FFCP PHASE1:Mm9::chr3:87710452..87710529,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=15191|HGNC=|MCL_coexpression_id=60|UniProt=P51859|association_with_transcript=209bp_to_ENSMUST00000005017,NM_008231,uc008ptc.2_5end|description=CAGE_peak_2_at_Hdgf_5end|id=chr3:87710452..87710529,+|ontology_enrichment_celltype=CL:0002319!6.00e-07!43;CL:0000221!8.22e-07!44;CL:0000133!8.22e-07!44|ontology_enrichment_celltype_v019_2=CL:0002319,6.00e-07,43;CL:0000221,8.22e-07,44;CL:0000133,8.22e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.03e-16!75;UBERON:0001016!2.03e-16!75;UBERON:0001017!1.12e-15!73;UBERON:0005743!1.12e-15!73;UBERON:0004121!9.42e-12!102;UBERON:0000924!9.42e-12!102;UBERON:0006601!9.42e-12!102;UBERON:0001049!1.43e-11!52;UBERON:0005068!1.43e-11!52;UBERON:0006241!1.43e-11!52;UBERON:0007135!1.43e-11!52;UBERON:0000955!2.31e-11!50;UBERON:0006238!2.31e-11!50;UBERON:0002616!3.36e-11!49;UBERON:0000033!5.39e-10!63;UBERON:0002346!2.21e-08!71;UBERON:0003075!2.21e-08!71;UBERON:0007284!2.21e-08!71;UBERON:0002020!2.31e-07!34;UBERON:0003080!3.03e-07!40;UBERON:0002021!3.64e-07!10;UBERON:0000411!3.64e-07!10;UBERON:0001950!3.64e-07!10;UBERON:0002780!8.98e-07!39;UBERON:0001890!8.98e-07!39;UBERON:0006240!8.98e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.03e-16,75;UBERON:0001017,1.12e-15,73;UBERON:0004121,2.77e-13,95;UBERON:0000924,2.77e-13,95;UBERON:0006601,2.77e-13,95;UBERON:0000073,1.77e-12,54;UBERON:0001049,1.43e-11,52;UBERON:0005068,1.43e-11,52;UBERON:0006241,1.43e-11,52;UBERON:0007135,1.43e-11,52;UBERON:0000955,5.10e-10,47;UBERON:0006238,5.10e-10,47;UBERON:0002346,5.55e-10,64;UBERON:0003075,5.55e-10,64;UBERON:0007284,5.55e-10,64;UBERON:0002616,7.36e-10,46;UBERON:0010371,5.05e-08,73;UBERON:0002020,2.31e-07,34;UBERON:0003080,3.03e-07,40;UBERON:0002021,3.64e-07,10;UBERON:0000411,3.64e-07,10;UBERON:0001950,3.64e-07,10;UBERON:0002780,8.98e-07,39;UBERON:0001890,8.98e-07,39;UBERON:0006240,8.98e-07,39|phase1_expression=18.0968197228417,7.32848356042658,4.54999239389536,9.67885476181856,9.01612313903425,13.0945832091274,10.2789561862031,11.1046058159756,18.4433226018683,16.3845168425395,21.5734639964136,22.4957488366849,9.58724087614752,11.1023911072127,16.6554880907831,17.412872995525,20.2872944657163,10.2525203741427,11.1062691220648,10.6097412949508,58.4247403337849,15.6879702897399,17.5003858723087,16.1592347021341,13.535147582963,7.46501553349526,7.32295393470427,8.18790684206378,20.5225293012884,8.31699428207772,8.86922042621219,7.62036808151557,6.1506478758457,15.8481681015439,26.285497397366,25.2676660944908,23.0711372576477,10.0447591376858,12.5013655123808,12.0410461113974,7.64700934440319,8.87959130445979,11.6522484727477,13.2191658874356,14.4969011643906,13.5824596599644,41.4667412504461,37.7183520538172,49.8687634807251,36.5528210259653,23.6577052546863,31.6255641602937,18.7916518784665,16.6833292662609,18.821252751978,24.182386987379,20.3438742356517,19.0798674142654,29.9428362072205,21.6886301501533,26.6209189472595,28.8017852258762,31.1253178638899,29.6966906702862,41.5323872278129,29.8401648277362,29.3608108308037,45.721978333265,13.0648911508682,15.9307007231395,15.7743721013537,27.4224945027651,27.6085676189517,14.9438775042244,12.6516021744072,14.7075005857603,31.9336054898227,35.7524546638526,36.7119614482422,28.8830970129125,29.3675335963735,26.5665818983948,36.5729728691809,26.449842671489,34.8380004931127,23.5702868378934,21.6404954814636,28.3327157654457,25.6711795399494,29.8507662421803,14.7830889237856,19.7897491705719,18.3592260101093,26.9851595818909,15.5946340187441,17.0250217096988,25.8417733042423,27.6097122576454,21.5622383820381,25.0871097902342,18.8730182500752,11.5493829672886,20.3844191765317,42.6640021891999,23.8140145112336,24.3225470856095,30.331466700887,23.8644308612835,9.58070169494535,21.2272258862699,17.1750473498474,14.9188084372949,17.2961622942044,14.6200961336044,12.4644029563847,26.7669839532209,18.7868175478124,24.581890676385,14.153768831198,23.7797269422691,22.9675179198809,19.8798853785441,16.775258509631,27.5213949190854,34.1398132105932,14.3055950916811,20.7280165395242,8.39863823390771,14.1047952051102,43.7388667062082,26.5350349634803,19.0994615211554,37.1984045211472,38.1016031422192,34.0772393077679,39.7491094516006,17.2108524907035,15.3020573850414,18.4487613656583,23.7799297151716,17.566259799965,15.1735388926092,19.4467100189777,15.5225962370787,19.6625482547337,16.9110110776002,19.1151518101847,25.8703370739016,17.2454394346274,13.8047438522508,15.1317966780996,17.3164628617784,12.2340789659263,22.2881386574187,17.4914815946752,12.7381930763836,18.9597560574573,14.6688307055388,16.4814829649444,15.9486844852336,15.7132460187334,19.9868888221726,14.9149183418682,11.4123254413494,12.9584374825398,12.7893669612724,19.047411499373,16.9309746432396,22.0510198884064,16.2525789438304,23.1046107205689,19.4445983275692,22.3941117596872,17.8494536951294,35.3287113587734,17.5966887168576,14.8688452342709,13.2225283331772,16.6364835417482,17.4177503895329,16.88163743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| ||
|EntrezGene=15191 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=P51859 | |||
|association_with_transcript=209bp_to_ENSMUST00000005017,NM_008231,uc008ptc.2_5end | |||
|description=CAGE_peak_2_at_Hdgf_5end | |||
|id=chr3:87710452..87710529,+ | |||
|ontology_enrichment_celltype=CL:0002319!6.00e-07!43;CL:0000221!8.22e-07!44;CL:0000133!8.22e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,6.00e-07,43;CL:0000221,8.22e-07,44;CL:0000133,8.22e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.03e-16!75;UBERON:0001016!2.03e-16!75;UBERON:0001017!1.12e-15!73;UBERON:0005743!1.12e-15!73;UBERON:0004121!9.42e-12!102;UBERON:0000924!9.42e-12!102;UBERON:0006601!9.42e-12!102;UBERON:0001049!1.43e-11!52;UBERON:0005068!1.43e-11!52;UBERON:0006241!1.43e-11!52;UBERON:0007135!1.43e-11!52;UBERON:0000955!2.31e-11!50;UBERON:0006238!2.31e-11!50;UBERON:0002616!3.36e-11!49;UBERON:0000033!5.39e-10!63;UBERON:0002346!2.21e-08!71;UBERON:0003075!2.21e-08!71;UBERON:0007284!2.21e-08!71;UBERON:0002020!2.31e-07!34;UBERON:0003080!3.03e-07!40;UBERON:0002021!3.64e-07!10;UBERON:0000411!3.64e-07!10;UBERON:0001950!3.64e-07!10;UBERON:0002780!8.98e-07!39;UBERON:0001890!8.98e-07!39;UBERON:0006240!8.98e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.03e-16,75;UBERON:0001017,1.12e-15,73;UBERON:0004121,2.77e-13,95;UBERON:0000924,2.77e-13,95;UBERON:0006601,2.77e-13,95;UBERON:0000073,1.77e-12,54;UBERON:0001049,1.43e-11,52;UBERON:0005068,1.43e-11,52;UBERON:0006241,1.43e-11,52;UBERON:0007135,1.43e-11,52;UBERON:0000955,5.10e-10,47;UBERON:0006238,5.10e-10,47;UBERON:0002346,5.55e-10,64;UBERON:0003075,5.55e-10,64;UBERON:0007284,5.55e-10,64;UBERON:0002616,7.36e-10,46;UBERON:0010371,5.05e-08,73;UBERON:0002020,2.31e-07,34;UBERON:0003080,3.03e-07,40;UBERON:0002021,3.64e-07,10;UBERON:0000411,3.64e-07,10;UBERON:0001950,3.64e-07,10;UBERON:0002780,8.98e-07,39;UBERON:0001890,8.98e-07,39;UBERON:0006240,8.98e-07,39 | |||
|phase1_expression=18.0968197228417,7.32848356042658,4.54999239389536,9.67885476181856,9.01612313903425,13.0945832091274,10.2789561862031,11.1046058159756,18.4433226018683,16.3845168425395,21.5734639964136,22.4957488366849,9.58724087614752,11.1023911072127,16.6554880907831,17.412872995525,20.2872944657163,10.2525203741427,11.1062691220648,10.6097412949508,58.4247403337849,15.6879702897399,17.5003858723087,16.1592347021341,13.535147582963,7.46501553349526,7.32295393470427,8.18790684206378,20.5225293012884,8.31699428207772,8.86922042621219,7.62036808151557,6.1506478758457,15.8481681015439,26.285497397366,25.2676660944908,23.0711372576477,10.0447591376858,12.5013655123808,12.0410461113974,7.64700934440319,8.87959130445979,11.6522484727477,13.2191658874356,14.4969011643906,13.5824596599644,41.4667412504461,37.7183520538172,49.8687634807251,36.5528210259653,23.6577052546863,31.6255641602937,18.7916518784665,16.6833292662609,18.821252751978,24.182386987379,20.3438742356517,19.0798674142654,29.9428362072205,21.6886301501533,26.6209189472595,28.8017852258762,31.1253178638899,29.6966906702862,41.5323872278129,29.8401648277362,29.3608108308037,45.721978333265,13.0648911508682,15.9307007231395,15.7743721013537,27.4224945027651,27.6085676189517,14.9438775042244,12.6516021744072,14.7075005857603,31.9336054898227,35.7524546638526,36.7119614482422,28.8830970129125,29.3675335963735,26.5665818983948,36.5729728691809,26.449842671489,34.8380004931127,23.5702868378934,21.6404954814636,28.3327157654457,25.6711795399494,29.8507662421803,14.7830889237856,19.7897491705719,18.3592260101093,26.9851595818909,15.5946340187441,17.0250217096988,25.8417733042423,27.6097122576454,21.5622383820381,25.0871097902342,18.8730182500752,11.5493829672886,20.3844191765317,42.6640021891999,23.8140145112336,24.3225470856095,30.331466700887,23.8644308612835,9.58070169494535,21.2272258862699,17.1750473498474,14.9188084372949,17.2961622942044,14.6200961336044,12.4644029563847,26.7669839532209,18.7868175478124,24.581890676385,14.153768831198,23.7797269422691,22.9675179198809,19.8798853785441,16.775258509631,27.5213949190854,34.1398132105932,14.3055950916811,20.7280165395242,8.39863823390771,14.1047952051102,43.7388667062082,26.5350349634803,19.0994615211554,37.1984045211472,38.1016031422192,34.0772393077679,39.7491094516006,17.2108524907035,15.3020573850414,18.4487613656583,23.7799297151716,17.566259799965,15.1735388926092,19.4467100189777,15.5225962370787,19.6625482547337,16.9110110776002,19.1151518101847,25.8703370739016,17.2454394346274,13.8047438522508,15.1317966780996,17.3164628617784,12.2340789659263,22.2881386574187,17.4914815946752,12.7381930763836,18.9597560574573,14.6688307055388,16.4814829649444,15.9486844852336,15.7132460187334,19.9868888221726,14.9149183418682,11.4123254413494,12.9584374825398,12.7893669612724,19.047411499373,16.9309746432396,22.0510198884064,16.2525789438304,23.1046107205689,19.4445983275692,22.3941117596872,17.8494536951294,35.3287113587734,17.5966887168576,14.8688452342709,13.2225283331772,16.6364835417482,17.4177503895329,16.8816374331942,19.9666689377109,20.0140239460383,21.6857213768317,16.1339880925134,20.2579714310533,16.0854533632172,22.0841683965677,20.8611573217459,19.7740269903929,19.0201483889731,26.2866480695765,18.2081184914958,16.3375373031912,13.5249282807697,14.0519416213267,15.3222464862424,20.2692519483021,25.4210879239514,36.7549268469209,32.0277404796405,38.7467094714454,21.937494404449,20.5219480030796,22.0146074526787,22.9359354632551,23.1260538382893,25.3236017740038,19.3515647353879,19.5633373466551,10.2145192868272,13.1789478330279,17.2521847832825,14.1413560114031,13.4176199439261,25.2578877947112,24.577445652502,23.1572890254416,21.4313700593261,15.5382957651798,13.6890580211302,12.5611363473639,13.3773441524446,18.9282070909252,23.3282768068293,25.5625078693716,17.9704064281058,17.0527811029557,20.8885746941308,16.5501947862895,20.3768278601757,21.2634116114822,25.6345182696763,28.8270012423916,20.6540994667995,16.2802680319792,38.5321415970701,41.2585136804555,27.7050057686581,30.5489821917291,13.8823616543153,27.7211508450613,22.6194567619439,23.8968797952552,20.2746793414979,23.2122755246843,23.074209995469,19.2888866221466,23.7172666767914,23.4564560987919,20.8651925256155,22.0801348547396,15.1484872198826,20.1263550026493,51.7706039525855,16.2663026223838,22.3719432153916,24.5186603682668,38.0939441816197,27.3617281670095,23.0001180919717,27.9920971697679,24.5983191085458,36.028190404683,44.2758156014995,49.5050607591297,27.5756080660568,16.9257428389432,21.60290019172,18.2186479776853,18.6207245324387,22.831208653065,23.2014119048991,19.1812917942198,13.6109590676952,7.20229040936989,35.2845436887939,14.5099902588502,14.2088695492397,15.8019863311768,17.1896175364517,22.4873032650734,19.5292160542,36.3433591940599,21.0171183381359,15.6854019652049,13.7043950253587,15.6345819313894,20.2307457027117,20.3612574153805,17.8477351493548,20.5728634915777,17.9659965945751,38.1868247206045,14.7096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| |||
|short_description=p2@Hdgf | |||
}} |
Revision as of 02:43, 14 September 2013
Short description: | p2@Hdgf |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Hdgf_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 209bp_to_ENSMUST00000005017, NM_008231, uc008ptc.2_5end |
EntrezGene: | Hdgf |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 6.00e-07 | 43 |
ectodermal cell | 8.22e-07 | 44 |
neurectodermal cell | 8.22e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.03e-16 | 75 |
central nervous system | 1.12e-15 | 73 |
ectoderm-derived structure | 2.77e-13 | 95 |
ectoderm | 2.77e-13 | 95 |
presumptive ectoderm | 2.77e-13 | 95 |
regional part of nervous system | 1.77e-12 | 54 |
neural tube | 1.43e-11 | 52 |
neural rod | 1.43e-11 | 52 |
future spinal cord | 1.43e-11 | 52 |
neural keel | 1.43e-11 | 52 |
brain | 5.10e-10 | 47 |
future brain | 5.10e-10 | 47 |
neurectoderm | 5.55e-10 | 64 |
neural plate | 5.55e-10 | 64 |
presumptive neural plate | 5.55e-10 | 64 |
regional part of brain | 7.36e-10 | 46 |
ecto-epithelium | 5.05e-08 | 73 |
gray matter | 2.31e-07 | 34 |
anterior neural tube | 3.03e-07 | 40 |
occipital lobe | 3.64e-07 | 10 |
visual cortex | 3.64e-07 | 10 |
neocortex | 3.64e-07 | 10 |
regional part of forebrain | 8.98e-07 | 39 |
forebrain | 8.98e-07 | 39 |
future forebrain | 8.98e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.