FFCP PHASE1:Mm9::chr5:121038624..121038660,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=252972|HGNC=|UniProt=Q9EQJ0|association_with_transcript=-2bp_to_ENSMUST00000046426,NM_145853,uc008zhm.1,uc008zhn.1_5end|description=CAGE_peak_1_at_Tpcn1_5end|id=chr5:121038624..121038660,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!5.04e-09!130;UBERON:0000925!5.04e-09!130;UBERON:0006595!5.04e-09!130;UBERON:0004921!9.22e-09!126;UBERON:0004185!9.22e-09!126;UBERON:0005172!1.30e-08!49;UBERON:0005173!1.30e-08!49;UBERON:0002417!1.30e-08!49;UBERON:0000916!1.30e-08!49;UBERON:0001007!2.58e-08!128;UBERON:0001555!2.58e-08!128;UBERON:0007026!2.58e-08!128;UBERON:0002365!3.07e-08!25;UBERON:0002330!3.07e-08!25;UBERON:0009854!6.89e-08!23;UBERON:0009856!6.89e-08!23;UBERON:0002107!2.53e-07!22;UBERON:0007499!2.53e-07!22;UBERON:0006925!2.53e-07!22;UBERON:0009497!2.53e-07!22;UBERON:0000015!2.53e-07!22;UBERON:0002423!2.53e-07!22;UBERON:0006235!2.53e-07!22;UBERON:0008835!2.53e-07!22;UBERON:0003894!2.53e-07!22;UBERON:0004161!2.53e-07!22;UBERON:0008836!2.53e-07!22|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.47e-09,118;UBERON:0000925,7.47e-09,118;UBERON:0006595,7.47e-09,118;UBERON:0005172,1.30e-08,49;UBERON:0005173,1.30e-08,49;UBERON:0002417,1.30e-08,49;UBERON:0000916,1.30e-08,49;UBERON:0004921,1.31e-08,114;UBERON:0002365,3.07e-08,25;UBERON:0002330,3.07e-08,25;UBERON:0001007,3.82e-08,116;UBERON:0001555,3.82e-08,116;UBERON:0007026,3.82e-08,116;UBERON:0009854,6.89e-08,23;UBERON:0009856,6.89e-08,23;UBERON:0002107,2.53e-07,22;UBERON:0007499,2.53e-07,22;UBERON:0006925,2.53e-07,22;UBERON:0009497,2.53e-07,22;UBERON:0000015,2.53e-07,22;UBERON:0002423,2.53e-07,22;UBERON:0006235,2.53e-07,22;UBERON:0008835,2.53e-07,22;UBERON:0003894,2.53e-07,22;UBERON:0004161,2.53e-07,22;UBERON:0008836,2.53e-07,22|phase1_expression=41.3184025530368,143.428892539777,131.949779422965,138.528608778528,131.234681245943,22.6637017081051,20.3242997318107,61.4627019581903,7.32101355188667,11.0010327371337,4.96532107853964,6.30200056063158,42.457781022939,57.3477839868623,96.2687211647265,84.6346617689472,123.122890550554,18.7699988388151,19.4702495720149,25.0389894560838,56.2136147898571,26.4113930194355,11.4927907221132,30.5585527535407,29.5937972576649,95.8967380072084,57.2913454891569,52.5749807753569,66.6982202291872,58.9750503638238,38.3593783433677,60.327913978665,57.8160900329496,31.6963362030877,8.95440021228951,8.14549762256613,5.71674197534634,12.5559489221072,7.813353445238,7.85285615960697,32.9409633297368,36.2014107027976,28.1596004758069,27.8231967726026,26.6621329107323,17.0698479510364,52.4202200713186,46.4393583090351,30.7560655828261,29.9422044574396,36.2564832009689,25.8754615856949,10.0669563634642,37.7188313845899,34.9537551108163,77.692349682856,46.7049507100173,46.9261603972473,10.3181395038395,14.2827564403449,16.4796164911607,46.4217008934711,37.3503814366679,38.6956878431002,58.3431153914515,49.733608046227,79.0944291768589,85.2964637813851,24.7818173417262,18.765825428105,23.3460707100034,31.992910253226,36.001572175113,14.3314235081496,11.9806838772795,11.0306254393203,17.6185409599022,30.9003358166154,26.1131106535614,12.1335384711778,12.8997577479398,12.5019208933622,31.8268618861574,29.826418331679,34.5324039975591,33.5876587439981,30.1827963294098,18.0807462450542,9.76867893998074,17.1547441442403,53.9147948985121,44.7420416030321,28.5587960157255,63.1452734216246,123.457519315057,119.175151967891,76.8230978120683,11.5892619353079,6.23486411046885,7.77347063922748,18.3096445709685,6.41632387071589,7.64415719119937,0,3.46385665617943,2.78695852022608,3.0331466700887,55.7217333029013,32.6261733395436,38.7433982959193,40.9425371168081,33.4912026143355,37.1290950582254,26.5271847372616,36.0997330906614,36.0663117116169,188.609760381327,114.23349196673,91.9994974027869,68.4273775277541,84.1406185334099,74.185913729689,124.882480016142,43.0387771606974,47.7538491534678,80.9798865011235,7.30872259486114,5.99902730993408,5.20987930999565,41.1924258363262,43.4625572677695,13.8219787324151,32.5051478759557,31.9644321662913,34.7006034414465,28.0677385107221,47.5589829180977,60.4617877165052,36.1393544560155,62.7116730541692,21.9903548606969,22.9902104433473,27.5495058602184,33.9085840130359,37.4881110323816,30.6191791480791,34.8570415362191,57.4321483040615,30.1795190105979,27.0421694639982,30.4395444803631,31.7833812019983,33.0876226578461,56.0685988100688,43.625812918484,38.4136134959692,6.31991868581911,6.69104558498259,6.53576048609863,35.8327586486418,30.2538617375614,20.3470129450947,33.3810077175146,23.4149435779411,24.065669610431,22.3232586960392,26.8273401399619,31.8769384662373,29.78533283434,29.8784784623953,53.0190014429896,50.0003956994637,46.3250743264117,52.4747097353054,43.5300193527743,35.810805107991,149.018871125693,84.0952801990071,31.1400845781442,29.9585306699966,42.6551296976129,63.5303102563529,66.4910351096162,85.7917573767642,94.9058123089023,90.74912405293,88.469993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| ||
|EntrezGene=252972 | |||
|HGNC= | |||
|UniProt=Q9EQJ0 | |||
|association_with_transcript=-2bp_to_ENSMUST00000046426,NM_145853,uc008zhm.1,uc008zhn.1_5end | |||
|description=CAGE_peak_1_at_Tpcn1_5end | |||
|id=chr5:121038624..121038660,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!5.04e-09!130;UBERON:0000925!5.04e-09!130;UBERON:0006595!5.04e-09!130;UBERON:0004921!9.22e-09!126;UBERON:0004185!9.22e-09!126;UBERON:0005172!1.30e-08!49;UBERON:0005173!1.30e-08!49;UBERON:0002417!1.30e-08!49;UBERON:0000916!1.30e-08!49;UBERON:0001007!2.58e-08!128;UBERON:0001555!2.58e-08!128;UBERON:0007026!2.58e-08!128;UBERON:0002365!3.07e-08!25;UBERON:0002330!3.07e-08!25;UBERON:0009854!6.89e-08!23;UBERON:0009856!6.89e-08!23;UBERON:0002107!2.53e-07!22;UBERON:0007499!2.53e-07!22;UBERON:0006925!2.53e-07!22;UBERON:0009497!2.53e-07!22;UBERON:0000015!2.53e-07!22;UBERON:0002423!2.53e-07!22;UBERON:0006235!2.53e-07!22;UBERON:0008835!2.53e-07!22;UBERON:0003894!2.53e-07!22;UBERON:0004161!2.53e-07!22;UBERON:0008836!2.53e-07!22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.47e-09,118;UBERON:0000925,7.47e-09,118;UBERON:0006595,7.47e-09,118;UBERON:0005172,1.30e-08,49;UBERON:0005173,1.30e-08,49;UBERON:0002417,1.30e-08,49;UBERON:0000916,1.30e-08,49;UBERON:0004921,1.31e-08,114;UBERON:0002365,3.07e-08,25;UBERON:0002330,3.07e-08,25;UBERON:0001007,3.82e-08,116;UBERON:0001555,3.82e-08,116;UBERON:0007026,3.82e-08,116;UBERON:0009854,6.89e-08,23;UBERON:0009856,6.89e-08,23;UBERON:0002107,2.53e-07,22;UBERON:0007499,2.53e-07,22;UBERON:0006925,2.53e-07,22;UBERON:0009497,2.53e-07,22;UBERON:0000015,2.53e-07,22;UBERON:0002423,2.53e-07,22;UBERON:0006235,2.53e-07,22;UBERON:0008835,2.53e-07,22;UBERON:0003894,2.53e-07,22;UBERON:0004161,2.53e-07,22;UBERON:0008836,2.53e-07,22 | |||
|phase1_expression=41.3184025530368,143.428892539777,131.949779422965,138.528608778528,131.234681245943,22.6637017081051,20.3242997318107,61.4627019581903,7.32101355188667,11.0010327371337,4.96532107853964,6.30200056063158,42.457781022939,57.3477839868623,96.2687211647265,84.6346617689472,123.122890550554,18.7699988388151,19.4702495720149,25.0389894560838,56.2136147898571,26.4113930194355,11.4927907221132,30.5585527535407,29.5937972576649,95.8967380072084,57.2913454891569,52.5749807753569,66.6982202291872,58.9750503638238,38.3593783433677,60.327913978665,57.8160900329496,31.6963362030877,8.95440021228951,8.14549762256613,5.71674197534634,12.5559489221072,7.813353445238,7.85285615960697,32.9409633297368,36.2014107027976,28.1596004758069,27.8231967726026,26.6621329107323,17.0698479510364,52.4202200713186,46.4393583090351,30.7560655828261,29.9422044574396,36.2564832009689,25.8754615856949,10.0669563634642,37.7188313845899,34.9537551108163,77.692349682856,46.7049507100173,46.9261603972473,10.3181395038395,14.2827564403449,16.4796164911607,46.4217008934711,37.3503814366679,38.6956878431002,58.3431153914515,49.733608046227,79.0944291768589,85.2964637813851,24.7818173417262,18.765825428105,23.3460707100034,31.992910253226,36.001572175113,14.3314235081496,11.9806838772795,11.0306254393203,17.6185409599022,30.9003358166154,26.1131106535614,12.1335384711778,12.8997577479398,12.5019208933622,31.8268618861574,29.826418331679,34.5324039975591,33.5876587439981,30.1827963294098,18.0807462450542,9.76867893998074,17.1547441442403,53.9147948985121,44.7420416030321,28.5587960157255,63.1452734216246,123.457519315057,119.175151967891,76.8230978120683,11.5892619353079,6.23486411046885,7.77347063922748,18.3096445709685,6.41632387071589,7.64415719119937,0,3.46385665617943,2.78695852022608,3.0331466700887,55.7217333029013,32.6261733395436,38.7433982959193,40.9425371168081,33.4912026143355,37.1290950582254,26.5271847372616,36.0997330906614,36.0663117116169,188.609760381327,114.23349196673,91.9994974027869,68.4273775277541,84.1406185334099,74.185913729689,124.882480016142,43.0387771606974,47.7538491534678,80.9798865011235,7.30872259486114,5.99902730993408,5.20987930999565,41.1924258363262,43.4625572677695,13.8219787324151,32.5051478759557,31.9644321662913,34.7006034414465,28.0677385107221,47.5589829180977,60.4617877165052,36.1393544560155,62.7116730541692,21.9903548606969,22.9902104433473,27.5495058602184,33.9085840130359,37.4881110323816,30.6191791480791,34.8570415362191,57.4321483040615,30.1795190105979,27.0421694639982,30.4395444803631,31.7833812019983,33.0876226578461,56.0685988100688,43.625812918484,38.4136134959692,6.31991868581911,6.69104558498259,6.53576048609863,35.8327586486418,30.2538617375614,20.3470129450947,33.3810077175146,23.4149435779411,24.065669610431,22.3232586960392,26.8273401399619,31.8769384662373,29.78533283434,29.8784784623953,53.0190014429896,50.0003956994637,46.3250743264117,52.4747097353054,43.5300193527743,35.810805107991,149.018871125693,84.0952801990071,31.1400845781442,29.9585306699966,42.6551296976129,63.5303102563529,66.4910351096162,85.7917573767642,94.9058123089023,90.74912405293,88.4699934976949,99.2792795485343,109.374852873826,104.26305140389,88.4004623987499,105.744016098069,39.2612554972879,38.7302457746981,67.6246414038483,49.0799700107207,61.4829384321374,79.1132048362793,146.708766128277,183.036583494707,164.220669322078,131.047788084952,72.0379883821772,64.0685205949801,88.2549888058281,87.2464996053233,110.153045913957,95.0238009424522,76.6423813862074,95.2274214962183,73.122987275541,57.108773943121,51.7565543498476,87.0809817544298,91.4270382225663,81.8355564548642,74.2705291980716,114.339114563118,63.1855910369788,23.8759178830811,31.452240453311,25.292017780503,22.2955735874077,37.3538954095249,44.5141608456846,52.8812185694635,50.7585164021935,47.3934435848378,63.9413622316523,60.9571530742545,60.7851136167952,63.066989541539,28.6503439484617,17.4049818821987,63.4375912194557,58.4985902166033,43.3486592967038,35.749564410622,17.2131692645509,94.9290686288442,17.6684602873104,20.6932534477218,23.6965737506079,28.4372869563537,26.5130422158049,27.4584234865167,25.9078849071932,28.0565623594859,28.4607200121497,45.6276269318966,44.7111268406046,45.0505977278156,54.7300183428016,58.7293637782226,66.3725691699814,27.1914312493579,30.2323556964751,30.9312330799673,59.9462842547969,42.7334855642059,50.9103737541396,53.4394582331933,42.0666906493971,54.990395880832,61.1427929734993,50.5364161916116,47.6615448055303,26.4689808226026,40.6186267077849,31.5075441496441,50.7193068216902,50.3000065637839,49.3647061806363,78.8564218206812,80.2577241577889,127.946570801747,31.9766177179695,54.4124634706884,54.0905829431284,43.4253059482722,45.8389800972044,51.5402425199492,111.054198755973,48.766854428764,88.169374491692,35.292154421711,49.0765497529736,116.223337971894,129.586127879532,113.245195737229,13.4282959695146,13.7152423277185,16.1693969351176,58.2349076989219,32.8989433324381,38.630698754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| |||
|short_description=p1@Tpcn1 | |||
}} | |||
Revision as of 06:14, 14 September 2013
| Short description: | p1@Tpcn1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Tpcn1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -2bp_to_ENSMUST00000046426, NM_145853, uc008zhm.1, uc008zhn.1_5end |
| EntrezGene: | Tpcn1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 7.47e-09 | 118 |
| endoderm | 7.47e-09 | 118 |
| presumptive endoderm | 7.47e-09 | 118 |
| abdomen element | 1.30e-08 | 49 |
| abdominal segment element | 1.30e-08 | 49 |
| abdominal segment of trunk | 1.30e-08 | 49 |
| abdomen | 1.30e-08 | 49 |
| subdivision of digestive tract | 1.31e-08 | 114 |
| exocrine gland | 3.07e-08 | 25 |
| exocrine system | 3.07e-08 | 25 |
| digestive system | 3.82e-08 | 116 |
| digestive tract | 3.82e-08 | 116 |
| primitive gut | 3.82e-08 | 116 |
| digestive tract diverticulum | 6.89e-08 | 23 |
| sac | 6.89e-08 | 23 |
| liver | 2.53e-07 | 22 |
| epithelial sac | 2.53e-07 | 22 |
| digestive gland | 2.53e-07 | 22 |
| epithelium of foregut-midgut junction | 2.53e-07 | 22 |
| anatomical boundary | 2.53e-07 | 22 |
| hepatobiliary system | 2.53e-07 | 22 |
| foregut-midgut junction | 2.53e-07 | 22 |
| hepatic diverticulum | 2.53e-07 | 22 |
| liver primordium | 2.53e-07 | 22 |
| septum transversum | 2.53e-07 | 22 |
| liver bud | 2.53e-07 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
