FFCP PHASE1:Mm9::chr4:13678684..13678704,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12395|HGNC=|MCL_coexpression_id=13|UniProt=B1AXH8|association_with_transcript=240bp_to_ENSMUST00000105566,ENSMUST00000150583,NM_001111027,uc008sav.2,uc008saw.2_5end|description=CAGE_peak_17_at_Runx1t1_5end|id=chr4:13678684..13678704,+|ontology_enrichment_celltype=CL:0000117!1.94e-10!23;CL:0000337!1.94e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,2.79e-09,23;CL:0000337,2.79e-09,23;CL:0002613,3.26e-08,3;CL:0002612,5.08e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!1.16e-23!49;UBERON:0000033!1.72e-22!63;UBERON:0001049!5.12e-22!52;UBERON:0005068!5.12e-22!52;UBERON:0006241!5.12e-22!52;UBERON:0007135!5.12e-22!52;UBERON:0002346!2.77e-21!71;UBERON:0003075!2.77e-21!71;UBERON:0007284!2.77e-21!71;UBERON:0000955!6.85e-21!50;UBERON:0006238!6.85e-21!50;UBERON:0002616!4.13e-20!49;UBERON:0003080!4.00e-19!40;UBERON:0002780!1.71e-18!39;UBERON:0001890!1.71e-18!39;UBERON:0006240!1.71e-18!39;UBERON:0001017!1.56e-17!73;UBERON:0005743!1.56e-17!73;UBERON:0002020!3.45e-17!34;UBERON:0000073!1.74e-16!75;UBERON:0001016!1.74e-16!75;UBERON:0002791!1.28e-15!29;UBERON:0003528!1.28e-15!29;UBERON:0001893!1.28e-15!29;UBERON:0004121!7.54e-14!102;UBERON:0000924!7.54e-14!102;UBERON:0006601!7.54e-14!102;UBERON:0007811!1.04e-11!86;UBERON:0000153!4.46e-11!94;UBERON:0000956!5.49e-10!21;UBERON:0001869!5.49e-10!21;UBERON:0000203!5.49e-10!21;UBERON:0002619!5.34e-09!17;UBERON:0002021!6.45e-09!10;UBERON:0000411!6.45e-09!10;UBERON:0001950!6.45e-09!10;UBERON:0002420!4.03e-07!8;UBERON:0007245!4.03e-07!8;UBERON:0010009!4.03e-07!8;UBERON:0010011!4.03e-07!8;UBERON:0000454!4.03e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.49e-29,64;UBERON:0003075,1.49e-29,64;UBERON:0007284,1.49e-29,64;UBERON:0000073,2.09e-29,54;UBERON:0001049,1.05e-28,52;UBERON:0005068,1.05e-28,52;UBERON:0006241,1.05e-28,52;UBERON:0007135,1.05e-28,52;UBERON:0003056,4.91e-28,49;UBERON:0000955,1.08e-27,47;UBERON:0006238,1.08e-27,47;UBERON:0002616,4.71e-26,46;UBERON:0003080,9.52e-26,40;UBERON:0001017,3.74e-25,73;UBERON:0010371,6.17e-25,73;UBERON:0002780,2.26e-24,39;UBERON:0001890,2.26e-24,39;UBERON:0006240,2.26e-24,39;UBERON:0001016,2.85e-24,75;UBERON:0002020,7.12e-24,34;UBERON:0004121,2.84e-23,95;UBERON:0000924,2.84e-23,95;UBERON:0006601,2.84e-23,95;UBERON:0003528,9.54e-21,29;UBERON:0002791,9.54e-21,29;UBERON:0001893,9.54e-21,29;UBERON:0002021,2.91e-20,10;UBERON:0000411,2.91e-20,10;UBERON:0001950,2.91e-20,10;UBERON:0010314,3.73e-18,92;UBERON:0002619,3.86e-13,17;UBERON:0000369,3.08e-12,5;UBERON:0002435,3.08e-12,5;UBERON:0000204,3.08e-12,5;UBERON:0010082,3.08e-12,5;UBERON:0000956,3.63e-12,21;UBERON:0001869,3.63e-12,21;UBERON:0000203,3.63e-12,21;UBERON:0002420,2.23e-10,8;UBERON:0007245,2.23e-10,8;UBERON:0010009,2.23e-10,8;UBERON:0010011,2.23e-10,8;UBERON:0000454,2.23e-10,8;UBERON:0000025,3.17e-09,114;UBERON:0004111,3.60e-08,122;UBERON:0002257,5.08e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42779753031517,2.11596391708813,0.633831403506179,0,0,0,0,0,0,0,0.414758449233911,0.270011876663381,0.210324961351382,0,0.441737081903227,0.61245399607477,1.0543001812006,0.919218786610021,0,0.638436690425939,1.22885226604995,3.69281605644543,3.84248103130121,6.77187381723788,0.558365998002762,2.25105044012672,0.763991238884051,1.17851434189467,2.70506193518296,3.35519002485541,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.92780797011547,2.09446706813455,0,0,0,0,1.19832511523858,4.57500602818627,2.1361239859187,1.73824320192276,1.27857728665165,1.24672826735736,1.62241263067758,0.203678727700633,0.124406970610093,0,0.841767423545896,0.130120442962704,0.229902104433473,0.900310649026746,1.80845781402858,1.29269348387523,1.7935920839879,1.40552586839593,0.776110112217047,0,0,0.351902248327898,0.219195732427575,0,0.348252166522167,0.205782136407943,0,0,0,0,0,0.469052119962192,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0,0,0.630869845692382,0.823236899034275,0,0,0.426576501070468,0.232236671860439,0.257734922644187,0.201683524623343,0.22237804384487,0.190225626112559,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0.333690211432188,0.393117990226406,0,0.405720242777006,0.241177159752417,0.25462585178142,0.287696137450811,0.972811360650212,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0.234690248288502,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.468846746368813,0,0,0.315508219416257,0,0.215423397732799,0,0,0,0,0,0,2.24924921495265,0,0.35613120733451,0.488660878060728,0.659880491890142,0,0,0,0.377210159511796,0,0,0.775284879504663,0,0,0,0,0,3.40439605753788,0,0,0.857348140126369,0.709360934569094,2.14042581122485,1.31639216481697,0.304464949114599,0,0,0,0.16488625294148,0.161464426695906,0,0,0,0,0.556275906031529,0,0,0,0.188368457004691,0,0.228778173206523,0,0,0,0,0.158167996790568,0.203319467126849,0.32401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| ||
|EntrezGene=12395 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=B1AXH8 | |||
|association_with_transcript=240bp_to_ENSMUST00000105566,ENSMUST00000150583,NM_001111027,uc008sav.2,uc008saw.2_5end | |||
|description=CAGE_peak_17_at_Runx1t1_5end | |||
|id=chr4:13678684..13678704,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.94e-10!23;CL:0000337!1.94e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.79e-09,23;CL:0000337,2.79e-09,23;CL:0002613,3.26e-08,3;CL:0002612,5.08e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!1.16e-23!49;UBERON:0000033!1.72e-22!63;UBERON:0001049!5.12e-22!52;UBERON:0005068!5.12e-22!52;UBERON:0006241!5.12e-22!52;UBERON:0007135!5.12e-22!52;UBERON:0002346!2.77e-21!71;UBERON:0003075!2.77e-21!71;UBERON:0007284!2.77e-21!71;UBERON:0000955!6.85e-21!50;UBERON:0006238!6.85e-21!50;UBERON:0002616!4.13e-20!49;UBERON:0003080!4.00e-19!40;UBERON:0002780!1.71e-18!39;UBERON:0001890!1.71e-18!39;UBERON:0006240!1.71e-18!39;UBERON:0001017!1.56e-17!73;UBERON:0005743!1.56e-17!73;UBERON:0002020!3.45e-17!34;UBERON:0000073!1.74e-16!75;UBERON:0001016!1.74e-16!75;UBERON:0002791!1.28e-15!29;UBERON:0003528!1.28e-15!29;UBERON:0001893!1.28e-15!29;UBERON:0004121!7.54e-14!102;UBERON:0000924!7.54e-14!102;UBERON:0006601!7.54e-14!102;UBERON:0007811!1.04e-11!86;UBERON:0000153!4.46e-11!94;UBERON:0000956!5.49e-10!21;UBERON:0001869!5.49e-10!21;UBERON:0000203!5.49e-10!21;UBERON:0002619!5.34e-09!17;UBERON:0002021!6.45e-09!10;UBERON:0000411!6.45e-09!10;UBERON:0001950!6.45e-09!10;UBERON:0002420!4.03e-07!8;UBERON:0007245!4.03e-07!8;UBERON:0010009!4.03e-07!8;UBERON:0010011!4.03e-07!8;UBERON:0000454!4.03e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.49e-29,64;UBERON:0003075,1.49e-29,64;UBERON:0007284,1.49e-29,64;UBERON:0000073,2.09e-29,54;UBERON:0001049,1.05e-28,52;UBERON:0005068,1.05e-28,52;UBERON:0006241,1.05e-28,52;UBERON:0007135,1.05e-28,52;UBERON:0003056,4.91e-28,49;UBERON:0000955,1.08e-27,47;UBERON:0006238,1.08e-27,47;UBERON:0002616,4.71e-26,46;UBERON:0003080,9.52e-26,40;UBERON:0001017,3.74e-25,73;UBERON:0010371,6.17e-25,73;UBERON:0002780,2.26e-24,39;UBERON:0001890,2.26e-24,39;UBERON:0006240,2.26e-24,39;UBERON:0001016,2.85e-24,75;UBERON:0002020,7.12e-24,34;UBERON:0004121,2.84e-23,95;UBERON:0000924,2.84e-23,95;UBERON:0006601,2.84e-23,95;UBERON:0003528,9.54e-21,29;UBERON:0002791,9.54e-21,29;UBERON:0001893,9.54e-21,29;UBERON:0002021,2.91e-20,10;UBERON:0000411,2.91e-20,10;UBERON:0001950,2.91e-20,10;UBERON:0010314,3.73e-18,92;UBERON:0002619,3.86e-13,17;UBERON:0000369,3.08e-12,5;UBERON:0002435,3.08e-12,5;UBERON:0000204,3.08e-12,5;UBERON:0010082,3.08e-12,5;UBERON:0000956,3.63e-12,21;UBERON:0001869,3.63e-12,21;UBERON:0000203,3.63e-12,21;UBERON:0002420,2.23e-10,8;UBERON:0007245,2.23e-10,8;UBERON:0010009,2.23e-10,8;UBERON:0010011,2.23e-10,8;UBERON:0000454,2.23e-10,8;UBERON:0000025,3.17e-09,114;UBERON:0004111,3.60e-08,122;UBERON:0002257,5.08e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42779753031517,2.11596391708813,0.633831403506179,0,0,0,0,0,0,0,0.414758449233911,0.270011876663381,0.210324961351382,0,0.441737081903227,0.61245399607477,1.0543001812006,0.919218786610021,0,0.638436690425939,1.22885226604995,3.69281605644543,3.84248103130121,6.77187381723788,0.558365998002762,2.25105044012672,0.763991238884051,1.17851434189467,2.70506193518296,3.35519002485541,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.92780797011547,2.09446706813455,0,0,0,0,1.19832511523858,4.57500602818627,2.1361239859187,1.73824320192276,1.27857728665165,1.24672826735736,1.62241263067758,0.203678727700633,0.124406970610093,0,0.841767423545896,0.130120442962704,0.229902104433473,0.900310649026746,1.80845781402858,1.29269348387523,1.7935920839879,1.40552586839593,0.776110112217047,0,0,0.351902248327898,0.219195732427575,0,0.348252166522167,0.205782136407943,0,0,0,0,0,0.469052119962192,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0,0,0.630869845692382,0.823236899034275,0,0,0.426576501070468,0.232236671860439,0.257734922644187,0.201683524623343,0.22237804384487,0.190225626112559,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0.333690211432188,0.393117990226406,0,0.405720242777006,0.241177159752417,0.25462585178142,0.287696137450811,0.972811360650212,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0.234690248288502,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.468846746368813,0,0,0.315508219416257,0,0.215423397732799,0,0,0,0,0,0,2.24924921495265,0,0.35613120733451,0.488660878060728,0.659880491890142,0,0,0,0.377210159511796,0,0,0.775284879504663,0,0,0,0,0,3.40439605753788,0,0,0.857348140126369,0.709360934569094,2.14042581122485,1.31639216481697,0.304464949114599,0,0,0,0.16488625294148,0.161464426695906,0,0,0,0,0.556275906031529,0,0,0,0.188368457004691,0,0.228778173206523,0,0,0,0,0.158167996790568,0.203319467126849,0.324016022465404,0.209088296014469,0,0,0,0,0,0,2.81846469342095,0.897099276263873,0,0,0,0.675824501963113,0.352071715937262,0,0.104859344425711,0.966336483304024,0.864090018773596,0,0,0.102710957164827,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,2.82375921308533,1.38097570952153,3.43737308063638,2.23409137046794,1.37016503954128,1.5107877947794,3.37511250115903,1.80128481289688,2.71885445390523,3.10656187051092,0.31136204275253,0.399024873401031,0.341467211508268,1.70174701947806,0.419226325255965,0.367687016900028,0.888986911206461,0.412070114477788,0.64183841918363,0.758091635291392,1.77435509923168,0,0.280924522409647,0.256100609619477,0.689225627467359,0.476293691283074,1.39061191133827,0.578727661391115,0,1.03039244094078,0.685738504770831,0.532427418478012,0.476872379894642,0.436039249896986,0.658765662907314,0.761531471025089,0.548783918618318,1.05227884575137,0.135804113845862,0.561142271657738,0.593175090620871,0.492522411877817,0.818462086339379,0.77468420592983,0.385813221962283,0.999242311751784,0.233931608445408,0.429742108096597,0.191288332068843,0.220591419119515,0.463735671240843 | |||
|short_description=p17@Runx1t1 | |||
}} |
Revision as of 04:10, 14 September 2013
Short description: | p17@Runx1t1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_17_at_Runx1t1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 240bp_to_ENSMUST00000105566, ENSMUST00000150583, NM_001111027, uc008sav.2, uc008saw.2_5end |
EntrezGene: | Runx1t1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.79e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.79e-09 | 23 |
striatum neuron | 3.26e-08 | 3 |
neuron of the ventral spinal cord | 5.08e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.