FFCP PHASE1:Mm9::chr4:154010228..154010244,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=70673|HGNC=|UniProt=Q3UR05|association_with_transcript=230bp_to_uc008wby.1_5end|description=CAGE_peak_4_at_Prdm16_5end|id=chr4:154010228..154010244,-|ontology_enrichment_celltype=CL:0000221!1.09e-14!44;CL:0000133!1.09e-14!44;CL:0002319!5.51e-14!43;CL:0000117!3.87e-11!23;CL:0000337!3.87e-11!23;CL:0000540!5.11e-10!33;CL:0000047!5.11e-10!33;CL:0000031!5.11e-10!33;CL:0000404!5.11e-10!33;CL:0000055!9.24e-10!50;CL:0000393!8.36e-07!39;CL:0000211!8.36e-07!39|ontology_enrichment_celltype_v019_2=CL:0000221,1.42e-17,44;CL:0000133,1.42e-17,44;CL:0002319,1.29e-16,43;CL:0000117,1.37e-13,23;CL:0000337,1.37e-13,23;CL:0000540,8.71e-11,33;CL:0000047,8.71e-11,33;CL:0000031,8.71e-11,33;CL:0000404,8.71e-11,33;CL:0000393,6.37e-08,39;CL:0000211,6.37e-08,39;CL:0000333,3.01e-07,10;CL:0000095,3.01e-07,10;CL:0000243,3.01e-07,10;CL:0000123,3.01e-07,10;CL:0000125,3.01e-07,10;CL:0000030,3.01e-07,10;CL:0000339,3.01e-07,10;CL:0002453,6.96e-07,8;CL:0002321,7.70e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.20e-17!75;UBERON:0001016!2.20e-17!75;UBERON:0001017!6.93e-17!73;UBERON:0005743!6.93e-17!73;UBERON:0004121!2.66e-15!102;UBERON:0000924!2.66e-15!102;UBERON:0006601!2.66e-15!102;UBERON:0000033!1.95e-13!63;UBERON:0003056!3.24e-13!49;UBERON:0001049!3.75e-12!52;UBERON:0005068!3.75e-12!52;UBERON:0006241!3.75e-12!52;UBERON:0007135!3.75e-12!52;UBERON:0002020!1.87e-11!34;UBERON:0003080!1.89e-11!40;UBERON:0002780!2.84e-11!39;UBERON:0001890!2.84e-11!39;UBERON:0006240!2.84e-11!39;UBERON:0000955!3.36e-11!50;UBERON:0006238!3.36e-11!50;UBERON:0002346!4.85e-11!71;UBERON:0003075!4.85e-11!71;UBERON:0007284!4.85e-11!71;UBERON:0002616!9.72e-11!49;UBERON:0002791!1.03e-08!29;UBERON:0003528!1.03e-08!29;UBERON:0001893!1.03e-08!29;UBERON:0000025!7.81e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.12e-21,75;UBERON:0001017,2.55e-20,73;UBERON:0004121,7.35e-20,95;UBERON:0000924,7.35e-20,95;UBERON:0006601,7.35e-20,95;UBERON:0003056,1.32e-16,49;UBERON:0000073,1.63e-16,54;UBERON:0002346,2.17e-16,64;UBERON:0003075,2.17e-16,64;UBERON:0007284,2.17e-16,64;UBERON:0010314,3.19e-16,92;UBERON:0001049,1.22e-15,52;UBERON:0005068,1.22e-15,52;UBERON:0006241,1.22e-15,52;UBERON:0007135,1.22e-15,52;UBERON:0010371,7.61e-15,73;UBERON:0002020,9.24e-15,34;UBERON:0003080,1.76e-14,40;UBERON:0002780,3.18e-14,39;UBERON:0001890,3.18e-14,39;UBERON:0006240,3.18e-14,39;UBERON:0000955,3.75e-13,47;UBERON:0006238,3.75e-13,47;UBERON:0002616,1.61e-12,46;UBERON:0003528,6.61e-11,29;UBERON:0002791,6.61e-11,29;UBERON:0001893,6.61e-11,29;UBERON:0000025,2.71e-08,114;UBERON:0004111,3.83e-08,122;UBERON:0000956,8.62e-08,21;UBERON:0001869,8.62e-08,21;UBERON:0000203,8.62e-08,21;UBERON:0001954,4.13e-07,7;UBERON:0003022,4.13e-07,7;UBERON:0002421,4.13e-07,7;UBERON:0000349,4.13e-07,7;UBERON:0002600,4.13e-07,7|phase1_expression=5.12476310735341,0,0,0,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0.332469290716985,0,0,0,0,0,0,0,0,0,0,0,12.4274339136855,3.29529274101708,12.0546537426056,5.73944328663986,4.31257693094915,0,0,0,0,0,0.515672092277442,3.03474691289397,1.05798195854407,3.80298842103708,0.338844532069132,0.889294796111139,0,0,0.7104801149461,4.79360176829448,5.37905627450176,3.83651565541367,4.45519596494579,2.94454945891935,3.14216082844184,5.30084498283872,3.1847607795888,3.35459148563827,6.43453150627015,2.20231761998777,1.0214987046815,0.614426133024974,2.1101806036831,1.73826522844578,2.08365348222704,1.11673199600552,2.8138130501584,0.916789486660861,4.71405736757868,4.12877874317399,2.23679334990361,1.13589289999776,1.13357340160178,0.289864488701678,0,0,0,0,0,0.421333260395256,0,0,0,21.8307300653855,0,0,0,0,0,0,0.22836775943812,0,0,0.693941307064543,0.608930956624282,0.691846491768175,0.301445281105245,0.587943535678524,0,0,1.44599356919912,0,0.485300549842228,0.220841518460394,0,0,0,0.209446706813455,0,0.11981512450592,0,0.127070227073065,1.04853447583376,3.20250421973039,2.01046963380583,1.73824320192276,2.30143911597297,1.45451631191692,0.811206315338788,0.203678727700633,0.622034853050465,1.51633655060205,0,4.68433594665733,1.37941262660084,2.16074555766419,0.90422890701429,1.83698547708585,1.7935920839879,1.03071897015702,1.03481348295606,12.0718076042392,6.99692496620931,5.27853372491847,2.84954452155847,2.50242524303038,0.348252166522167,0.205782136407943,0.398068533636986,0,0,0,2.69263504296152,3.51789089971644,1.08037236876609,1.42046841351126,1.77087808572663,1.3884040159864,1.39520366850245,0.536546802799238,1.98501082024188,2.30383789878873,0.492502392237286,0.729619285912702,0.877199924551994,1.97595103761946,0.536825675041487,1.47202963994889,4.32199371992995,0,0,0.213288250535234,0.928946687441754,0.38660238396628,0,0.667134131534611,0.190225626112559,0.474529061544512,0.329397909448022,0,0,0.38992817423824,0,0,0,2.84501851429623,2.28497025219458,2.25415471346161,1.4255592949172,1.16371492300575,2.4547536961611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| ||
|EntrezGene=70673 | |||
|HGNC= | |||
|UniProt=Q3UR05 | |||
|association_with_transcript=230bp_to_uc008wby.1_5end | |||
|description=CAGE_peak_4_at_Prdm16_5end | |||
|id=chr4:154010228..154010244,- | |||
|ontology_enrichment_celltype=CL:0000221!1.09e-14!44;CL:0000133!1.09e-14!44;CL:0002319!5.51e-14!43;CL:0000117!3.87e-11!23;CL:0000337!3.87e-11!23;CL:0000540!5.11e-10!33;CL:0000047!5.11e-10!33;CL:0000031!5.11e-10!33;CL:0000404!5.11e-10!33;CL:0000055!9.24e-10!50;CL:0000393!8.36e-07!39;CL:0000211!8.36e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.42e-17,44;CL:0000133,1.42e-17,44;CL:0002319,1.29e-16,43;CL:0000117,1.37e-13,23;CL:0000337,1.37e-13,23;CL:0000540,8.71e-11,33;CL:0000047,8.71e-11,33;CL:0000031,8.71e-11,33;CL:0000404,8.71e-11,33;CL:0000393,6.37e-08,39;CL:0000211,6.37e-08,39;CL:0000333,3.01e-07,10;CL:0000095,3.01e-07,10;CL:0000243,3.01e-07,10;CL:0000123,3.01e-07,10;CL:0000125,3.01e-07,10;CL:0000030,3.01e-07,10;CL:0000339,3.01e-07,10;CL:0002453,6.96e-07,8;CL:0002321,7.70e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.20e-17!75;UBERON:0001016!2.20e-17!75;UBERON:0001017!6.93e-17!73;UBERON:0005743!6.93e-17!73;UBERON:0004121!2.66e-15!102;UBERON:0000924!2.66e-15!102;UBERON:0006601!2.66e-15!102;UBERON:0000033!1.95e-13!63;UBERON:0003056!3.24e-13!49;UBERON:0001049!3.75e-12!52;UBERON:0005068!3.75e-12!52;UBERON:0006241!3.75e-12!52;UBERON:0007135!3.75e-12!52;UBERON:0002020!1.87e-11!34;UBERON:0003080!1.89e-11!40;UBERON:0002780!2.84e-11!39;UBERON:0001890!2.84e-11!39;UBERON:0006240!2.84e-11!39;UBERON:0000955!3.36e-11!50;UBERON:0006238!3.36e-11!50;UBERON:0002346!4.85e-11!71;UBERON:0003075!4.85e-11!71;UBERON:0007284!4.85e-11!71;UBERON:0002616!9.72e-11!49;UBERON:0002791!1.03e-08!29;UBERON:0003528!1.03e-08!29;UBERON:0001893!1.03e-08!29;UBERON:0000025!7.81e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.12e-21,75;UBERON:0001017,2.55e-20,73;UBERON:0004121,7.35e-20,95;UBERON:0000924,7.35e-20,95;UBERON:0006601,7.35e-20,95;UBERON:0003056,1.32e-16,49;UBERON:0000073,1.63e-16,54;UBERON:0002346,2.17e-16,64;UBERON:0003075,2.17e-16,64;UBERON:0007284,2.17e-16,64;UBERON:0010314,3.19e-16,92;UBERON:0001049,1.22e-15,52;UBERON:0005068,1.22e-15,52;UBERON:0006241,1.22e-15,52;UBERON:0007135,1.22e-15,52;UBERON:0010371,7.61e-15,73;UBERON:0002020,9.24e-15,34;UBERON:0003080,1.76e-14,40;UBERON:0002780,3.18e-14,39;UBERON:0001890,3.18e-14,39;UBERON:0006240,3.18e-14,39;UBERON:0000955,3.75e-13,47;UBERON:0006238,3.75e-13,47;UBERON:0002616,1.61e-12,46;UBERON:0003528,6.61e-11,29;UBERON:0002791,6.61e-11,29;UBERON:0001893,6.61e-11,29;UBERON:0000025,2.71e-08,114;UBERON:0004111,3.83e-08,122;UBERON:0000956,8.62e-08,21;UBERON:0001869,8.62e-08,21;UBERON:0000203,8.62e-08,21;UBERON:0001954,4.13e-07,7;UBERON:0003022,4.13e-07,7;UBERON:0002421,4.13e-07,7;UBERON:0000349,4.13e-07,7;UBERON:0002600,4.13e-07,7 | |||
|phase1_expression=5.12476310735341,0,0,0,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0.332469290716985,0,0,0,0,0,0,0,0,0,0,0,12.4274339136855,3.29529274101708,12.0546537426056,5.73944328663986,4.31257693094915,0,0,0,0,0,0.515672092277442,3.03474691289397,1.05798195854407,3.80298842103708,0.338844532069132,0.889294796111139,0,0,0.7104801149461,4.79360176829448,5.37905627450176,3.83651565541367,4.45519596494579,2.94454945891935,3.14216082844184,5.30084498283872,3.1847607795888,3.35459148563827,6.43453150627015,2.20231761998777,1.0214987046815,0.614426133024974,2.1101806036831,1.73826522844578,2.08365348222704,1.11673199600552,2.8138130501584,0.916789486660861,4.71405736757868,4.12877874317399,2.23679334990361,1.13589289999776,1.13357340160178,0.289864488701678,0,0,0,0,0,0.421333260395256,0,0,0,21.8307300653855,0,0,0,0,0,0,0.22836775943812,0,0,0.693941307064543,0.608930956624282,0.691846491768175,0.301445281105245,0.587943535678524,0,0,1.44599356919912,0,0.485300549842228,0.220841518460394,0,0,0,0.209446706813455,0,0.11981512450592,0,0.127070227073065,1.04853447583376,3.20250421973039,2.01046963380583,1.73824320192276,2.30143911597297,1.45451631191692,0.811206315338788,0.203678727700633,0.622034853050465,1.51633655060205,0,4.68433594665733,1.37941262660084,2.16074555766419,0.90422890701429,1.83698547708585,1.7935920839879,1.03071897015702,1.03481348295606,12.0718076042392,6.99692496620931,5.27853372491847,2.84954452155847,2.50242524303038,0.348252166522167,0.205782136407943,0.398068533636986,0,0,0,2.69263504296152,3.51789089971644,1.08037236876609,1.42046841351126,1.77087808572663,1.3884040159864,1.39520366850245,0.536546802799238,1.98501082024188,2.30383789878873,0.492502392237286,0.729619285912702,0.877199924551994,1.97595103761946,0.536825675041487,1.47202963994889,4.32199371992995,0,0,0.213288250535234,0.928946687441754,0.38660238396628,0,0.667134131534611,0.190225626112559,0.474529061544512,0.329397909448022,0,0,0.38992817423824,0,0,0,2.84501851429623,2.28497025219458,2.25415471346161,1.4255592949172,1.16371492300575,2.45475369616115,1.58091342810643,0.442830443938806,1.09899109488962,0.740382983530803,0,0.500535317148282,0,0.224862112384854,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.369506380333209,2.08440552947533,0.977789858652155,1.01847051465113,1.17345124144251,1.00503754465089,1.42826184531608,0.975668239288994,0.315270288212382,0.44292937929755,1.11618338060241,0.491589944147214,0.172684981865896,0.144649058581512,0,0,0,0,0.642202359951168,0.234423373184406,0,0,0,0,0,2.62865677747807,0.891194696329576,2.83076530788832,0.809621403349789,0.584511715822624,0.790575555893047,2.57057053137446,0,0.178065603667255,0.81443479676788,0,0,0.971122544619926,1.209294227859,1.50884063804718,1.18120757152309,0,0.516856586336442,1.45413491791002,0.356497378384721,0.632073515871632,0,0,0,3.42116078659489,4.01011919726539,2.14337035031592,1.95074257006501,1.78368817602071,2.13913726782757,1.522324745573,0,0,0.220528398054962,0.16488625294148,0.322928853391811,0.361877549568935,0.358117032009409,0,0.874442509889552,0,0,4.54051109519089,1.85194527369712,0.188368457004691,0,0,0.339956859987711,0.139951452323658,0.276399947608848,0,1.26534397432454,1.82987520414164,0.648032044930808,0.836353184057875,1.31017538247707,0.944050424693745,0.826534557253359,0.785267825952089,0,0,0,0,0,0.194451188344048,0,0.168956125490778,0.117357238645754,0,0,0,0,0,0.810900861160657,0.410843828659309,0,0,0.198681354781265,0,0,0,0.15241361331,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,0,0.920650473014354,0,1.89038500578056,2.05524755931193,0,1.35004500046361,1.80128481289688,0.453142408984205,1.03552062350364,5.50072942196136,7.58147259461959,2.56100408631201,0.729320151204882,1.88651846365184,1.83843508450014,0.666740183404846,0.412070114477788,0.64183841918363,0.758091635291392,0.760437899670719,0.565879024158229,0.655490552289177,0.384150914429216,1.14870937911227,0,0.811190281613988,1.35036454324594,0.824171801606613,0.441596760403192,1.37147700954166,0.354951612318675,0,0.872078499793971,0.564656282491984,0.846146078916765,0,0.789209134313529,0.814824683075171,0.561142271657738,0.474540072496697,0.886540341380071,0.818462086339379,0.309873682371932,0.771626443924566,1.49886346762768,0.467863216890817,1.50409737833809,1.53030665655075,1.54413993383661,0.695603506861264 | |||
|short_description=p4@Prdm16 | |||
}} |
Revision as of 04:38, 14 September 2013
Short description: | p4@Prdm16 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Prdm16_5end |
Coexpression cluster: | NA |
Association with transcript: | 230bp_to_uc008wby.1_5end |
EntrezGene: | Prdm16 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.42e-17 | 44 |
neurectodermal cell | 1.42e-17 | 44 |
neural cell | 1.29e-16 | 43 |
CNS neuron (sensu Vertebrata) | 1.37e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.37e-13 | 23 |
neuron | 8.71e-11 | 33 |
neuronal stem cell | 8.71e-11 | 33 |
neuroblast | 8.71e-11 | 33 |
electrically signaling cell | 8.71e-11 | 33 |
electrically responsive cell | 6.37e-08 | 39 |
electrically active cell | 6.37e-08 | 39 |
migratory neural crest cell | 3.01e-07 | 10 |
neuron associated cell | 3.01e-07 | 10 |
glial cell (sensu Vertebrata) | 3.01e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 3.01e-07 | 10 |
glial cell | 3.01e-07 | 10 |
glioblast | 3.01e-07 | 10 |
glioblast (sensu Vertebrata) | 3.01e-07 | 10 |
oligodendrocyte precursor cell | 6.96e-07 | 8 |
embryonic cell | 7.70e-07 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.