:0006241!1.60e-21!52;UBERON:0007135!1.60e-21!52;UBERON:0000033!2.88e-21!63;UBERON:0003056!8.83e-20!49;UBERON:0000955!1.47e-19!50;UBERON:0006238!1.47e-19!50;UBERON:0002616!5.89e-19!49;UBERON:0002020!2.54e-17!34;UBERON:0003080!1.19e-16!40;UBERON:0002780!2.06e-16!39;UBERON:0001890!2.06e-16!39;UBERON:0006240!2.06e-16!39;UBERON:0007811!3.37e-14!86;UBERON:0002791!3.67e-14!29;UBERON:0003528!3.67e-14!29;UBERON:0001893!3.67e-14!29;UBERON:0000153!1.26e-13!94;UBERON:0000956!2.86e-10!21;UBERON:0001869!2.86e-10!21;UBERON:0000203!2.86e-10!21;UBERON:0002619!5.69e-08!17;UBERON:0000468!8.14e-08!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.89e-29,73;UBERON:0001016,6.37e-29,75;UBERON:0002346,7.44e-27,64;UBERON:0003075,7.44e-27,64;UBERON:0007284,7.44e-27,64;UBERON:0004121,8.27e-25,95;UBERON:0000924,8.27e-25,95;UBERON:0006601,8.27e-25,95;UBERON:0000073,3.37e-23,54;UBERON:0001049,1.88e-22,52;UBERON:0005068,1.88e-22,52;UBERON:0006241,1.88e-22,52;UBERON:0007135,1.88e-22,52;UBERON:0010371,4.40e-21,73;UBERON:0010314,7.91e-21,92;UBERON:0003056,1.26e-20,49;UBERON:0000955,1.47e-19,47;UBERON:0006238,1.47e-19,47;UBERON:0002616,6.20e-19,46;UBERON:0002020,4.70e-18,34;UBERON:0003080,2.38e-17,40;UBERON:0002780,4.21e-17,39;UBERON:0001890,4.21e-17,39;UBERON:0006240,4.21e-17,39;UBERON:0003528,9.54e-15,29;UBERON:0002791,9.54e-15,29;UBERON:0001893,9.54e-15,29;UBERON:0000956,1.13e-10,21;UBERON:0001869,1.13e-10,21;UBERON:0000203,1.13e-10,21;UBERON:0002619,2.86e-08,17 | |||
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| |||
|short_description=p1@Crmp1 | |||
}} |
Revision as of 07:36, 14 September 2013
Short description: | p1@Crmp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Crmp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 31bp_to_ENSMUST00000031004, NM_007765, uc008xfm.1_5end |
EntrezGene: | Crmp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 9.74e-16 | 33 |
neuronal stem cell | 9.74e-16 | 33 |
neuroblast | 9.74e-16 | 33 |
electrically signaling cell | 9.74e-16 | 33 |
neural cell | 7.85e-15 | 43 |
ectodermal cell | 8.07e-15 | 44 |
neurectodermal cell | 8.07e-15 | 44 |
CNS neuron (sensu Vertebrata) | 4.32e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.32e-14 | 23 |
electrically responsive cell | 2.74e-11 | 39 |
electrically active cell | 2.74e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.89e-29 | 73 |
nervous system | 6.37e-29 | 75 |
neurectoderm | 7.44e-27 | 64 |
neural plate | 7.44e-27 | 64 |
presumptive neural plate | 7.44e-27 | 64 |
ectoderm-derived structure | 8.27e-25 | 95 |
ectoderm | 8.27e-25 | 95 |
presumptive ectoderm | 8.27e-25 | 95 |
regional part of nervous system | 3.37e-23 | 54 |
neural tube | 1.88e-22 | 52 |
neural rod | 1.88e-22 | 52 |
future spinal cord | 1.88e-22 | 52 |
neural keel | 1.88e-22 | 52 |
ecto-epithelium | 4.40e-21 | 73 |
structure with developmental contribution from neural crest | 7.91e-21 | 92 |
pre-chordal neural plate | 1.26e-20 | 49 |
brain | 1.47e-19 | 47 |
future brain | 1.47e-19 | 47 |
regional part of brain | 6.20e-19 | 46 |
gray matter | 4.70e-18 | 34 |
anterior neural tube | 2.38e-17 | 40 |
regional part of forebrain | 4.21e-17 | 39 |
forebrain | 4.21e-17 | 39 |
future forebrain | 4.21e-17 | 39 |
brain grey matter | 9.54e-15 | 29 |
regional part of telencephalon | 9.54e-15 | 29 |
telencephalon | 9.54e-15 | 29 |
cerebral cortex | 1.13e-10 | 21 |
cerebral hemisphere | 1.13e-10 | 21 |
pallium | 1.13e-10 | 21 |
regional part of cerebral cortex | 2.86e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.