FFCP PHASE1:Hg19::chr8:38261837..38261848,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=137994|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14648|TSSclassifier=S|UniProt=|association_with_transcript=-9bp_to_ENST00000530448_5end|coexpression_cluster_id=C2011|description=CAGE_peak_6_at_LETM2_5end|id=chr8:38261837..38261848,+|ontology_enrichment_celltype=CL:0000066!4.63e-29!254;CL:0000548!6.18e-18!679;CL:0000004!6.18e-18!679;CL:0000255!6.18e-18!679;CL:0000012!1.86e-17!682;CL:0000220!2.10e-17!246;CL:0002321!6.19e-17!248;CL:0000076!6.30e-15!62;CL:0000003!1.16e-13!722;CL:0000063!4.63e-13!578;CL:0000077!4.96e-11!19;CL:0000213!4.75e-10!57;CL:0000215!4.75e-10!57;CL:0000222!6.88e-10!119;CL:0000144!1.45e-09!625;CL:0002076!3.48e-09!43;CL:0002368!1.55e-08!13;CL:0000223!4.21e-07!59|ontology_enrichment_celltype_v019=CL:0000077;2.77e-16;19!CL:0002368;1.50e-12;13!CL:0002202;1.81e-09;9!CL:0002632;1.81e-09;9!CL:0002076;2.74e-09;42!CL:0000076;3.26e-07;63!CL:0002621;6.65e-07;3!CL:0000307;8.97e-07;3|ontology_enrichment_celltype_v019_2=CL:0000066,4.51e-18,253;CL:0000077,5.60e-17,19;CL:0002368,1.46e-12,13;CL:0002321,2.20e-12,250;CL:0000076,3.63e-12,63;CL:0002076,4.28e-12,42;CL:0002202,1.92e-09,9;CL:0002632,1.92e-09,9;CL:0000223,3.71e-08,58;CL:0002621,7.62e-07,3;CL:0000068,9.06e-07,3;CL:0000069,9.06e-07,3;CL:0000307,9.06e-07,3;CL:0000377,9.06e-07,3|ontology_enrichment_development_v019=CL:0000377;8.97e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!1.07e-07!95|ontology_enrichment_uberon_v019=UBERON:0001949;6.65e-07;3!UBERON:0004807;6.90e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0001949,7.62e-07,3|phase1_expression=0,0.214100523890983,0,0,0,0,0,0.631719873426831,0,0.982935746006035,0.697801167972428,0.655324116390517,0.263766978228454,0,0,1.34465029290355,0,0.730310090387373,0,0.123121058076788,0.612002073732759,0,0,0.273748850145768,0,0,0,0,0,0,0,3.67768489791571,2.10844143144775,1.47901604066715,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445641827540694,0,0,0,1.0247305578054,0.520237390239513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0.973269740605272,0.378139268656271,0.221729397462564,0.263504357079378,0,0,0.741568885568859,0,0,0,0,0,0,0.596287222100115,0.860234595106124,1.04142150482278,0,0.419499436209906,0.550236083880135,0.835979866147242,0,1.06729878806013,0,0.402829317109147,0,0.24406205754817,0.735326160691737,0,0.446498641420399,0.44905874525234,0.450445921933289,1.53316637465883,0,0,0,0,0.872188104285069,0,0,0.264818361626438,0,0,0.560677600142307,0,0.49333509683432,0,0.808264032418128,0.163461903113459,0,0.576175924479999,1.64025002283658,0.312160076830321,1.1409436430889,0.298897361103602,0.587172493218824,0.323745888736263,1.40450806702248,0.204154171254893,0.982674538494144,0.103325781175765,0,0,0,0.718618141816238,0.841680569770331,0.625592599359821,1.10825646193673,0.438977620880838,0,0,0.907457465280168,0.717558542755448,0.213557388818567,0,0.300091096084402,0,0.515281080091258,0,0.168776332241266,0,0.252433774244115,0.0920498986422993,0.161646056818812,0.355009592516614,0.403008392910561,0.508681776931463,4.63826047591912,6.54590689418003,2.00763216772303,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0,0.110293972732394,0,0.237270619111097,0.404493924480493,0.196221465125346,0,0,0,0,0,0,0,0.590789906681404,0,0,1.20097467208968,3.51200913307602,2.24803506515239,0,2.40729957412177,0.325808305310325,3.11980435583874,1.44331342025273,0,0.352226082707465,0.721832238805369,1.85194205030644,0.190254152234598,0,0,0,0,0,7.49870671894216,1.51183915378974,3.96970272278682,3.40322386270824,1.74380363108377,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0.560655421726804,0,1.10007428731425,0.258543431515556,0,1.690605505112,0,0,0.771622122786426,1.41849132023278,1.3321108950805,0,0,0,1.95441710576241,0,0.791951872933429,1.80863626235752,1.74306691720059,2.69927076191554,0,0,0,0,1.14861935834114,1.42636905040718,0.434343920002738,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0.813795071099207,0,0.178428988797162,0.157702415033935,0.117141414992713,0,0,0,1.99267679560631,0.553107505625109,0.347534457872331,0,0,0,0,0,0.606255142892519,1.66435439510497,0.30239029332968,0.248107807818777,0.153461973288062,0,0,0,0,0,0.462629081407967,0.355123450626254,1.06765302817952,2.07701771673448,0.581051892299796,0,2.6065841139427,1.56537681191024,0.34444334449382,1.27463817604702,0,0.451199612907412,0.539107359730903,0,0,0.211103257785751,0,0.340187410553031,0.647747748306418,1.54227252690289,0.812839312631559,0.501689773854853,0.764628819135115,0.831076008928724,0.671624264166535,0,0,0.256450125116389,0,0.325378394664303,0,0,0,2.87132768998086,3.25030123018261,0,0,0.462145851343933,0.307007349452259,1.37836572484531,0.107420244868274,0,0.2556798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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=137994 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14648 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-9bp_to_ENST00000530448_5end | |||
|coexpression_cluster_id=C2011 | |||
|description=CAGE_peak_6_at_LETM2_5end | |||
|id=chr8:38261837..38261848,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.63e-29!254;CL:0000548!6.18e-18!679;CL:0000004!6.18e-18!679;CL:0000255!6.18e-18!679;CL:0000012!1.86e-17!682;CL:0000220!2.10e-17!246;CL:0002321!6.19e-17!248;CL:0000076!6.30e-15!62;CL:0000003!1.16e-13!722;CL:0000063!4.63e-13!578;CL:0000077!4.96e-11!19;CL:0000213!4.75e-10!57;CL:0000215!4.75e-10!57;CL:0000222!6.88e-10!119;CL:0000144!1.45e-09!625;CL:0002076!3.48e-09!43;CL:0002368!1.55e-08!13;CL:0000223!4.21e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000077;2.77e-16;19!CL:0002368;1.50e-12;13!CL:0002202;1.81e-09;9!CL:0002632;1.81e-09;9!CL:0002076;2.74e-09;42!CL:0000076;3.26e-07;63!CL:0002621;6.65e-07;3!CL:0000307;8.97e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.51e-18,253;CL:0000077,5.60e-17,19;CL:0002368,1.46e-12,13;CL:0002321,2.20e-12,250;CL:0000076,3.63e-12,63;CL:0002076,4.28e-12,42;CL:0002202,1.92e-09,9;CL:0002632,1.92e-09,9;CL:0000223,3.71e-08,58;CL:0002621,7.62e-07,3;CL:0000068,9.06e-07,3;CL:0000069,9.06e-07,3;CL:0000307,9.06e-07,3;CL:0000377,9.06e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000377;8.97e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.07e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;6.65e-07;3!UBERON:0004807;6.90e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,7.62e-07,3 | |||
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| |||
|short_description=p6@LETM2 | |||
}} |
Revision as of 05:12, 14 September 2013
Short description: | p6@LETM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_LETM2_5end |
Coexpression cluster: | C2011_mucinous_mesothelioma_squamous_glioblastoma_anaplastic_Mallassezderived_amniotic |
Association with transcript: | -9bp_to_ENST00000530448_5end |
EntrezGene: | LETM2 |
HGNC: | 14648 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.51e-18 | 253 |
mesothelial cell | 5.60e-17 | 19 |
respiratory epithelial cell | 1.46e-12 | 13 |
embryonic cell | 2.20e-12 | 250 |
squamous epithelial cell | 3.63e-12 | 63 |
endo-epithelial cell | 4.28e-12 | 42 |
epithelial cell of tracheobronchial tree | 1.92e-09 | 9 |
epithelial cell of lower respiratory tract | 1.92e-09 | 9 |
endodermal cell | 3.71e-08 | 58 |
gingival epithelial cell | 7.62e-07 | 3 |
duct epithelial cell | 9.06e-07 | 3 |
branched duct epithelial cell | 9.06e-07 | 3 |
tracheal epithelial cell | 9.06e-07 | 3 |
tracheoblast | 9.06e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 7.62e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.