FFCP PHASE1:Hg19::chr9:100263912..100263988,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7111|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11871|TSSclassifier=S|UniProt=P28289|association_with_transcript=0bp_to_ENST00000259365,NM_003275,uc004axk.1_5end|coexpression_cluster_id=C2934|description=CAGE_peak_1_at_TMOD1_5end|id=chr9:100263912..100263988,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006601;3.87e-08;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.08e-52!115;UBERON:0001049!2.31e-19!57;UBERON:0005068!2.31e-19!57;UBERON:0006241!2.31e-19!57;UBERON:0007135!2.31e-19!57;UBERON:0001017!3.74e-19!82;UBERON:0005743!2.45e-18!86;UBERON:0000073!1.47e-16!94;UBERON:0001016!1.47e-16!94;UBERON:0003080!2.28e-15!42;UBERON:0000955!2.85e-15!69;UBERON:0006238!2.85e-15!69;UBERON:0002780!5.41e-15!41;UBERON:0001890!5.41e-15!41;UBERON:0006240!5.41e-15!41;UBERON:0002616!1.92e-14!59;UBERON:0001893!1.53e-12!34;UBERON:0002020!1.83e-12!34;UBERON:0003528!1.83e-12!34;UBERON:0003075!3.68e-12!86;UBERON:0007284!3.68e-12!86;UBERON:0002791!3.77e-12!33;UBERON:0001869!6.78e-12!32;UBERON:0002619!4.19e-11!22;UBERON:0002346!1.78e-10!90;UBERON:0001950!1.79e-10!20;UBERON:0004111!6.94e-10!241;UBERON:0000956!3.91e-09!25;UBERON:0000203!3.91e-09!25;UBERON:0000025!4.19e-09!194;UBERON:0000477!8.71e-09!286;UBERON:0003056!3.95e-07!61|ontology_enrichment_uberon_v019=UBERON:0007023;5.74e-15;114!UBERON:0002619;1.62e-12;22!UBERON:0002780;2.56e-12;41!UBERON:0001890;2.56e-12;41!UBERON:0001950;8.49e-12;20!UBERON:0001893;9.15e-12;34!UBERON:0001869;1.06e-11;32!UBERON:0003528;1.08e-11;34!UBERON:0002020;1.08e-11;34!UBERON:0002791;1.30e-11;32!UBERON:0000073;1.31e-11;53!UBERON:0002616;1.31e-11;53!UBERON:0000956;7.27e-10;25!UBERON:0000203;7.27e-10;25!UBERON:0001017;2.00e-08;75!UBERON:0000955;2.68e-08;68!UBERON:0001016;4.79e-08;83!UBERON:0000922;3.02e-07;49|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.22e-59,114;UBERON:0001049,4.06e-21,56;UBERON:0005068,4.06e-21,56;UBERON:0006241,4.06e-21,56;UBERON:0007135,4.06e-21,56;UBERON:0001017,9.89e-21,81;UBERON:0000073,2.25e-19,53;UBERON:0002616,2.25e-19,53;UBERON:0001016,4.81e-19,89;UBERON:0000955,4.62e-17,68;UBERON:0006238,4.62e-17,68;UBERON:0002780,1.43e-16,41;UBERON:0001890,1.43e-16,41;UBERON:0003080,1.43e-16,41;UBERON:0006240,1.43e-16,41;UBERON:0011216,2.41e-14,223;UBERON:0003075,7.91e-14,82;UBERON:0007284,7.91e-14,82;UBERON:0001893,9.26e-14,34;UBERON:0003528,1.13e-13,34;UBERON:0002020,1.13e-13,34;UBERON:0001869,5.10e-13,32;UBERON:0002791,6.66e-13,32;UBERON:0002619,1.62e-12,22;UBERON:0002346,4.03e-12,86;UBERON:0001950,8.56e-12,20;UBERON:0000956,7.25e-10,25;UBERON:0000203,7.25e-10,25;UBERON:0003056,9.37e-09,61;UBERON:0010371,8.47e-08,104;UBERON:0010314,7.66e-07,132|phase1_expression=0.363356758541113,1.07050261945492,1.40954404095971,2.00146596706261,3.5756887554183,4.36169262050184,0,0,3.3954131665979,0.491467873003018,0,0,0,1.48519623552056,2.98257638155124,1.34465029290355,1.20538905604795,1.46062018077475,1.95173119516203,0.246242116153576,0,2.19418305034661,0.572471974262113,0,0.125542639594803,14.5949604978587,9.44156778674376,11.0982201652288,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0.293600439334847,1.10799081706375,1.60435557976113,0.868043482863407,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0.619412741790207,0.28769239232215,0.256160706529101,0.236482229888585,0.344745680736619,0.645484683583826,0,0,0.272906150057846,0,0.306083892370903,0,0,0,0.997318288108159,0,0.580418477257168,1.13477044938228,0,0.251248665256743,0,0,4.84319602106695,1.10483290796269,0.316462387440884,0.211255286311942,0,0,0.22465726229299,0.300353785683013,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,7.93027971474155,5.60508562981536,6.05783394982677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0.361439152384566,1.00267582127178,1.44846518960824,3.1811437882044,2.91980922181582,0,0,0,19.7778404001546,0,0,0,0,0,0,0,0,0,0.860234595106124,0.347140501607594,0,0.838998872419812,0,0.208994966536811,0.775250277507987,1.06729878806013,4.01664735317604,11.2792208790561,3.04108842287405,2.68468263302986,1.10298924103761,0.81014194788176,1.07159673940896,2.2452937262617,1.0135033243499,0,0.949265659568129,0.366403487860815,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0.560677600142307,1.06748995729705,0.74000264525148,1.24484414159907,0.404132016209064,0,0.908144565869588,0,0,0,0,0.298897361103602,0,0,0,0,0,0.103325781175765,1.18800285728205,0.247266929278557,0,0,0,0,0.277064115484183,0,0,0.300476117813194,0.113432183160021,0.179389635688862,0,0,0,0.103052529238439,0,0,0.168776332241266,0,0.252433774244115,0,0.80823028409406,0,0.302256294682921,0.169560592310488,0.193260853163297,0.545492241181669,0,1.09776335516636,2.51806559810822,4.88014560051977,1.86589899027667,1.7662459561294,1.45990943630332,0,0,0,0,0,8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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7111 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11871 | |||
|TSSclassifier=S | |||
|UniProt=P28289 | |||
|association_with_transcript=0bp_to_ENST00000259365,NM_003275,uc004axk.1_5end | |||
|coexpression_cluster_id=C2934 | |||
|description=CAGE_peak_1_at_TMOD1_5end | |||
|id=chr9:100263912..100263988,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.87e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.08e-52!115;UBERON:0001049!2.31e-19!57;UBERON:0005068!2.31e-19!57;UBERON:0006241!2.31e-19!57;UBERON:0007135!2.31e-19!57;UBERON:0001017!3.74e-19!82;UBERON:0005743!2.45e-18!86;UBERON:0000073!1.47e-16!94;UBERON:0001016!1.47e-16!94;UBERON:0003080!2.28e-15!42;UBERON:0000955!2.85e-15!69;UBERON:0006238!2.85e-15!69;UBERON:0002780!5.41e-15!41;UBERON:0001890!5.41e-15!41;UBERON:0006240!5.41e-15!41;UBERON:0002616!1.92e-14!59;UBERON:0001893!1.53e-12!34;UBERON:0002020!1.83e-12!34;UBERON:0003528!1.83e-12!34;UBERON:0003075!3.68e-12!86;UBERON:0007284!3.68e-12!86;UBERON:0002791!3.77e-12!33;UBERON:0001869!6.78e-12!32;UBERON:0002619!4.19e-11!22;UBERON:0002346!1.78e-10!90;UBERON:0001950!1.79e-10!20;UBERON:0004111!6.94e-10!241;UBERON:0000956!3.91e-09!25;UBERON:0000203!3.91e-09!25;UBERON:0000025!4.19e-09!194;UBERON:0000477!8.71e-09!286;UBERON:0003056!3.95e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;5.74e-15;114!UBERON:0002619;1.62e-12;22!UBERON:0002780;2.56e-12;41!UBERON:0001890;2.56e-12;41!UBERON:0001950;8.49e-12;20!UBERON:0001893;9.15e-12;34!UBERON:0001869;1.06e-11;32!UBERON:0003528;1.08e-11;34!UBERON:0002020;1.08e-11;34!UBERON:0002791;1.30e-11;32!UBERON:0000073;1.31e-11;53!UBERON:0002616;1.31e-11;53!UBERON:0000956;7.27e-10;25!UBERON:0000203;7.27e-10;25!UBERON:0001017;2.00e-08;75!UBERON:0000955;2.68e-08;68!UBERON:0001016;4.79e-08;83!UBERON:0000922;3.02e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.22e-59,114;UBERON:0001049,4.06e-21,56;UBERON:0005068,4.06e-21,56;UBERON:0006241,4.06e-21,56;UBERON:0007135,4.06e-21,56;UBERON:0001017,9.89e-21,81;UBERON:0000073,2.25e-19,53;UBERON:0002616,2.25e-19,53;UBERON:0001016,4.81e-19,89;UBERON:0000955,4.62e-17,68;UBERON:0006238,4.62e-17,68;UBERON:0002780,1.43e-16,41;UBERON:0001890,1.43e-16,41;UBERON:0003080,1.43e-16,41;UBERON:0006240,1.43e-16,41;UBERON:0011216,2.41e-14,223;UBERON:0003075,7.91e-14,82;UBERON:0007284,7.91e-14,82;UBERON:0001893,9.26e-14,34;UBERON:0003528,1.13e-13,34;UBERON:0002020,1.13e-13,34;UBERON:0001869,5.10e-13,32;UBERON:0002791,6.66e-13,32;UBERON:0002619,1.62e-12,22;UBERON:0002346,4.03e-12,86;UBERON:0001950,8.56e-12,20;UBERON:0000956,7.25e-10,25;UBERON:0000203,7.25e-10,25;UBERON:0003056,9.37e-09,61;UBERON:0010371,8.47e-08,104;UBERON:0010314,7.66e-07,132 | |||
|phase1_expression=0.363356758541113,1.07050261945492,1.40954404095971,2.00146596706261,3.5756887554183,4.36169262050184,0,0,3.3954131665979,0.491467873003018,0,0,0,1.48519623552056,2.98257638155124,1.34465029290355,1.20538905604795,1.46062018077475,1.95173119516203,0.246242116153576,0,2.19418305034661,0.572471974262113,0,0.125542639594803,14.5949604978587,9.44156778674376,11.0982201652288,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0.293600439334847,1.10799081706375,1.60435557976113,0.868043482863407,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0.619412741790207,0.28769239232215,0.256160706529101,0.236482229888585,0.344745680736619,0.645484683583826,0,0,0.272906150057846,0,0.306083892370903,0,0,0,0.997318288108159,0,0.580418477257168,1.13477044938228,0,0.251248665256743,0,0,4.84319602106695,1.10483290796269,0.316462387440884,0.211255286311942,0,0,0.22465726229299,0.300353785683013,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,7.93027971474155,5.60508562981536,6.05783394982677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0.361439152384566,1.00267582127178,1.44846518960824,3.1811437882044,2.91980922181582,0,0,0,19.7778404001546,0,0,0,0,0,0,0,0,0,0.860234595106124,0.347140501607594,0,0.838998872419812,0,0.208994966536811,0.775250277507987,1.06729878806013,4.01664735317604,11.2792208790561,3.04108842287405,2.68468263302986,1.10298924103761,0.81014194788176,1.07159673940896,2.2452937262617,1.0135033243499,0,0.949265659568129,0.366403487860815,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0.560677600142307,1.06748995729705,0.74000264525148,1.24484414159907,0.404132016209064,0,0.908144565869588,0,0,0,0,0.298897361103602,0,0,0,0,0,0.103325781175765,1.18800285728205,0.247266929278557,0,0,0,0,0.277064115484183,0,0,0.300476117813194,0.113432183160021,0.179389635688862,0,0,0,0.103052529238439,0,0,0.168776332241266,0,0.252433774244115,0,0.80823028409406,0,0.302256294682921,0.169560592310488,0.193260853163297,0.545492241181669,0,1.09776335516636,2.51806559810822,4.88014560051977,1.86589899027667,1.7662459561294,1.45990943630332,0,0,0,0,0,8.6363964029086,12.3066823757014,10.3634742849897,11.6911611096338,14.1621638660064,8.54174228799948,12.5393116588953,14.9128313495263,13.8508976500701,2.21446636387394,0,0.4115740113314,1.47008711385542,45.6318125358591,21.6221987669078,53.1710916013264,0.441463099414651,0.614942192715568,0,0,0,0,0,0,0,0,0.231860809950154,0.117408694235822,4.76409277611544,3.24089858803628,7.03940363268014,0.790204397959275,0.858486162094873,0,0,0.743155811443641,0,0.16798212819886,0,0,0,0,75.8701386359753,28.9679347903514,79.1993401365749,229.006605979552,120.940251222472,1.26995788584338,0.381988425558278,0,1.71072446022705,1.64523988325318,1.8020583470635,11.7188837378537,0,0,0,0,0,0,2.39344304926383,4.16029747645464,0,0,0,0,0.542621605391443,0,0.325736184293735,0,0,3.61727252471503,3.48613383440118,1.79951384127703,0,0,0,0,0,0,0.434343920002738,0.205476322550383,0,0.112085143993527,0.197030760201927,0.215627574859517,0.128343036279748,1.27047312111232,36.4391590801341,54.9035057072164,50.5899121309733,39.5522026024961,0,0,0.414415513436035,5.03035116048474,0.500170521059677,0,0.623912584592421,0,0.788512075169673,0.937131319941706,0,0,1.03473071292505,0,0,1.56390506042549,0,5.49029478097369,0,0.647142602455851,0.426910231213777,0,0,0.30239029332968,0,0.153461973288062,0,0.128139149255701,0,0,2.96836132889982,0,0.177561725313127,0.0821271560138091,2.59627214591811,0.232420756919918,0.604297247958111,0,0,1.14814448164607,3.64182336013434,19.9309110738325,0,0.770153371044148,2.35304930753057,2.92278449306521,3.9054102690364,3.4120015221269,1.70093705276516,1.29549549661284,3.08454505380579,0.812839312631559,1.00337954770971,0.509752546090077,2.49322802678617,0.447749509444357,123.662570428307,103.005567703811,0.256450125116389,0.328014645699706,0,17.1048079335219,0.0915694648183434,0,0,0,0,0.580024309752732,0.154048617114644,0.307007349452259,0.275673144969061,0.107420244868274,0.145016693914229,1.10794615640931,18.3405993432279,0,0,0,0,0,0,0,1.23213432070436,11.1784266366575,0.869932992075073,0.55597265731176,0.858749320451947,0,0,0,0,1.28381696410176,0.95460974377781,0,0,0,0,12.3331313759723,0,0.421258456238981,0,5.84912375115083,0,6.00599610195137,1.1312434556297,7.910568163417,6.06501877900737,0,0.438450885253763,0,0,0.608731130888112,0,0.281695602532241,0.143411352204052,0,0.35667105148125,1.06428319221179,0.422215270595328,0.329294892959902,0,0,0,0,0,18.8287601553558,0,0,0,0,122.802321434185,148.339618185621,141.272502419192,37.8788522977884,34.9657932123265,110.888936213955,123.667199127528,208.591921365393,0.106824071127473,8.66231869737023,1.47024129588619,0,0,0,0.159426272728822,0,0,0,0.324621940274555,0,0,0,2.50634477090067,2.03150133361924,0.321176150207399,1.21079824314629,15.7563107945421,2.40453741329035,8.90998216494528,12.9732142577601,7.34136223532397,3.90776190804081,35.0791779108005,11.0778659052941,12.7114168883712,0,12.688830457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| |||
|short_description=p1@TMOD1 | |||
}} |
Revision as of 06:34, 14 September 2013
Short description: | p1@TMOD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TMOD1_5end |
Coexpression cluster: | C2934_heart_left_Mast_Whole_skeletal_tongue_neuroblastoma |
Association with transcript: | 0bp_to_ENST00000259365, NM_003275, uc004axk.1_5end |
EntrezGene: | TMOD1 |
HGNC: | 11871 |
UniProt: | P28289 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.22e-59 | 114 |
neural tube | 4.06e-21 | 56 |
neural rod | 4.06e-21 | 56 |
future spinal cord | 4.06e-21 | 56 |
neural keel | 4.06e-21 | 56 |
central nervous system | 9.89e-21 | 81 |
regional part of nervous system | 2.25e-19 | 53 |
regional part of brain | 2.25e-19 | 53 |
nervous system | 4.81e-19 | 89 |
brain | 4.62e-17 | 68 |
future brain | 4.62e-17 | 68 |
regional part of forebrain | 1.43e-16 | 41 |
forebrain | 1.43e-16 | 41 |
anterior neural tube | 1.43e-16 | 41 |
future forebrain | 1.43e-16 | 41 |
organ system subdivision | 2.41e-14 | 223 |
neural plate | 7.91e-14 | 82 |
presumptive neural plate | 7.91e-14 | 82 |
telencephalon | 9.26e-14 | 34 |
brain grey matter | 1.13e-13 | 34 |
gray matter | 1.13e-13 | 34 |
cerebral hemisphere | 5.10e-13 | 32 |
regional part of telencephalon | 6.66e-13 | 32 |
regional part of cerebral cortex | 1.62e-12 | 22 |
neurectoderm | 4.03e-12 | 86 |
neocortex | 8.56e-12 | 20 |
cerebral cortex | 7.25e-10 | 25 |
pallium | 7.25e-10 | 25 |
pre-chordal neural plate | 9.37e-09 | 61 |
ecto-epithelium | 8.47e-08 | 104 |
structure with developmental contribution from neural crest | 7.66e-07 | 132 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.