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FFCP PHASE1:Mm9::chr5:15440580..15440605,+: Difference between revisions

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{{FFCP
{{FFCP|EntrezGene=12293|HGNC=|MCL_coexpression_id=1167|UniProt=O08532|association_with_transcript=-41bp_to_ENSMUST00000115281_5end|description=CAGE_peak_3_at_Cacna2d1_5end|id=chr5:15440580..15440605,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!9.52e-18!71;UBERON:0003075!9.52e-18!71;UBERON:0007284!9.52e-18!71;UBERON:0004121!1.82e-15!102;UBERON:0000924!1.82e-15!102;UBERON:0006601!1.82e-15!102;UBERON:0001017!2.81e-15!73;UBERON:0005743!2.81e-15!73;UBERON:0000073!9.86e-15!75;UBERON:0001016!9.86e-15!75;UBERON:0001049!1.21e-14!52;UBERON:0005068!1.21e-14!52;UBERON:0006241!1.21e-14!52;UBERON:0007135!1.21e-14!52;UBERON:0000955!3.01e-14!50;UBERON:0006238!3.01e-14!50;UBERON:0000033!1.15e-13!63;UBERON:0002616!1.28e-13!49;UBERON:0003056!2.89e-12!49;UBERON:0003080!5.49e-12!40;UBERON:0002780!1.72e-11!39;UBERON:0001890!1.72e-11!39;UBERON:0006240!1.72e-11!39;UBERON:0002020!6.54e-11!34;UBERON:0002791!8.02e-09!29;UBERON:0003528!8.02e-09!29;UBERON:0001893!8.02e-09!29;UBERON:0000468!9.42e-09!333;UBERON:0000025!1.83e-08!114;UBERON:0002021!4.89e-08!10;UBERON:0000411!4.89e-08!10;UBERON:0001950!4.89e-08!10;UBERON:0004111!5.28e-08!122;UBERON:0000956!3.44e-07!21;UBERON:0001869!3.44e-07!21;UBERON:0000203!3.44e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0010314,9.76e-24,92;UBERON:0000073,4.77e-16,54;UBERON:0002346,1.21e-15,64;UBERON:0003075,1.21e-15,64;UBERON:0007284,1.21e-15,64;UBERON:0001017,2.39e-15,73;UBERON:0001049,8.59e-15,52;UBERON:0005068,8.59e-15,52;UBERON:0006241,8.59e-15,52;UBERON:0007135,8.59e-15,52;UBERON:0001016,1.58e-14,75;UBERON:0010371,6.02e-13,73;UBERON:0004121,9.01e-13,95;UBERON:0000924,9.01e-13,95;UBERON:0006601,9.01e-13,95;UBERON:0000955,9.69e-13,47;UBERON:0006238,9.69e-13,47;UBERON:0003056,2.24e-12,49;UBERON:0002616,4.12e-12,46;UBERON:0003080,4.72e-12,40;UBERON:0002780,1.54e-11,39;UBERON:0001890,1.54e-11,39;UBERON:0006240,1.54e-11,39;UBERON:0002020,6.45e-11,34;UBERON:0003528,9.43e-09,29;UBERON:0002791,9.43e-09,29;UBERON:0001893,9.43e-09,29;UBERON:0002021,2.39e-08,10;UBERON:0000411,2.39e-08,10;UBERON:0001950,2.39e-08,10;UBERON:0000025,4.52e-08,114;UBERON:0004111,2.56e-07,122;UBERON:0000956,4.95e-07,21;UBERON:0001869,4.95e-07,21;UBERON:0000203,4.95e-07,21|phase1_expression=1.60148847104794,0,0,0,0,0.33575854382378,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,4.93251082876205,0,0,0.159992422793407,0.91763712426868,0.57423196411502,0,0.215471232685889,0.380046838912748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51076181570693,1.11514624341466,0.734187008646726,0,0.436050312760893,0.659058548203415,0.388859798148567,0.419959264876088,0,0,0,0,4.11615097657515,2.0057340795713,4.64104883049698,3.64169629547276,1.5869729378161,6.33831403506179,0.338844532069132,0,0.899899717281399,0,0,0.898800331555214,0,5.28817022773236,3.24014251996058,4.6271491497304,7.42692559449889,5.74258206474195,2.57230678351403,1.62937300731002,1.83843757322004,8.8092704799511,12.5133591323484,12.7493422602682,4.48413378282659,3.01909223887952,3.64639359389732,4.18774498502071,14.6318278608237,11.4598685832608,10.3120004915784,7.68807076315156,8.57437450796383,0.908714319998209,1.66257432234928,1.73918693221007,0,0,0,0,0,5.47733238513832,1.53387290320252,1.81850203222008,0.35333957451034,0.845060518660083,0,2.54805239706646,0,0.432982082022428,0,0,1.1418387971906,0.517875767294343,11.7269289861212,2.60227990149204,3.95805121805784,6.22661842591358,5.72746034099966,11.8764594207062,6.6603293404728,0,2.31358971071859,5.30766331169925,12.1325137460557,14.1338571814652,11.6370060752453,0,7.90508151931177,11.3101221679266,1.53274233125155,0,0,0,10.0359728401231,8.23501085073528,2.63874139437015,22.4233373048037,25.8272611903634,7.89594569326328,13.7905073607594,2.54598409625791,4.97627882440372,3.0326731012041,3.36706969418358,1.30120442962704,3.21862946206862,1.80062129805349,3.61691562805716,4.62648194229029,4.61209393025459,4.8724896771059,5.17406741478031,1.72454394346274,2.83659120251729,2.28736461413134,1.7535658594206,3.05851974148158,3.83077383174383,3.70407845534298,2.58744546864041,0,0,0,3.52113813310353,4.22146907965973,4.32148947506436,4.26140524053378,5.70616272067471,4.16521204795921,5.8133486187602,6.70683503499048,6.889155199663,5.43047504714485,6.895033491322,10.7821516695988,13.1579988682799,13.6121071480451,13.2864354572768,21.2392848049769,6.79170441703277,0,0.528901133327089,2.34617075588757,2.78684006232526,3.60828891701861,1.21010114774006,4.22518283305254,1.14135375667535,0,1.97638745668813,1.75934646160189,2.98434708061726,1.55971269695296,3.59527763461689,1.51296634912286,0.597423819763102,1.13800740571849,3.77020091612105,2.25415471346161,2.8511185898344,2.32742984601151,3.0158402552837,1.07502113111237,0.295220295959204,0.31399745568275,0.987177311374404,0.296452627087149,0.166845105716094,0.196558995113203,0.224862112384854,0.405720242777006,0,0,0,0.162135226775035,0.549122826376163,1.43768206527355,0.7442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|EntrezGene=12293
|HGNC=
|MCL_coexpression_id=1167
|UniProt=O08532
|association_with_transcript=-41bp_to_ENSMUST00000115281_5end
|description=CAGE_peak_3_at_Cacna2d1_5end
|id=chr5:15440580..15440605,+
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002346!9.52e-18!71;UBERON:0003075!9.52e-18!71;UBERON:0007284!9.52e-18!71;UBERON:0004121!1.82e-15!102;UBERON:0000924!1.82e-15!102;UBERON:0006601!1.82e-15!102;UBERON:0001017!2.81e-15!73;UBERON:0005743!2.81e-15!73;UBERON:0000073!9.86e-15!75;UBERON:0001016!9.86e-15!75;UBERON:0001049!1.21e-14!52;UBERON:0005068!1.21e-14!52;UBERON:0006241!1.21e-14!52;UBERON:0007135!1.21e-14!52;UBERON:0000955!3.01e-14!50;UBERON:0006238!3.01e-14!50;UBERON:0000033!1.15e-13!63;UBERON:0002616!1.28e-13!49;UBERON:0003056!2.89e-12!49;UBERON:0003080!5.49e-12!40;UBERON:0002780!1.72e-11!39;UBERON:0001890!1.72e-11!39;UBERON:0006240!1.72e-11!39;UBERON:0002020!6.54e-11!34;UBERON:0002791!8.02e-09!29;UBERON:0003528!8.02e-09!29;UBERON:0001893!8.02e-09!29;UBERON:0000468!9.42e-09!333;UBERON:0000025!1.83e-08!114;UBERON:0002021!4.89e-08!10;UBERON:0000411!4.89e-08!10;UBERON:0001950!4.89e-08!10;UBERON:0004111!5.28e-08!122;UBERON:0000956!3.44e-07!21;UBERON:0001869!3.44e-07!21;UBERON:0000203!3.44e-07!21
|ontology_enrichment_uberon_v019_2=UBERON:0010314,9.76e-24,92;UBERON:0000073,4.77e-16,54;UBERON:0002346,1.21e-15,64;UBERON:0003075,1.21e-15,64;UBERON:0007284,1.21e-15,64;UBERON:0001017,2.39e-15,73;UBERON:0001049,8.59e-15,52;UBERON:0005068,8.59e-15,52;UBERON:0006241,8.59e-15,52;UBERON:0007135,8.59e-15,52;UBERON:0001016,1.58e-14,75;UBERON:0010371,6.02e-13,73;UBERON:0004121,9.01e-13,95;UBERON:0000924,9.01e-13,95;UBERON:0006601,9.01e-13,95;UBERON:0000955,9.69e-13,47;UBERON:0006238,9.69e-13,47;UBERON:0003056,2.24e-12,49;UBERON:0002616,4.12e-12,46;UBERON:0003080,4.72e-12,40;UBERON:0002780,1.54e-11,39;UBERON:0001890,1.54e-11,39;UBERON:0006240,1.54e-11,39;UBERON:0002020,6.45e-11,34;UBERON:0003528,9.43e-09,29;UBERON:0002791,9.43e-09,29;UBERON:0001893,9.43e-09,29;UBERON:0002021,2.39e-08,10;UBERON:0000411,2.39e-08,10;UBERON:0001950,2.39e-08,10;UBERON:0000025,4.52e-08,114;UBERON:0004111,2.56e-07,122;UBERON:0000956,4.95e-07,21;UBERON:0001869,4.95e-07,21;UBERON:0000203,4.95e-07,21
|phase1_expression=1.60148847104794,0,0,0,0,0.33575854382378,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,4.93251082876205,0,0,0.159992422793407,0.91763712426868,0.57423196411502,0,0.215471232685889,0.380046838912748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51076181570693,1.11514624341466,0.734187008646726,0,0.436050312760893,0.659058548203415,0.388859798148567,0.419959264876088,0,0,0,0,4.11615097657515,2.0057340795713,4.64104883049698,3.64169629547276,1.5869729378161,6.33831403506179,0.338844532069132,0,0.899899717281399,0,0,0.898800331555214,0,5.28817022773236,3.24014251996058,4.6271491497304,7.42692559449889,5.74258206474195,2.57230678351403,1.62937300731002,1.83843757322004,8.8092704799511,12.5133591323484,12.7493422602682,4.48413378282659,3.01909223887952,3.64639359389732,4.18774498502071,14.6318278608237,11.4598685832608,10.3120004915784,7.68807076315156,8.57437450796383,0.908714319998209,1.66257432234928,1.73918693221007,0,0,0,0,0,5.47733238513832,1.53387290320252,1.81850203222008,0.35333957451034,0.845060518660083,0,2.54805239706646,0,0.432982082022428,0,0,1.1418387971906,0.517875767294343,11.7269289861212,2.60227990149204,3.95805121805784,6.22661842591358,5.72746034099966,11.8764594207062,6.6603293404728,0,2.31358971071859,5.30766331169925,12.1325137460557,14.1338571814652,11.6370060752453,0,7.90508151931177,11.3101221679266,1.53274233125155,0,0,0,10.0359728401231,8.23501085073528,2.63874139437015,22.4233373048037,25.8272611903634,7.89594569326328,13.7905073607594,2.54598409625791,4.97627882440372,3.0326731012041,3.36706969418358,1.30120442962704,3.21862946206862,1.80062129805349,3.61691562805716,4.62648194229029,4.61209393025459,4.8724896771059,5.17406741478031,1.72454394346274,2.83659120251729,2.28736461413134,1.7535658594206,3.05851974148158,3.83077383174383,3.70407845534298,2.58744546864041,0,0,0,3.52113813310353,4.22146907965973,4.32148947506436,4.26140524053378,5.70616272067471,4.16521204795921,5.8133486187602,6.70683503499048,6.889155199663,5.43047504714485,6.895033491322,10.7821516695988,13.1579988682799,13.6121071480451,13.2864354572768,21.2392848049769,6.79170441703277,0,0.528901133327089,2.34617075588757,2.78684006232526,3.60828891701861,1.21010114774006,4.22518283305254,1.14135375667535,0,1.97638745668813,1.75934646160189,2.98434708061726,1.55971269695296,3.59527763461689,1.51296634912286,0.597423819763102,1.13800740571849,3.77020091612105,2.25415471346161,2.8511185898344,2.32742984601151,3.0158402552837,1.07502113111237,0.295220295959204,0.31399745568275,0.987177311374404,0.296452627087149,0.166845105716094,0.196558995113203,0.224862112384854,0.405720242777006,0,0,0,0.162135226775035,0.549122826376163,1.43768206527355,0.744281895337007,0.624075346229121,0.505157755894224,1.4351793081753,0,2.58654466233247,1.70542270593436,2.11854469374634,1.18821560042632,1.17345124144251,1.00503754465089,1.6663054862021,1.95133647857799,2.99506773801763,2.87904096543407,4.14582398509466,0.983179888294428,1.72684981865896,1.88043776155965,0,0,0.491764273019036,0,5.13761887960934,6.09500770279457,0.655739781506702,49.4843017320571,2.52406575533005,3.90438744296638,5.81643173878557,1.91175038362042,2.22798674082394,2.83076530788832,2.83367491172426,7.01414058987149,8.69633111482352,23.7777774152137,4.11626247103979,2.13678724400706,2.60619134965722,3.95928295134085,0,2.18502572539483,1.209294227859,0.943025398779491,1.18120757152309,2.15204603560749,2.84271122485043,3.63533729477506,2.49548164869305,1.26414703174326,0,0,15.6602218646742,2.88097750450096,1.16422815404479,4.71541477069503,8.51233121482913,6.42127743367454,6.08831376227848,5.48036908406279,0.23467170806371,0.21183207086382,0.882113592219848,4.61681508236144,2.09903754704677,2.23157822234177,2.98430860007841,0.984845398470368,1.1659233465194,6.67531087237835,0,1.44470807574256,0.370389054739423,0.565105371014073,0.27338845544205,0.228778173206523,0,0,0,0.954670618015114,2.21435195506795,2.03319467126849,2.48412283890143,1.88179466413022,1.31017538247707,2.15782954215713,2.72756403893609,2.35580347785627,1.29614973291793,0,0,1.19613236835183,1.98550188548517,0.972255941720238,1.80823752868824,2.53434188236167,4.45957506853865,3.6457227756306,2.09718688851422,0.483168241652012,5.18454011264158,0.632022241256357,0.405450430580328,0.308132871494482,0,0,0,0,0.147689527174577,0.100966449948148,0,0.201652370273681,0.194915761479505,0,0.116876902181569,8.38902419376282,0.443971906748129,0.269141569828427,0.671538465456314,5.79568782096571,2.43987218086537,2.74727436400898,0.428736758158132,2.00628841614145,19.7663144915973,21.1749608793301,20.6242384838183,19.7631159695241,29.4585483501376,21.9064230243013,26.3258775090404,26.568950990229,22.203978040226,25.3702552758392,0.726511433089237,4.38927360741134,2.56100408631201,3.40349403895612,0.838452650511929,0.183843508450014,7.55638874525492,5.76898160268904,7.06022261101994,5.81203587056734,5.0695859978048,6.22466926574051,5.24392441831341,5.6342134116285,6.43277252302869,6.19181798667996,5.79421629724277,6.17309505483856,8.24171801606613,6.47675248591348,4.80016953339582,5.50174999093946,5.7224685587357,3.92435324907287,5.74067220533517,5.16149108139227,6.21955107767427,4.73525480588117,6.79020569229309,6.17256498823512,6.52492599682958,5.31924204828043,5.72923460437565,6.50734732981057,5.40138510747196,4.24677982494508,5.38042699424439,6.44613162144895,9.75570493551101,9.70602244125868,13.216466630364
|short_description=p3@Cacna2d1
}}

Revision as of 07:10, 14 September 2013

Short description:p3@Cacna2d1
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_3_at_Cacna2d1_5end
Coexpression cluster:MCL_coexpression_mm9:1167
Association with transcript: -41bp_to_ENSMUST00000115281_5end
EntrezGene:Cacna2d1
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p3@Cacna2d1

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G71.60
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.34
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.47
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A34.93
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.16
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.92
GP2+ M cell, pool1.CNhs13228.11845-124H90.57
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.22
Ileum epithelium, pool1.CNhs13199.10252-104B90.38
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D81.51
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D91.12
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.73
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.44
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.66
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.39
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.42
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C14.12
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E12.01
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C54.64
Mouse Granule cells, donor1.CNhs12131.11713-123C33.64
Mouse Granule cells, donor2.CNhs12357.11731-123E31.59
Mouse Granule cells, donor3.CNhs12108.11636-122C76.34
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.34
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.90
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.90
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D55.29
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F53.24
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D94.63
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F17.43
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D55.74
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D22.57
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F21.63
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D61.84
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D38.81
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F312.51
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D712.75
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D44.48
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F43.02
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D83.65
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E44.19
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E514.63
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I611.46
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D610.31
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F67.69
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E18.57
Mouse Schwann, donor1.CNhs12507.11728-123D90.91
Mouse Schwann, donor2.CNhs12573.11746-123F91.66
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G31.74
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A75.48
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I71.53
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E31.82
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.35
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.85
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I82.55
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.43
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B61.14
accessory axillary lymph node, adult.CNhs10475.1063-29H90.52
adrenal gland, adult.CNhs10508.49-24D711.73
adrenal gland, embryo E14.CNhs11038.406-44C52.60
adrenal gland, embryo E16.CNhs11004.1254-43D63.96
adrenal gland, embryo E17.CNhs11043.1263-45I16.23
adrenal gland, embryo E18.CNhs11026.1262-18F55.73
adrenal gland, neonate N00.CNhs11191.1311-23C111.88
adrenal gland, neonate N25.CNhs11223.1377-27I36.66
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H12.31
bone (os femoris), adult.CNhs10483.56-12G25.31
bone (os femoris), neonate N02.CNhs11227.1985-43F512.13
bone (os femoris), neonate N16.CNhs11225.1525-43A614.13
bone (os femoris), neonate N20.CNhs11195.1350-25C311.64
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B27.91
cerebellum, neonate N30.CNhs11135.1395-42I211.31
colon, adult.CNhs10468.36-18H71.53
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A410.04
corpus striatum, adult.CNhs10487.19-21D88.24
corpus striatum, neonate N00.CNhs11226.630-43F12.64
cortex, adult.CNhs10473.12-14D522.42
cortex, neonate N30.CNhs11107.1392-42F225.83
diencephalon, adult.CNhs10482.20-12F27.90
diencephalon, neonate N30.CNhs11201.1388-42B213.79
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B12.55
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A24.98
epididymis, adult.CNhs10490.58-23B23.03
eyeball, adult.CNhs10484.31-12G43.37
eyeball, embryo E12.CNhs11016.345-16C61.30
eyeball, embryo E14.CNhs10521.399-16E23.22
eyeball, embryo E15.CNhs10593.426-16C91.80
eyeball, embryo E17.CNhs11023.1261-18D43.62
eyeball, neonate N00.CNhs11207.633-15C64.63
eyeball, neonate N01.CNhs11140.1532-43E74.61
eyeball, neonate N02.CNhs11205.1551-44G84.87
eyeball, neonate N16.CNhs11188.777-19A25.17
forelimb, embryo E11.CNhs10596.335-25E21.72
forelimb, embryo E12.CNhs10600.359-14H22.84
forelimb, embryo E13.CNhs10589.384-1E22.29
forelimb, embryo E14.CNhs10577.413-26A81.75
forelimb, embryo E15.CNhs11007.437-20E73.06
forelimb, embryo E17.CNhs10598.1517-43C43.83
forelimb, embryo E18.CNhs11008.1520-43B53.70
gonad, embryo E13.CNhs11044.1564-45I62.59
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E93.52
heart, embryo E12.CNhs11015.353-12F54.22
heart, embryo E13.CNhs11013.376-3I94.32
heart, embryo E14.CNhs10597.403-26D44.26
heart, embryo E15.CNhs11017.431-16C85.71
heart, embryo E16.CNhs11021.457-17C64.17
heart, embryo E17.CNhs11025.479-18E55.81
heart, embryo E18.CNhs11030.1283-20G36.71
heart, neonate N00.CNhs11213.639-21E36.89
heart, neonate N03.CNhs11221.1349-25I25.43
heart, neonate N10.CNhs11118.749-24G16.90
heart, neonate N16.CNhs11209.782-15G110.78
heart, neonate N20.CNhs11127.821-26I613.16
heart, neonate N25.CNhs11196.1351-25D313.61
heart, neonate N30.CNhs11202.1390-42D213.29
hippocampus, adult.CNhs10478.13-16E821.24
hippocampus, neonate N00.CNhs11228.627-43G16.79
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.53
intestine, embryo E12.CNhs11019.1251-16I52.35
intestine, embryo E13.CNhs11010.381-16D52.79
intestine, embryo E15.CNhs10602.976-16D83.61
intestine, embryo E16.CNhs10585.463-22H41.21
intestine, embryo E17.CNhs10582.482-18D34.23
intestine, embryo E18.CNhs10526.1289-20F71.14
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E91.98
intestine, neonate N06.CNhs11102.688-20B81.76
intestine, neonate N07.CNhs11095.720-20F22.98
intestine, neonate N10.CNhs11098.755-23A51.56
intestine, neonate N20.CNhs11187.827-18D13.60
intestine, neonate N25.CNhs11121.1352-25E31.51
intestine, neonate N30.CNhs11131.1384-42G10.60
kidney, embryo E14.CNhs10606.411-4I91.14
kidney, embryo E15.CNhs10997.434-16F83.77
kidney, embryo E16.CNhs10584.464-22A52.25
kidney, embryo E17.CNhs11028.483-18I22.85
kidney, embryo E18.CNhs11001.1288-20C72.33
kidney, neonate N00.CNhs11214.646-21G73.02
kidney, neonate N10.CNhs11206.758-6D51.08
kidney, neonate N20.CNhs11113.832-19I10.30
kidney, neonate N25.CNhs11122.1353-25F30.31
kidney, neonate N30.CNhs11203.1385-42H10.99
liver, adult pregnant day01.CNhs10466.508-5B20.30
liver, embryo E12.CNhs10601.355-15F80.17
liver, embryo E13.CNhs10524.378-3H60.20
liver, embryo E14.CNhs10594.409-16E10.22
liver, embryo E15.CNhs10520.433-16D70.41
liver, embryo E16.CNhs10523.462-17F50.00
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.16
liver, neonate N03.CNhs11123.1345-25G20.55
liver, neonate N06.CNhs11101.684-20A81.44
liver, neonate N07.CNhs11103.716-20H20.74
liver, neonate N10.CNhs11115.751-24B90.62
liver, neonate N20.CNhs11220.823-25A30.51
liver, neonate N25.CNhs11198.1368-26H11.44
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B12.59
lung, embryo E12.CNhs10522.354-16G21.71
lung, embryo E14.CNhs10604.404-26F82.12
lung, embryo E15.CNhs11020.432-17C51.19
lung, embryo E16.CNhs10998.458-17B61.17
lung, embryo E17.CNhs10605.480-44A61.01
lung, embryo E18.CNhs10583.1287-20I61.67
lung, neonate N00.CNhs11224.640-42C61.95
lung, neonate N06.CNhs11212.683-20E53.00
lung, neonate N07.CNhs11111.715-19A32.88
lung, neonate N10.CNhs11219.750-23E64.15
lung, neonate N20.CNhs11109.822-18A40.98
lung, neonate N25.CNhs11119.1359-25C71.73
lung, neonate N30.CNhs11133.1394-42H21.88
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.49
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C25.14
medulla oblongata, neonate N30.CNhs11200.1396-42A36.10
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.66
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C249.48
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E12.52
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E23.90
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E35.82
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D71.91
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D82.23
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D92.83
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D42.83
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D57.01
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D68.70
olfactory brain, adult.CNhs10489.18-22I923.78
ovary, adult.CNhs10507.91-2I74.12
ovary, embryo E18.CNhs11040.505-44H72.14
ovary, neonate N00.CNhs11217.1299-22I42.61
oviduct, adult pregnant day01.CNhs10500.988-6G63.96
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F42.19
pancreas, embryo E15.CNhs11042.1556-45F21.21
pancreas, embryo E16.CNhs11003.460-26E50.94
pancreas, embryo E17.CNhs10599.1558-45G31.18
pancreas, embryo E18.CNhs10580.1535-43I72.15
pancreas, neonate N00.CNhs11105.645-26G92.84
pancreas, neonate N01.CNhs11138.1531-43D73.64
pancreas, neonate N02.CNhs11139.1539-43D82.50
pancreas, neonate N16.CNhs11136.787-43B61.26
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G815.66
pituitary gland, embryo E12.CNhs11018.346-16E62.88
pituitary gland, embryo E13.CNhs11009.370-44C71.16
pituitary gland, embryo E14.CNhs11037.398-44A54.72
pituitary gland, embryo E15.CNhs10592.427-16B98.51
pituitary gland, embryo E16.CNhs11036.449-43F66.42
pituitary gland, embryo E17.CNhs11039.1265-44F56.09
pituitary gland, neonate N00.CNhs11190.1308-22E95.48
placenta, adult pregnant day10.CNhs10472.539-13I70.23
placenta, adult pregnant day17.CNhs10464.577-18G30.21
prostate, adult.CNhs10470.859-1F80.88
skin, adult.CNhs10492.30-1C34.62
skin, neonate N00.CNhs11124.650-25G42.10
skin, neonate N03.CNhs11215.662-22H32.23
skin, neonate N06.CNhs11097.693-20I52.98
skin, neonate N10.CNhs11108.762-6C40.98
small intestine, neonate N16.CNhs11114.790-21I11.17
spinal cord, adult.CNhs10505.24-13C96.68
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C11.44
spleen, embryo E18.CNhs11011.1271-21F20.37
spleen, neonate N10.CNhs11116.752-24D10.57
spleen, neonate N20.CNhs11112.824-19H10.27
spleen, neonate N25.CNhs11099.1354-25G30.23
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.95
stomach, embryo E12.CNhs10588.356-43E32.21
stomach, embryo E15.CNhs10603.1252-16G82.03
stomach, embryo E16.CNhs11022.459-17D42.48
stomach, embryo E17.CNhs11006.1035-18D51.88
stomach, embryo E18.CNhs10999.1286-20C61.31
stomach, neonate N03.CNhs11193.1340-24B82.16
stomach, neonate N07.CNhs11210.718-18A92.73
stomach, neonate N25.CNhs11104.1355-25E42.36
stomach, neonate N30.CNhs11134.1386-42I11.30
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F51.20
testis, embryo E15.CNhs11034.443-27C51.99
testis, embryo E16.CNhs11033.470-26G50.97
testis, embryo E17.CNhs11029.486-18I51.81
testis, embryo E18.CNhs11027.503-18G52.53
testis, neonate N00.CNhs11189.1300-22B74.46
testis, neonate N07.CNhs11222.726-26I43.65
testis, neonate N10.CNhs11204.763-44D92.10
testis, neonate N20.CNhs11110.839-18H30.48
testis, neonate N30.CNhs11130.1391-42E25.18
thymus, adult.CNhs10471.38-12B50.63
thymus, embryo E14.CNhs11041.402-44I40.41
thymus, embryo E15.CNhs11005.430-45I20.31
thymus, embryo E16.CNhs11002.456-26C50.00
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.00
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.15
thymus, neonate N06.CNhs11197.681-26C40.10
thymus, neonate N07.CNhs11211.713-19D30.00
thymus, neonate N10.CNhs11194.748-24E40.20
thymus, neonate N20.CNhs11186.820-7A20.19
thymus, neonate N25.CNhs11125.1362-25G70.00
thymus, neonate N30.CNhs11132.1393-42G20.12
tongue, adult.CNhs10499.32-1B48.39
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.44
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.27
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.67
urinary bladder, adult.CNhs10481.879-12E45.80
uterus, adult pregnant day19.CNhs10497.590-15F52.44
uterus, adult.CNhs10509.92-27E52.75
vagina, adult.CNhs10502.89-27D50.43
vesicular gland, adult.CNhs10491.51-27F82.01
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A119.77
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A221.17
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A320.62
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D719.76
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A429.46
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A521.91
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A626.33
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A726.57
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A822.20
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A925.37
whole body, embryo E11.CNhs11014.324-5I80.73
whole body, embryo E12.CNhs10587.857-27C94.39
whole body, embryo E13.CNhs10512.372-23H22.56
whole body, embryo E14.5.CNhs10578.420-27D23.40
whole body, embryo E14.CNhs10519.395-14B10.84
whole body, embryo E16.CNhs10514.453-14F20.18
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G57.56
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G55.77
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G57.06
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G55.81
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G55.07
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G56.22
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G55.24
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G55.63
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G56.43
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G56.19
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G55.79
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G56.17
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G58.24
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G56.48
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G54.80
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G55.50
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G55.72
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G53.92
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G55.74
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G55.16
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G56.22
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G54.74
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G56.79
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G56.17
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G56.52
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G55.32
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G55.73
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G56.51
whole body, embryo E17.5.CNhs10513.490-9F95.40
whole body, embryo E17.CNhs10517.475-3I54.25
whole body, embryo E18.CNhs10516.493-3B35.38
whole body, neonate N00.CNhs10525.657-19C26.45
whole body, neonate N01.CNhs10576.659-23C69.76
whole body, neonate N06.CNhs10515.692-21D19.71
whole body, neonate N10.CNhs10518.761-6B413.22





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest9.76e-2492
regional part of nervous system4.77e-1654
neurectoderm1.21e-1564
neural plate1.21e-1564
presumptive neural plate1.21e-1564
central nervous system2.39e-1573
neural tube8.59e-1552
neural rod8.59e-1552
future spinal cord8.59e-1552
neural keel8.59e-1552
nervous system1.58e-1475
ecto-epithelium6.02e-1373
ectoderm-derived structure9.01e-1395
ectoderm9.01e-1395
presumptive ectoderm9.01e-1395
brain9.69e-1347
future brain9.69e-1347
pre-chordal neural plate2.24e-1249
regional part of brain4.12e-1246
anterior neural tube4.72e-1240
regional part of forebrain1.54e-1139
forebrain1.54e-1139
future forebrain1.54e-1139
gray matter6.45e-1134
brain grey matter9.43e-0929
regional part of telencephalon9.43e-0929
telencephalon9.43e-0929
occipital lobe2.39e-0810
visual cortex2.39e-0810
neocortex2.39e-0810
tube4.52e-08114
anatomical conduit2.56e-07122
cerebral cortex4.95e-0721
cerebral hemisphere4.95e-0721
pallium4.95e-0721







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