FFCP PHASE1:Mm9::chr5:108948877..108948894,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=42|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:108948877..108948894,-|id=chr5:108948877..108948894,-|ontology_enrichment_celltype=CL:0000117!1.18e-09!23;CL:0000337!1.18e-09!23;CL:0002614!6.91e-08!3|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.59e-32!52;UBERON:0005068!2.59e-32!52;UBERON:0006241!2.59e-32!52;UBERON:0007135!2.59e-32!52;UBERON:0000955!1.51e-31!50;UBERON:0006238!1.51e-31!50;UBERON:0002616!1.26e-29!49;UBERON:0001017!7.43e-27!73;UBERON:0005743!7.43e-27!73;UBERON:0000073!6.18e-26!75;UBERON:0001016!6.18e-26!75;UBERON:0002020!4.78e-24!34;UBERON:0000033!1.37e-23!63;UBERON:0002346!1.71e-23!71;UBERON:0003075!1.71e-23!71;UBERON:0007284!1.71e-23!71;UBERON:0003080!1.39e-21!40;UBERON:0002791!1.43e-20!29;UBERON:0003528!1.43e-20!29;UBERON:0001893!1.43e-20!29;UBERON:0002780!6.40e-20!39;UBERON:0001890!6.40e-20!39;UBERON:0006240!6.40e-20!39;UBERON:0004121!2.20e-18!102;UBERON:0000924!2.20e-18!102;UBERON:0006601!2.20e-18!102;UBERON:0003056!1.28e-16!49;UBERON:0007811!2.05e-15!86;UBERON:0002021!6.96e-14!10;UBERON:0000411!6.96e-14!10;UBERON:0001950!6.96e-14!10;UBERON:0002298!8.75e-14!6;UBERON:0000153!1.63e-13!94;UBERON:0000956!5.96e-13!21;UBERON:0001869!5.96e-13!21;UBERON:0000203!5.96e-13!21;UBERON:0002619!1.37e-11!17;UBERON:0003076!3.12e-11!12;UBERON:0003057!3.12e-11!12;UBERON:0000025!7.27e-11!114;UBERON:0002950!5.21e-10!4;UBERON:0001891!5.21e-10!4;UBERON:0009616!5.21e-10!4;UBERON:0004111!1.08e-09!122;UBERON:0002420!4.37e-09!8;UBERON:0007245!4.37e-09!8;UBERON:0010009!4.37e-09!8;UBERON:0010011!4.37e-09!8;UBERON:0000454!4.37e-09!8;UBERON:0002038!6.91e-08!3;UBERON:0002308!6.91e-08!3;UBERON:0009663!6.91e-08!3;UBERON:0009661!6.91e-08!3;UBERON:0006331!6.91e-08!3;UBERON:0000125!6.91e-08!3;UBERON:0000064!2.60e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.42e-11,73;UBERON:0001016,2.99e-11,75;UBERON:0001049,2.09e-10,52;UBERON:0005068,2.09e-10,52;UBERON:0006241,2.09e-10,52;UBERON:0007135,2.09e-10,52;UBERON:0000073,4.96e-10,54;UBERON:0002259,1.03e-09,1;UBERON:0002314,1.03e-09,1;UBERON:0004061,1.03e-09,1;UBERON:0006777,1.03e-09,1;UBERON:0005882,1.03e-09,1;UBERON:0002950,1.04e-09,4;UBERON:0001891,1.04e-09,4;UBERON:0009616,1.04e-09,4;UBERON:0010286,1.04e-09,4;UBERON:0000955,5.80e-09,47;UBERON:0006238,5.80e-09,47;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0002346,2.27e-08,64;UBERON:0003075,2.27e-08,64;UBERON:0007284,2.27e-08,64;UBERON:0010371,2.83e-07,73;UBERON:0003076,3.34e-07,12;UBERON:0003057,3.34e-07,12;UBERON:0002616,8.74e-07,46|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210324961351382,1.14260393761521,0.662605622854841,0,0,0,0,0.893811366596314,1.38245879930619,0.131886287730194,0.0914876436024097,0,0.558365998002762,2.25105044012672,0.763991238884051,0,0.427115042397309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,10.2628886338593,0,0,0,0,1.04853447583376,0,0.125654352112864,0.347648640384553,0.255715457330331,1.24672826735736,0.162241263067758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.703270119553219,0,0,0,0,0,0,0,0,0,0,0,2.24924921495265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0.572895513439397,0.343706364687375,1.37016503954128,0.755393897389701,0,0.900642406448441,0.453142408984205,1.55328093525546,0,0,0.170733605754134,0.243106717068294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429742108096597,0.191288332068843,0,0|short_description=p@chr5:108948877..108948894,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=42 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:108948877..108948894,- | |||
|id=chr5:108948877..108948894,- | |||
|ontology_enrichment_celltype=CL:0000117!1.18e-09!23;CL:0000337!1.18e-09!23;CL:0002614!6.91e-08!3 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.59e-32!52;UBERON:0005068!2.59e-32!52;UBERON:0006241!2.59e-32!52;UBERON:0007135!2.59e-32!52;UBERON:0000955!1.51e-31!50;UBERON:0006238!1.51e-31!50;UBERON:0002616!1.26e-29!49;UBERON:0001017!7.43e-27!73;UBERON:0005743!7.43e-27!73;UBERON:0000073!6.18e-26!75;UBERON:0001016!6.18e-26!75;UBERON:0002020!4.78e-24!34;UBERON:0000033!1.37e-23!63;UBERON:0002346!1.71e-23!71;UBERON:0003075!1.71e-23!71;UBERON:0007284!1.71e-23!71;UBERON:0003080!1.39e-21!40;UBERON:0002791!1.43e-20!29;UBERON:0003528!1.43e-20!29;UBERON:0001893!1.43e-20!29;UBERON:0002780!6.40e-20!39;UBERON:0001890!6.40e-20!39;UBERON:0006240!6.40e-20!39;UBERON:0004121!2.20e-18!102;UBERON:0000924!2.20e-18!102;UBERON:0006601!2.20e-18!102;UBERON:0003056!1.28e-16!49;UBERON:0007811!2.05e-15!86;UBERON:0002021!6.96e-14!10;UBERON:0000411!6.96e-14!10;UBERON:0001950!6.96e-14!10;UBERON:0002298!8.75e-14!6;UBERON:0000153!1.63e-13!94;UBERON:0000956!5.96e-13!21;UBERON:0001869!5.96e-13!21;UBERON:0000203!5.96e-13!21;UBERON:0002619!1.37e-11!17;UBERON:0003076!3.12e-11!12;UBERON:0003057!3.12e-11!12;UBERON:0000025!7.27e-11!114;UBERON:0002950!5.21e-10!4;UBERON:0001891!5.21e-10!4;UBERON:0009616!5.21e-10!4;UBERON:0004111!1.08e-09!122;UBERON:0002420!4.37e-09!8;UBERON:0007245!4.37e-09!8;UBERON:0010009!4.37e-09!8;UBERON:0010011!4.37e-09!8;UBERON:0000454!4.37e-09!8;UBERON:0002038!6.91e-08!3;UBERON:0002308!6.91e-08!3;UBERON:0009663!6.91e-08!3;UBERON:0009661!6.91e-08!3;UBERON:0006331!6.91e-08!3;UBERON:0000125!6.91e-08!3;UBERON:0000064!2.60e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.42e-11,73;UBERON:0001016,2.99e-11,75;UBERON:0001049,2.09e-10,52;UBERON:0005068,2.09e-10,52;UBERON:0006241,2.09e-10,52;UBERON:0007135,2.09e-10,52;UBERON:0000073,4.96e-10,54;UBERON:0002259,1.03e-09,1;UBERON:0002314,1.03e-09,1;UBERON:0004061,1.03e-09,1;UBERON:0006777,1.03e-09,1;UBERON:0005882,1.03e-09,1;UBERON:0002950,1.04e-09,4;UBERON:0001891,1.04e-09,4;UBERON:0009616,1.04e-09,4;UBERON:0010286,1.04e-09,4;UBERON:0000955,5.80e-09,47;UBERON:0006238,5.80e-09,47;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0002346,2.27e-08,64;UBERON:0003075,2.27e-08,64;UBERON:0007284,2.27e-08,64;UBERON:0010371,2.83e-07,73;UBERON:0003076,3.34e-07,12;UBERON:0003057,3.34e-07,12;UBERON:0002616,8.74e-07,46 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210324961351382,1.14260393761521,0.662605622854841,0,0,0,0,0.893811366596314,1.38245879930619,0.131886287730194,0.0914876436024097,0,0.558365998002762,2.25105044012672,0.763991238884051,0,0.427115042397309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,10.2628886338593,0,0,0,0,1.04853447583376,0,0.125654352112864,0.347648640384553,0.255715457330331,1.24672826735736,0.162241263067758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.703270119553219,0,0,0,0,0,0,0,0,0,0,0,2.24924921495265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0.572895513439397,0.343706364687375,1.37016503954128,0.755393897389701,0,0.900642406448441,0.453142408984205,1.55328093525546,0,0,0.170733605754134,0.243106717068294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429742108096597,0.191288332068843,0,0 | |||
|short_description=p@chr5:108948877..108948894,- | |||
}} |
Revision as of 05:53, 14 September 2013
Short description: | p@chr5:108948877..108948894, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:108948877..108948894, - |
Coexpression cluster: | MCL_coexpression_mm9:42 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.42e-11 | 73 |
nervous system | 2.99e-11 | 75 |
neural tube | 2.09e-10 | 52 |
neural rod | 2.09e-10 | 52 |
future spinal cord | 2.09e-10 | 52 |
neural keel | 2.09e-10 | 52 |
regional part of nervous system | 4.96e-10 | 54 |
corpora quadrigemina | 1.03e-09 | 1 |
midbrain tectum | 1.03e-09 | 1 |
neural tube mantle layer | 1.03e-09 | 1 |
tectal plate | 1.03e-09 | 1 |
neural tube alar plate | 1.03e-09 | 1 |
regional part of midbrain | 1.04e-09 | 4 |
midbrain | 1.04e-09 | 4 |
presumptive midbrain | 1.04e-09 | 4 |
midbrain neural tube | 1.04e-09 | 4 |
brain | 5.80e-09 | 47 |
future brain | 5.80e-09 | 47 |
ectoderm-derived structure | 9.21e-09 | 95 |
ectoderm | 9.21e-09 | 95 |
presumptive ectoderm | 9.21e-09 | 95 |
neurectoderm | 2.27e-08 | 64 |
neural plate | 2.27e-08 | 64 |
presumptive neural plate | 2.27e-08 | 64 |
ecto-epithelium | 2.83e-07 | 73 |
posterior neural tube | 3.34e-07 | 12 |
chordal neural plate | 3.34e-07 | 12 |
regional part of brain | 8.74e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.