FFCP PHASE1:Mm9::chr4:88940410..88940415,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12578|HGNC=|MCL_coexpression_id=1786|UniProt=P51480|association_with_transcript=141bp_to_ENSMUST00000107131_5end|description=CAGE_peak_6_at_Cdkn2a_5end|id=chr4:88940410..88940415,-|ontology_enrichment_celltype=CL:0000192!5.07e-12!3;CL:0000359!5.07e-12!3;CL:0002539!5.07e-12!3;CL:0000514!5.07e-12!3;CL:0000349!3.51e-11!3;CL:0000351!3.51e-11!3;CL:0000680!1.81e-10!6;CL:0000183!1.81e-10!6;CL:0000187!1.81e-10!6;CL:0000056!1.81e-10!6;CL:0000708!2.55e-09!2;CL:0000864!5.24e-09!2;CL:0000878!5.24e-09!2;CL:0000129!5.24e-09!2;CL:0000222!5.51e-09!7;CL:0000055!1.98e-07!50;CL:0000034!3.62e-07!97;CL:0000355!5.30e-07!9;CL:0000107!5.91e-07!9|ontology_enrichment_celltype_v019_2=CL:0000708,1.68e-58,2;CL:0000151,1.70e-39,3;CL:0000499,1.70e-39,3;CL:0000327,1.70e-39,3;CL:0000192,7.15e-11,3;CL:0000359,7.15e-11,3;CL:0002539,7.15e-11,3;CL:0000514,7.15e-11,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001135!5.07e-12!3;UBERON:0004237!5.07e-12!3;UBERON:0004695!5.07e-12!3;UBERON:0002111!5.07e-12!3;UBERON:0004178!5.07e-12!3;UBERON:0000358!3.51e-11!3;UBERON:0000307!3.51e-11!3;UBERON:0003210!2.55e-09!2;UBERON:0000947!3.92e-09!4;UBERON:0001637!3.92e-09!4;UBERON:0003509!3.92e-09!4;UBERON:0004573!3.92e-09!4;UBERON:0004571!3.92e-09!4;UBERON:0010191!3.92e-09!4;UBERON:0004572!3.92e-09!4;UBERON:0000473!8.51e-09!14;UBERON:0003135!3.55e-08!15;UBERON:0003101!1.24e-07!16;UBERON:0000079!1.24e-07!16;UBERON:0000055!2.16e-07!5;UBERON:0001981!2.16e-07!5;UBERON:0002049!2.16e-07!5;UBERON:0007500!2.16e-07!5;UBERON:0007798!2.16e-07!5;UBERON:0004537!2.16e-07!5;UBERON:0006965!2.16e-07!5;UBERON:0004176!3.74e-07!17;UBERON:0009196!3.74e-07!17;UBERON:0009117!3.74e-07!17;UBERON:0001134!5.30e-07!9;UBERON:0002036!5.30e-07!9;UBERON:0002385!5.30e-07!9;UBERON:0000486!5.30e-07!9;UBERON:0001015!5.30e-07!9;UBERON:0004290!5.30e-07!9;UBERON:0003082!5.30e-07!9;UBERON:0002410!5.91e-07!9;UBERON:0000991!1.00e-06!18;UBERON:0005564!1.00e-06!18|ontology_enrichment_uberon_v019_2=UBERON:0003210,1.68e-58,2;UBERON:0001135,7.15e-11,3;UBERON:0004237,7.15e-11,3;UBERON:0004695,7.15e-11,3;UBERON:0002111,7.15e-11,3;UBERON:0004178,7.15e-11,3;UBERON:0000947,1.73e-08,4;UBERON:0001637,1.73e-08,4;UBERON:0004573,1.73e-08,4;UBERON:0003509,1.73e-08,4;UBERON:0004571,1.73e-08,4;UBERON:0010191,1.73e-08,4;UBERON:0004572,1.73e-08,4;UBERON:0000055,4.77e-07,5;UBERON:0007500,4.77e-07,5;UBERON:0001981,4.77e-07,5;UBERON:0002049,4.77e-07,5;UBERON:0007798,4.77e-07,5;UBERON:0004537,4.77e-07,5;UBERON:0006965,4.77e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.101376931219515,1.10128051297009,0,0,0,0.388859798148567,0,0,0,0,0,0,0,0.515672092277442,0,0,0,9.82649143000483,1.77858959222228,0.449949858640699,0,0,0.599200221036809,0.768436610643109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215423397732799,0.955875191810208,0.222798674082394,0,0,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0.165458490457098,0,0.258319646955462,0,0,0.13020438484395,0.209718688851422,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0.0897138566094757,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p6@Cdkn2a}} | ||
|EntrezGene=12578 | |||
|HGNC= | |||
|MCL_coexpression_id=1786 | |||
|UniProt=P51480 | |||
|association_with_transcript=141bp_to_ENSMUST00000107131_5end | |||
|description=CAGE_peak_6_at_Cdkn2a_5end | |||
|id=chr4:88940410..88940415,- | |||
|ontology_enrichment_celltype=CL:0000192!5.07e-12!3;CL:0000359!5.07e-12!3;CL:0002539!5.07e-12!3;CL:0000514!5.07e-12!3;CL:0000349!3.51e-11!3;CL:0000351!3.51e-11!3;CL:0000680!1.81e-10!6;CL:0000183!1.81e-10!6;CL:0000187!1.81e-10!6;CL:0000056!1.81e-10!6;CL:0000708!2.55e-09!2;CL:0000864!5.24e-09!2;CL:0000878!5.24e-09!2;CL:0000129!5.24e-09!2;CL:0000222!5.51e-09!7;CL:0000055!1.98e-07!50;CL:0000034!3.62e-07!97;CL:0000355!5.30e-07!9;CL:0000107!5.91e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000708,1.68e-58,2;CL:0000151,1.70e-39,3;CL:0000499,1.70e-39,3;CL:0000327,1.70e-39,3;CL:0000192,7.15e-11,3;CL:0000359,7.15e-11,3;CL:0002539,7.15e-11,3;CL:0000514,7.15e-11,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001135!5.07e-12!3;UBERON:0004237!5.07e-12!3;UBERON:0004695!5.07e-12!3;UBERON:0002111!5.07e-12!3;UBERON:0004178!5.07e-12!3;UBERON:0000358!3.51e-11!3;UBERON:0000307!3.51e-11!3;UBERON:0003210!2.55e-09!2;UBERON:0000947!3.92e-09!4;UBERON:0001637!3.92e-09!4;UBERON:0003509!3.92e-09!4;UBERON:0004573!3.92e-09!4;UBERON:0004571!3.92e-09!4;UBERON:0010191!3.92e-09!4;UBERON:0004572!3.92e-09!4;UBERON:0000473!8.51e-09!14;UBERON:0003135!3.55e-08!15;UBERON:0003101!1.24e-07!16;UBERON:0000079!1.24e-07!16;UBERON:0000055!2.16e-07!5;UBERON:0001981!2.16e-07!5;UBERON:0002049!2.16e-07!5;UBERON:0007500!2.16e-07!5;UBERON:0007798!2.16e-07!5;UBERON:0004537!2.16e-07!5;UBERON:0006965!2.16e-07!5;UBERON:0004176!3.74e-07!17;UBERON:0009196!3.74e-07!17;UBERON:0009117!3.74e-07!17;UBERON:0001134!5.30e-07!9;UBERON:0002036!5.30e-07!9;UBERON:0002385!5.30e-07!9;UBERON:0000486!5.30e-07!9;UBERON:0001015!5.30e-07!9;UBERON:0004290!5.30e-07!9;UBERON:0003082!5.30e-07!9;UBERON:0002410!5.91e-07!9;UBERON:0000991!1.00e-06!18;UBERON:0005564!1.00e-06!18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003210,1.68e-58,2;UBERON:0001135,7.15e-11,3;UBERON:0004237,7.15e-11,3;UBERON:0004695,7.15e-11,3;UBERON:0002111,7.15e-11,3;UBERON:0004178,7.15e-11,3;UBERON:0000947,1.73e-08,4;UBERON:0001637,1.73e-08,4;UBERON:0004573,1.73e-08,4;UBERON:0003509,1.73e-08,4;UBERON:0004571,1.73e-08,4;UBERON:0010191,1.73e-08,4;UBERON:0004572,1.73e-08,4;UBERON:0000055,4.77e-07,5;UBERON:0007500,4.77e-07,5;UBERON:0001981,4.77e-07,5;UBERON:0002049,4.77e-07,5;UBERON:0007798,4.77e-07,5;UBERON:0004537,4.77e-07,5;UBERON:0006965,4.77e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.101376931219515,1.10128051297009,0,0,0,0.388859798148567,0,0,0,0,0,0,0,0.515672092277442,0,0,0,9.82649143000483,1.77858959222228,0.449949858640699,0,0,0.599200221036809,0.768436610643109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215423397732799,0.955875191810208,0.222798674082394,0,0,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0.165458490457098,0,0.258319646955462,0,0,0.13020438484395,0.209718688851422,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0.0897138566094757,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p6@Cdkn2a | |||
}} |
Revision as of 05:35, 14 September 2013
Short description: | p6@Cdkn2a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Cdkn2a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1786 |
Association with transcript: | 141bp_to_ENSMUST00000107131_5end |
EntrezGene: | Cdkn2a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leptomeningeal cell | 1.68e-58 | 2 |
secretory cell | 1.70e-39 | 3 |
stromal cell | 1.70e-39 | 3 |
extracellular matrix secreting cell | 1.70e-39 | 3 |
smooth muscle cell | 7.15e-11 | 3 |
vascular associated smooth muscle cell | 7.15e-11 | 3 |
aortic smooth muscle cell | 7.15e-11 | 3 |
smooth muscle myoblast | 7.15e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
blood-cerebrospinal fluid barrier | 1.68e-58 | 2 |
smooth muscle tissue | 7.15e-11 | 3 |
blood vessel smooth muscle | 7.15e-11 | 3 |
arterial system smooth muscle | 7.15e-11 | 3 |
artery smooth muscle tissue | 7.15e-11 | 3 |
aorta smooth muscle tissue | 7.15e-11 | 3 |
aorta | 1.73e-08 | 4 |
artery | 1.73e-08 | 4 |
systemic artery | 1.73e-08 | 4 |
arterial blood vessel | 1.73e-08 | 4 |
systemic arterial system | 1.73e-08 | 4 |
aortic system | 1.73e-08 | 4 |
arterial system | 1.73e-08 | 4 |
vessel | 4.77e-07 | 5 |
epithelial tube open at both ends | 4.77e-07 | 5 |
blood vessel | 4.77e-07 | 5 |
vasculature | 4.77e-07 | 5 |
vascular system | 4.77e-07 | 5 |
blood vasculature | 4.77e-07 | 5 |
vascular cord | 4.77e-07 | 5 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.