FFCP PHASE1:Mm9::chr4:12098960..12098998,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68099|HGNC=|MCL_coexpression_id=60|UniProt=|association_with_transcript=-79bp_to_ENSMUST00000152219_5end|description=CAGE_peak_1_at_Fam92a_5end|id=chr4:12098960..12098998,-|ontology_enrichment_celltype=CL:0000393!1.42e-09!39;CL:0000211!1.42e-09!39;CL:0000540!3.56e-07!33;CL:0000047!3.56e-07!33;CL:0000031!3.56e-07!33;CL:0000404!3.56e-07!33;CL:0000055!3.80e-07!50|ontology_enrichment_celltype_v019_2=CL:0000393,1.42e-09,39;CL:0000211,1.42e-09,39;CL:0000540,3.56e-07,33;CL:0000047,3.56e-07,33;CL:0000031,3.56e-07,33;CL:0000404,3.56e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.32e-15!75;UBERON:0001016!2.32e-15!75;UBERON:0001017!3.56e-15!73;UBERON:0005743!3.56e-15!73;UBERON:0002346!1.10e-12!71;UBERON:0003075!1.10e-12!71;UBERON:0007284!1.10e-12!71;UBERON:0004121!1.42e-12!102;UBERON:0000924!1.42e-12!102;UBERON:0006601!1.42e-12!102;UBERON:0001049!7.46e-11!52;UBERON:0005068!7.46e-11!52;UBERON:0006241!7.46e-11!52;UBERON:0007135!7.46e-11!52;UBERON:0000033!1.27e-10!63;UBERON:0000955!4.33e-10!50;UBERON:0006238!4.33e-10!50;UBERON:0002616!1.12e-09!49;UBERON:0002020!1.58e-09!34;UBERON:0000025!6.97e-09!114;UBERON:0003056!1.26e-08!49;UBERON:0004111!2.66e-08!122;UBERON:0002021!5.75e-08!10;UBERON:0000411!5.75e-08!10;UBERON:0001950!5.75e-08!10;UBERON:0003080!1.80e-07!40;UBERON:0002791!2.51e-07!29;UBERON:0003528!2.51e-07!29;UBERON:0001893!2.51e-07!29;UBERON:0002619!3.01e-07!17;UBERON:0002780!5.06e-07!39;UBERON:0001890!5.06e-07!39;UBERON:0006240!5.06e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0010314,3.55e-16,92;UBERON:0001016,2.32e-15,75;UBERON:0001017,3.56e-15,73;UBERON:0002346,1.26e-13,64;UBERON:0003075,1.26e-13,64;UBERON:0007284,1.26e-13,64;UBERON:0004121,4.23e-13,95;UBERON:0000924,4.23e-13,95;UBERON:0006601,4.23e-13,95;UBERON:0000073,7.01e-12,54;UBERON:0010371,4.16e-11,73;UBERON:0001049,7.46e-11,52;UBERON:0005068,7.46e-11,52;UBERON:0006241,7.46e-11,52;UBERON:0007135,7.46e-11,52;UBERON:0002020,1.58e-09,34;UBERON:0000025,6.97e-09,114;UBERON:0000955,1.26e-08,47;UBERON:0006238,1.26e-08,47;UBERON:0003056,1.26e-08,49;UBERON:0004111,2.66e-08,122;UBERON:0002616,3.12e-08,46;UBERON:0002021,5.75e-08,10;UBERON:0000411,5.75e-08,10;UBERON:0001950,5.75e-08,10;UBERON:0003080,1.80e-07,40;UBERON:0003528,2.51e-07,29;UBERON:0002791,2.51e-07,29;UBERON:0001893,2.51e-07,29;UBERON:0002619,3.01e-07,17;UBERON:0002780,5.06e-07,39;UBERON:0001890,5.06e-07,39;UBERON:0006240,5.06e-07,39|phase1_expression=42.5995933298752,2.79180326111489,1.36499771816861,1.51232105653415,1.00179145989269,6.5472916045637,8.87728034262997,10.5881125222093,0.84473233291,0.70219357896598,3.76679530096111,5.02564601670619,5.82082481766099,7.08105259593879,12.9912807108108,11.9460407759997,16.0899231969474,6.30924330716475,7.12995054749842,9.33657233955666,35.4630519929961,25.120610653824,25.8587791247546,7.35965144849671,8.48814339948529,1.14846392823004,3.87685796543167,5.38678081714723,3.42042155021473,6.30075324399827,8.86922042621219,8.89042942843484,14.7615549020297,0,15.0202842270663,17.9533416987172,16.9460565697766,3.34825304589526,5.4693474116666,3.66466620781659,2.94115744015507,3.41522742479223,3.88408282424923,53.6320444575959,44.4030958741474,53.2285581268876,19.559783608701,27.6891948603167,23.0670491871195,45.8854561815309,37.6563474172225,24.4379359420452,3.52343472721246,7.97898356212479,13.779845764841,49.3938117189018,53.8682867084863,43.8321278435826,31.7636843549569,25.3915670050576,38.6637156138769,15.9256930072492,19.5644855144451,7.19919773825119,6.92206453796882,5.6838409195688,12.8828047522914,16.5213871288268,31.8327109787026,25.7861342213529,30.286794434599,47.989365379839,51.2415015007743,31.3576445990282,21.8527673921579,40.4456266108409,60.5637345496638,54.9055553766307,60.0601545031912,30.3338461779446,27.0803425063133,19.2737947106001,65.8871877643259,47.2720592426611,47.2146585630343,64.2290316332596,61.2198227436143,43.2446714314697,30.0632987532741,45.5696507443917,38.8418414860248,21.5105969245347,18.3592260101093,12.9528765993076,34.4381501247265,28.6737207742295,23.0328849016073,56.4124367733371,43.644048773282,46.9941634098752,33.3798904870733,38.4979432242953,56.0571527354621,63.9960032837998,28.5768174134803,29.1363845296363,31.3425155909166,16.8992141984209,17.6077760880077,31.1728492036132,26.3697696684527,28.3152894830291,27.9044751679831,31.8024771566034,37.8635636976969,34.6839792069904,29.9105910958592,20.0993106118677,15.0383793831479,39.3093445372204,17.6673214768315,18.4252596191384,11.1835056730873,48.0160507098937,39.3759808809296,8.17462576667492,25.9998820177847,44.3928020935122,28.3366606372934,56.7706523344278,48.0375632959558,40.2093926761166,54.7546608605671,44.2387741181472,49.0379785160562,47.0499662896497,45.1148381856901,20.4027431800553,32.8539585963777,18.7293251738962,32.5301107406759,45.5206166778276,38.173171518734,40.8410056334788,50.3470093719826,48.0426451068187,39.9169346624445,36.4771752742012,25.6525911590082,43.8726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| ||
|EntrezGene=68099 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt= | |||
|association_with_transcript=-79bp_to_ENSMUST00000152219_5end | |||
|description=CAGE_peak_1_at_Fam92a_5end | |||
|id=chr4:12098960..12098998,- | |||
|ontology_enrichment_celltype=CL:0000393!1.42e-09!39;CL:0000211!1.42e-09!39;CL:0000540!3.56e-07!33;CL:0000047!3.56e-07!33;CL:0000031!3.56e-07!33;CL:0000404!3.56e-07!33;CL:0000055!3.80e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.42e-09,39;CL:0000211,1.42e-09,39;CL:0000540,3.56e-07,33;CL:0000047,3.56e-07,33;CL:0000031,3.56e-07,33;CL:0000404,3.56e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.32e-15!75;UBERON:0001016!2.32e-15!75;UBERON:0001017!3.56e-15!73;UBERON:0005743!3.56e-15!73;UBERON:0002346!1.10e-12!71;UBERON:0003075!1.10e-12!71;UBERON:0007284!1.10e-12!71;UBERON:0004121!1.42e-12!102;UBERON:0000924!1.42e-12!102;UBERON:0006601!1.42e-12!102;UBERON:0001049!7.46e-11!52;UBERON:0005068!7.46e-11!52;UBERON:0006241!7.46e-11!52;UBERON:0007135!7.46e-11!52;UBERON:0000033!1.27e-10!63;UBERON:0000955!4.33e-10!50;UBERON:0006238!4.33e-10!50;UBERON:0002616!1.12e-09!49;UBERON:0002020!1.58e-09!34;UBERON:0000025!6.97e-09!114;UBERON:0003056!1.26e-08!49;UBERON:0004111!2.66e-08!122;UBERON:0002021!5.75e-08!10;UBERON:0000411!5.75e-08!10;UBERON:0001950!5.75e-08!10;UBERON:0003080!1.80e-07!40;UBERON:0002791!2.51e-07!29;UBERON:0003528!2.51e-07!29;UBERON:0001893!2.51e-07!29;UBERON:0002619!3.01e-07!17;UBERON:0002780!5.06e-07!39;UBERON:0001890!5.06e-07!39;UBERON:0006240!5.06e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,3.55e-16,92;UBERON:0001016,2.32e-15,75;UBERON:0001017,3.56e-15,73;UBERON:0002346,1.26e-13,64;UBERON:0003075,1.26e-13,64;UBERON:0007284,1.26e-13,64;UBERON:0004121,4.23e-13,95;UBERON:0000924,4.23e-13,95;UBERON:0006601,4.23e-13,95;UBERON:0000073,7.01e-12,54;UBERON:0010371,4.16e-11,73;UBERON:0001049,7.46e-11,52;UBERON:0005068,7.46e-11,52;UBERON:0006241,7.46e-11,52;UBERON:0007135,7.46e-11,52;UBERON:0002020,1.58e-09,34;UBERON:0000025,6.97e-09,114;UBERON:0000955,1.26e-08,47;UBERON:0006238,1.26e-08,47;UBERON:0003056,1.26e-08,49;UBERON:0004111,2.66e-08,122;UBERON:0002616,3.12e-08,46;UBERON:0002021,5.75e-08,10;UBERON:0000411,5.75e-08,10;UBERON:0001950,5.75e-08,10;UBERON:0003080,1.80e-07,40;UBERON:0003528,2.51e-07,29;UBERON:0002791,2.51e-07,29;UBERON:0001893,2.51e-07,29;UBERON:0002619,3.01e-07,17;UBERON:0002780,5.06e-07,39;UBERON:0001890,5.06e-07,39;UBERON:0006240,5.06e-07,39 | |||
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| |||
|short_description=p1@Fam92a | |||
}} |
Revision as of 03:40, 14 September 2013
Short description: | p1@Fam92a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fam92a_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | -79bp_to_ENSMUST00000152219_5end |
EntrezGene: | Fam92a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.42e-09 | 39 |
electrically active cell | 1.42e-09 | 39 |
neuron | 3.56e-07 | 33 |
neuronal stem cell | 3.56e-07 | 33 |
neuroblast | 3.56e-07 | 33 |
electrically signaling cell | 3.56e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 3.55e-16 | 92 |
nervous system | 2.32e-15 | 75 |
central nervous system | 3.56e-15 | 73 |
neurectoderm | 1.26e-13 | 64 |
neural plate | 1.26e-13 | 64 |
presumptive neural plate | 1.26e-13 | 64 |
ectoderm-derived structure | 4.23e-13 | 95 |
ectoderm | 4.23e-13 | 95 |
presumptive ectoderm | 4.23e-13 | 95 |
regional part of nervous system | 7.01e-12 | 54 |
ecto-epithelium | 4.16e-11 | 73 |
neural tube | 7.46e-11 | 52 |
neural rod | 7.46e-11 | 52 |
future spinal cord | 7.46e-11 | 52 |
neural keel | 7.46e-11 | 52 |
gray matter | 1.58e-09 | 34 |
tube | 6.97e-09 | 114 |
brain | 1.26e-08 | 47 |
future brain | 1.26e-08 | 47 |
pre-chordal neural plate | 1.26e-08 | 49 |
anatomical conduit | 2.66e-08 | 122 |
regional part of brain | 3.12e-08 | 46 |
occipital lobe | 5.75e-08 | 10 |
visual cortex | 5.75e-08 | 10 |
neocortex | 5.75e-08 | 10 |
anterior neural tube | 1.80e-07 | 40 |
brain grey matter | 2.51e-07 | 29 |
regional part of telencephalon | 2.51e-07 | 29 |
telencephalon | 2.51e-07 | 29 |
regional part of cerebral cortex | 3.01e-07 | 17 |
regional part of forebrain | 5.06e-07 | 39 |
forebrain | 5.06e-07 | 39 |
future forebrain | 5.06e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.