FFCP PHASE1:Mm9::chr5:144131740..144131758,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=170935|HGNC=|MCL_coexpression_id=30|UniProt=Q0QWG9|association_with_transcript=-12bp_to_ENSMUST00000120825,uc009akf.1_5end|description=CAGE_peak_3_at_Grid2ip_5end|id=chr5:144131740..144131758,+|ontology_enrichment_celltype=CL:0000117!7.69e-12!23;CL:0000337!7.69e-12!23;CL:0000540!1.25e-08!33;CL:0000047!1.25e-08!33;CL:0000031!1.25e-08!33;CL:0000404!1.25e-08!33;CL:0002609!5.03e-08!6;CL:0002610!1.85e-07!3;CL:0002319!6.96e-07!43;CL:0000393!8.46e-07!39;CL:0000211!8.46e-07!39|ontology_enrichment_celltype_v019_2=CL:0002610,6.63e-23,3;CL:0000117,6.18e-08,23;CL:0000337,6.18e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.43e-16!73;UBERON:0005743!1.43e-16!73;UBERON:0000955!2.94e-16!50;UBERON:0006238!2.94e-16!50;UBERON:0000073!6.32e-16!75;UBERON:0001016!6.32e-16!75;UBERON:0002616!5.67e-15!49;UBERON:0001049!6.41e-15!52;UBERON:0005068!6.41e-15!52;UBERON:0006241!6.41e-15!52;UBERON:0007135!6.41e-15!52;UBERON:0004121!1.14e-14!102;UBERON:0000924!1.14e-14!102;UBERON:0006601!1.14e-14!102;UBERON:0000033!4.75e-14!63;UBERON:0002346!2.28e-11!71;UBERON:0003075!2.28e-11!71;UBERON:0007284!2.28e-11!71;UBERON:0003076!5.28e-10!12;UBERON:0003057!5.28e-10!12;UBERON:0002020!2.81e-09!34;UBERON:0007811!1.43e-08!86;UBERON:0002298!2.66e-08!6;UBERON:0003080!1.23e-07!40;UBERON:0004684!1.85e-07!3;UBERON:0002275!1.85e-07!3;UBERON:0003056!2.07e-07!49;UBERON:0000153!2.56e-07!94;UBERON:0002791!4.46e-07!29;UBERON:0003528!4.46e-07!29;UBERON:0001893!4.46e-07!29;UBERON:0002780!9.38e-07!39;UBERON:0001890!9.38e-07!39;UBERON:0006240!9.38e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0004684,6.63e-23,3;UBERON:0002275,6.63e-23,3;UBERON:0001017,1.35e-13,73;UBERON:0001016,3.30e-13,75;UBERON:0000073,8.86e-13,54;UBERON:0004733,7.42e-12,6;UBERON:0004732,7.42e-12,6;UBERON:0002028,7.42e-12,6;UBERON:0007277,7.42e-12,6;UBERON:0003076,2.47e-10,12;UBERON:0003057,2.47e-10,12;UBERON:0004121,3.22e-10,95;UBERON:0000924,3.22e-10,95;UBERON:0006601,3.22e-10,95;UBERON:0000955,2.46e-09,47;UBERON:0006238,2.46e-09,47;UBERON:0002037,1.14e-08,4;UBERON:0002680,1.14e-08,4;UBERON:0001895,1.14e-08,4;UBERON:0010092,1.14e-08,4;UBERON:0006215,1.14e-08,4;UBERON:0001049,1.94e-08,52;UBERON:0005068,1.94e-08,52;UBERON:0006241,1.94e-08,52;UBERON:0007135,1.94e-08,52;UBERON:0002616,2.36e-07,46|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,0.829516898467821,0.945041568321835,1.05162480675691,0.285650984403804,0.662605622854841,0.367472397644862,0.0958454710182364,0,4.40463523997555,3.31987079021488,3.99376986466233,0,0,0,1.3959149950069,0,0.15279824777681,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.8596286177044,20.7352239745321,0,0,0,0,0.449371918214468,0.915001205637253,0.251308704225729,0,0.255715457330331,3.32460871295296,1.94689515681309,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.617427674275707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12385412991454,0.937693492737625,0,0,0,0,0,0,0,0,0.404810701674894,0,0,1.92792789853084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0.238744688006273,0.164140899745061,0,5.37733375830478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0.259229946583586,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115884325944855,0.192909220463705,0.412085900803307,0,0,0,0,0.145346416632329,0,0,0,0,0.135804113845862,0,0,0.0985044823755635,0,0,0.192906610981141,0,0,0,0,0,0|short_description=p3@Grid2ip}} | ||
|EntrezGene=170935 | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|UniProt=Q0QWG9 | |||
|association_with_transcript=-12bp_to_ENSMUST00000120825,uc009akf.1_5end | |||
|description=CAGE_peak_3_at_Grid2ip_5end | |||
|id=chr5:144131740..144131758,+ | |||
|ontology_enrichment_celltype=CL:0000117!7.69e-12!23;CL:0000337!7.69e-12!23;CL:0000540!1.25e-08!33;CL:0000047!1.25e-08!33;CL:0000031!1.25e-08!33;CL:0000404!1.25e-08!33;CL:0002609!5.03e-08!6;CL:0002610!1.85e-07!3;CL:0002319!6.96e-07!43;CL:0000393!8.46e-07!39;CL:0000211!8.46e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,6.63e-23,3;CL:0000117,6.18e-08,23;CL:0000337,6.18e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.43e-16!73;UBERON:0005743!1.43e-16!73;UBERON:0000955!2.94e-16!50;UBERON:0006238!2.94e-16!50;UBERON:0000073!6.32e-16!75;UBERON:0001016!6.32e-16!75;UBERON:0002616!5.67e-15!49;UBERON:0001049!6.41e-15!52;UBERON:0005068!6.41e-15!52;UBERON:0006241!6.41e-15!52;UBERON:0007135!6.41e-15!52;UBERON:0004121!1.14e-14!102;UBERON:0000924!1.14e-14!102;UBERON:0006601!1.14e-14!102;UBERON:0000033!4.75e-14!63;UBERON:0002346!2.28e-11!71;UBERON:0003075!2.28e-11!71;UBERON:0007284!2.28e-11!71;UBERON:0003076!5.28e-10!12;UBERON:0003057!5.28e-10!12;UBERON:0002020!2.81e-09!34;UBERON:0007811!1.43e-08!86;UBERON:0002298!2.66e-08!6;UBERON:0003080!1.23e-07!40;UBERON:0004684!1.85e-07!3;UBERON:0002275!1.85e-07!3;UBERON:0003056!2.07e-07!49;UBERON:0000153!2.56e-07!94;UBERON:0002791!4.46e-07!29;UBERON:0003528!4.46e-07!29;UBERON:0001893!4.46e-07!29;UBERON:0002780!9.38e-07!39;UBERON:0001890!9.38e-07!39;UBERON:0006240!9.38e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,6.63e-23,3;UBERON:0002275,6.63e-23,3;UBERON:0001017,1.35e-13,73;UBERON:0001016,3.30e-13,75;UBERON:0000073,8.86e-13,54;UBERON:0004733,7.42e-12,6;UBERON:0004732,7.42e-12,6;UBERON:0002028,7.42e-12,6;UBERON:0007277,7.42e-12,6;UBERON:0003076,2.47e-10,12;UBERON:0003057,2.47e-10,12;UBERON:0004121,3.22e-10,95;UBERON:0000924,3.22e-10,95;UBERON:0006601,3.22e-10,95;UBERON:0000955,2.46e-09,47;UBERON:0006238,2.46e-09,47;UBERON:0002037,1.14e-08,4;UBERON:0002680,1.14e-08,4;UBERON:0001895,1.14e-08,4;UBERON:0010092,1.14e-08,4;UBERON:0006215,1.14e-08,4;UBERON:0001049,1.94e-08,52;UBERON:0005068,1.94e-08,52;UBERON:0006241,1.94e-08,52;UBERON:0007135,1.94e-08,52;UBERON:0002616,2.36e-07,46 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,0.829516898467821,0.945041568321835,1.05162480675691,0.285650984403804,0.662605622854841,0.367472397644862,0.0958454710182364,0,4.40463523997555,3.31987079021488,3.99376986466233,0,0,0,1.3959149950069,0,0.15279824777681,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.8596286177044,20.7352239745321,0,0,0,0,0.449371918214468,0.915001205637253,0.251308704225729,0,0.255715457330331,3.32460871295296,1.94689515681309,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.617427674275707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12385412991454,0.937693492737625,0,0,0,0,0,0,0,0,0.404810701674894,0,0,1.92792789853084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0.238744688006273,0.164140899745061,0,5.37733375830478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0.259229946583586,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115884325944855,0.192909220463705,0.412085900803307,0,0,0,0,0.145346416632329,0,0,0,0,0.135804113845862,0,0,0.0985044823755635,0,0,0.192906610981141,0,0,0,0,0,0 | |||
|short_description=p3@Grid2ip | |||
}} |
Revision as of 06:58, 14 September 2013
Short description: | p3@Grid2ip |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Grid2ip_5end |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | -12bp_to_ENSMUST00000120825, uc009akf.1_5end |
EntrezGene: | Grid2ip |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 6.63e-23 | 3 |
CNS neuron (sensu Vertebrata) | 6.18e-08 | 23 |
neuroblast (sensu Vertebrata) | 6.18e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 6.63e-23 | 3 |
reticular formation | 6.63e-23 | 3 |
central nervous system | 1.35e-13 | 73 |
nervous system | 3.30e-13 | 75 |
regional part of nervous system | 8.86e-13 | 54 |
segmental subdivision of hindbrain | 7.42e-12 | 6 |
segmental subdivision of nervous system | 7.42e-12 | 6 |
hindbrain | 7.42e-12 | 6 |
presumptive hindbrain | 7.42e-12 | 6 |
posterior neural tube | 2.47e-10 | 12 |
chordal neural plate | 2.47e-10 | 12 |
ectoderm-derived structure | 3.22e-10 | 95 |
ectoderm | 3.22e-10 | 95 |
presumptive ectoderm | 3.22e-10 | 95 |
brain | 2.46e-09 | 47 |
future brain | 2.46e-09 | 47 |
cerebellum | 1.14e-08 | 4 |
regional part of metencephalon | 1.14e-08 | 4 |
metencephalon | 1.14e-08 | 4 |
future metencephalon | 1.14e-08 | 4 |
rhombic lip | 1.14e-08 | 4 |
neural tube | 1.94e-08 | 52 |
neural rod | 1.94e-08 | 52 |
future spinal cord | 1.94e-08 | 52 |
neural keel | 1.94e-08 | 52 |
regional part of brain | 2.36e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.