FFCP PHASE1:Mm9::chr3:7366673..7366694,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=18767|HGNC=|MCL_coexpression_id=13|UniProt=P63248,Q3UTL0|association_with_transcript=69bp_to_ENSMUST00000028999,NM_008862,uc008oof.1_5end|description=CAGE_peak_2_at_Pkia_5end|id=chr3:7366673..7366694,+|ontology_enrichment_celltype=CL:0000540!5.85e-13!33;CL:0000047!5.85e-13!33;CL:0000031!5.85e-13!33;CL:0000404!5.85e-13!33;CL:0000393!4.22e-12!39;CL:0000211!4.22e-12!39;CL:0000117!9.22e-12!23;CL:0000337!9.22e-12!23;CL:0000221!3.27e-09!44;CL:0000133!3.27e-09!44;CL:0002319!3.55e-09!43;CL:0000055!2.76e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,5.30e-14,33;CL:0000047,5.30e-14,33;CL:0000031,5.30e-14,33;CL:0000404,5.30e-14,33;CL:0000393,1.02e-12,39;CL:0000211,1.02e-12,39;CL:0000117,1.08e-12,23;CL:0000337,1.08e-12,23;CL:0000221,2.40e-09,44;CL:0000133,2.40e-09,44;CL:0002319,2.65e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.23e-19!73;UBERON:0005743!2.23e-19!73;UBERON:0000073!1.29e-18!75;UBERON:0001016!1.29e-18!75;UBERON:0002346!3.47e-18!71;UBERON:0003075!3.47e-18!71;UBERON:0007284!3.47e-18!71;UBERON:0004121!7.00e-18!102;UBERON:0000924!7.00e-18!102;UBERON:0006601!7.00e-18!102;UBERON:0001049!2.67e-16!52;UBERON:0005068!2.67e-16!52;UBERON:0006241!2.67e-16!52;UBERON:0007135!2.67e-16!52;UBERON:0000033!4.25e-16!63;UBERON:0002020!5.59e-16!34;UBERON:0003056!1.79e-15!49;UBERON:0000955!4.33e-14!50;UBERON:0006238!4.33e-14!50;UBERON:0002616!4.89e-14!49;UBERON:0003080!8.54e-13!40;UBERON:0002791!9.74e-13!29;UBERON:0003528!9.74e-13!29;UBERON:0001893!9.74e-13!29;UBERON:0002780!2.36e-12!39;UBERON:0001890!2.36e-12!39;UBERON:0006240!2.36e-12!39;UBERON:0000956!2.39e-09!21;UBERON:0001869!2.39e-09!21;UBERON:0000203!2.39e-09!21;UBERON:0000025!9.34e-09!114;UBERON:0002619!1.79e-08!17;UBERON:0000468!7.41e-08!333;UBERON:0004111!1.03e-07!122;UBERON:0002021!2.90e-07!10;UBERON:0000411!2.90e-07!10;UBERON:0001950!2.90e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.09e-25,92;UBERON:0002346,6.26e-22,64;UBERON:0003075,6.26e-22,64;UBERON:0007284,6.26e-22,64;UBERON:0001017,6.76e-21,73;UBERON:0001016,1.69e-19,75;UBERON:0004121,7.83e-19,95;UBERON:0000924,7.83e-19,95;UBERON:0006601,7.83e-19,95;UBERON:0000073,8.01e-19,54;UBERON:0010371,2.92e-18,73;UBERON:0001049,7.08e-18,52;UBERON:0005068,7.08e-18,52;UBERON:0006241,7.08e-18,52;UBERON:0007135,7.08e-18,52;UBERON:0002020,2.68e-17,34;UBERON:0003056,9.57e-17,49;UBERON:0000955,2.08e-14,47;UBERON:0006238,2.08e-14,47;UBERON:0002616,2.35e-14,46;UBERON:0003080,8.02e-14,40;UBERON:0003528,9.25e-14,29;UBERON:0002791,9.25e-14,29;UBERON:0001893,9.25e-14,29;UBERON:0002780,2.43e-13,39;UBERON:0001890,2.43e-13,39;UBERON:0006240,2.43e-13,39;UBERON:0000956,4.64e-10,21;UBERON:0001869,4.64e-10,21;UBERON:0000203,4.64e-10,21;UBERON:0002619,4.17e-09,17;UBERON:0000025,2.55e-08,114;UBERON:0002021,8.66e-08,10;UBERON:0000411,8.66e-08,10;UBERON:0001950,8.66e-08,10;UBERON:0004111,3.52e-07,122|phase1_expression=1.76163731815273,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,1.78590909317247,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51076181570693,0.709638518536602,1.28482726513177,0,4.57852828398938,1.31811709640683,1.94429899074283,1.1198913730029,0,0,0,0,1.80081605225163,4.29800159908135,3.6097046459421,23.4687094597133,29.0945038599618,22.1840991227163,0.338844532069132,1.77858959222228,0,0,0,0.299600110518405,0.768436610643109,5.59923906465779,5.26523159493594,8.41299845405528,10.5690864229407,12.1477697523387,10.1667363348412,7.95517409451362,9.19218786610021,6.60695285996332,7.91661496128164,7.68032666281217,27.8280067110709,34.0334034200964,26.045668527838,6.70039197603314,8.4414391504752,5.50073691996516,28.8736013764194,26.338760947834,27.9599168737951,0.530083353332288,0.604572480854284,3.18850937571846,0,0,0,0,0,2.38755514223978,0.681721290312231,0.519572009205738,0.35333957451034,2.25349471642689,0,0,0,0.432982082022428,0,1.01104889002957,0.68510327831436,0.258937883647172,0.29688427812965,2.94925055502431,2.13125834818499,1.15307748628029,1.05505848386836,1.88141931417128,0,0,0.86759614151947,0.884610551949874,8.8971767471075,2.65009822152472,1.93950101254089,3.72783522436244,6.73395833126558,7.95897485891129,0.255457055208591,0,0,0,8.98743836428936,5.03250663100489,11.5602003943835,7.47444576826789,11.2514801225345,6.2336413367868,6.97637431191358,2.13862664085664,0.124406970610093,0.252722758433675,2.10441855886474,4.81445638962004,6.20735681970377,7.38254732201932,6.93242162044289,10.0694018743965,11.7864622662062,11.7127155699661,4.9153640440413,3.66465587985832,4.53854592402766,5.45448484908241,2.84954452155847,2.22437799380478,5.2237824978325,2.26360350048738,1.59227413454795,0,0,0,7.04227626620706,7.27030785941398,8.10279276574567,10.180023630164,5.90292695242211,6.17068451549513,9.06882384526591,5.36546802799238,4.43708300995244,8.72167204541446,8.37254066803386,5.10733500138891,4.82459958503597,6.36695334344047,3.75777972529041,4.20579897128254,15.1269780197548,0.330418782983798,0,2.77274725695804,2.32236671860439,1.9330119198314,1.00841762311671,0.889512175379481,0.190225626112559,1.42358718463353,0.329397909448022,0.754005626400808,1.1937388322469,0.38992817423824,0,0.864552199498777,0.199141273254367,1.32767530667157,1.5994791765362,1.1270773567308,1.4255592949172,0.969762435838129,1.1221731182451,1.58091342810643,0.885660887877613,1.255989822731,0.987177311374404,0,0.333690211432188,0.589676985339609,0.449724224769707,0.202860121388503,0.241177159752417,0.25462585178142,0.575392274901621,0.324270453550071,0.549122826376163,0,0,0.312037673114561,0,0.179397413521912,0,0.554259570499814,3.7898282354097,1.79261474086228,2.03694102930226,0.938760993154008,1.17254380209271,0.714130922658041,1.36593553500459,1.41871629695572,1.10732344824387,1.2756381492599,1.3109065177259,1.55416483679306,0.723245292907558,0,0,0.983528546038072,0.551873492609465,3.85321415970701,8.08760637486202,0.163934945376675,6.5642441073137,6.31016438832513,7.41833614163613,6.24727853425117,2.86762557543062,6.46116154838943,3.39691836946599,7.69140333182299,5.55286130031493,6.32460444714438,2.89189184779626,0.709700426041343,1.06839362200353,1.62886959353576,1.81467135269789,0,0.971122544619926,0.302323556964751,0.565815239267694,0.295301892880773,0.922305443831782,0.516856586336442,1.81766864738753,0,0,1.05418608574999,1.03135543248187,2.04263763452273,4.86164953884538,1.81102157295856,4.28674070063185,1.24138163549592,1.42695054081656,2.13913726782757,1.2178597964584,0,0.42366414172764,0.220528398054962,0.65954501176592,1.93757312035087,2.29189114726992,0.596861720015682,0.820704498725306,0,4.63563255026274,0.170870880797853,0.619160603889667,1.29636169158798,0,0.136694227721025,0.228778173206523,0.169978429993855,0,0.414599921413271,0,2.21435195506795,2.23651413839534,1.08005340821801,0.418176592028937,0.436725127492355,0.674321731924103,0.909188012978695,0.26175594198403,0.129614973291793,0,0,1.04661582230785,1.48912641411388,1.55560950675238,1.80823752868824,1.01373675294467,1.29092962510329,1.0416350787516,1.78260885523708,0.483168241652012,0.288030006257865,0,1.01362607645082,0.308132871494482,0.25984164595559,0.179026695667481,0,0.120195449519969,0,0.100966449948148,0.0762068066549998,0,0.292373642219257,0.0962118416403295,0.116876902181569,4.53460767230423,0,0,0,0.579568782096571,0,0.73260649706906,0,0.501572104035363,20.8958181768315,19.3336599333014,16.0410743763031,16.497905504994,10.9613203163303,13.5970901530146,16.8755625057951,10.3573876741571,9.5159905886683,11.39072685854,6.12345350746642,11.5717213286299,6.14640980714883,7.53630822911712,10.0614318061432,6.98605332110054,8.44537565646138,11.1258930909003,11.2321723357135,11.1186773176071,14.7017993936339,11.1289541417785,7.86588662747012,8.25924466022814,9.47685237767619,9.52587382566147,8.22778714208474,8.68091492086673,8.65380391686944,11.6287146906174,6.85738504770831,8.87379030796687,6.43777712857767,10.4649419975277,10.257922465271,10.0691383391095,9.14639864363863,7.89209134313529,7.87663860305998,7.85599180320834,8.30445126869219,8.0773675547962,6.95692773388472,6.97215785336847,7.13754460630223,7.74412791607632,6.78401664491684,5.37177635120746,8.99055160723564,7.27951683094401,10.434052602919|short_description=p2@Pkia}} | ||
|EntrezGene=18767 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=P63248,Q3UTL0 | |||
|association_with_transcript=69bp_to_ENSMUST00000028999,NM_008862,uc008oof.1_5end | |||
|description=CAGE_peak_2_at_Pkia_5end | |||
|id=chr3:7366673..7366694,+ | |||
|ontology_enrichment_celltype=CL:0000540!5.85e-13!33;CL:0000047!5.85e-13!33;CL:0000031!5.85e-13!33;CL:0000404!5.85e-13!33;CL:0000393!4.22e-12!39;CL:0000211!4.22e-12!39;CL:0000117!9.22e-12!23;CL:0000337!9.22e-12!23;CL:0000221!3.27e-09!44;CL:0000133!3.27e-09!44;CL:0002319!3.55e-09!43;CL:0000055!2.76e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.30e-14,33;CL:0000047,5.30e-14,33;CL:0000031,5.30e-14,33;CL:0000404,5.30e-14,33;CL:0000393,1.02e-12,39;CL:0000211,1.02e-12,39;CL:0000117,1.08e-12,23;CL:0000337,1.08e-12,23;CL:0000221,2.40e-09,44;CL:0000133,2.40e-09,44;CL:0002319,2.65e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.23e-19!73;UBERON:0005743!2.23e-19!73;UBERON:0000073!1.29e-18!75;UBERON:0001016!1.29e-18!75;UBERON:0002346!3.47e-18!71;UBERON:0003075!3.47e-18!71;UBERON:0007284!3.47e-18!71;UBERON:0004121!7.00e-18!102;UBERON:0000924!7.00e-18!102;UBERON:0006601!7.00e-18!102;UBERON:0001049!2.67e-16!52;UBERON:0005068!2.67e-16!52;UBERON:0006241!2.67e-16!52;UBERON:0007135!2.67e-16!52;UBERON:0000033!4.25e-16!63;UBERON:0002020!5.59e-16!34;UBERON:0003056!1.79e-15!49;UBERON:0000955!4.33e-14!50;UBERON:0006238!4.33e-14!50;UBERON:0002616!4.89e-14!49;UBERON:0003080!8.54e-13!40;UBERON:0002791!9.74e-13!29;UBERON:0003528!9.74e-13!29;UBERON:0001893!9.74e-13!29;UBERON:0002780!2.36e-12!39;UBERON:0001890!2.36e-12!39;UBERON:0006240!2.36e-12!39;UBERON:0000956!2.39e-09!21;UBERON:0001869!2.39e-09!21;UBERON:0000203!2.39e-09!21;UBERON:0000025!9.34e-09!114;UBERON:0002619!1.79e-08!17;UBERON:0000468!7.41e-08!333;UBERON:0004111!1.03e-07!122;UBERON:0002021!2.90e-07!10;UBERON:0000411!2.90e-07!10;UBERON:0001950!2.90e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.09e-25,92;UBERON:0002346,6.26e-22,64;UBERON:0003075,6.26e-22,64;UBERON:0007284,6.26e-22,64;UBERON:0001017,6.76e-21,73;UBERON:0001016,1.69e-19,75;UBERON:0004121,7.83e-19,95;UBERON:0000924,7.83e-19,95;UBERON:0006601,7.83e-19,95;UBERON:0000073,8.01e-19,54;UBERON:0010371,2.92e-18,73;UBERON:0001049,7.08e-18,52;UBERON:0005068,7.08e-18,52;UBERON:0006241,7.08e-18,52;UBERON:0007135,7.08e-18,52;UBERON:0002020,2.68e-17,34;UBERON:0003056,9.57e-17,49;UBERON:0000955,2.08e-14,47;UBERON:0006238,2.08e-14,47;UBERON:0002616,2.35e-14,46;UBERON:0003080,8.02e-14,40;UBERON:0003528,9.25e-14,29;UBERON:0002791,9.25e-14,29;UBERON:0001893,9.25e-14,29;UBERON:0002780,2.43e-13,39;UBERON:0001890,2.43e-13,39;UBERON:0006240,2.43e-13,39;UBERON:0000956,4.64e-10,21;UBERON:0001869,4.64e-10,21;UBERON:0000203,4.64e-10,21;UBERON:0002619,4.17e-09,17;UBERON:0000025,2.55e-08,114;UBERON:0002021,8.66e-08,10;UBERON:0000411,8.66e-08,10;UBERON:0001950,8.66e-08,10;UBERON:0004111,3.52e-07,122 | |||
|phase1_expression=1.76163731815273,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,1.78590909317247,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51076181570693,0.709638518536602,1.28482726513177,0,4.57852828398938,1.31811709640683,1.94429899074283,1.1198913730029,0,0,0,0,1.80081605225163,4.29800159908135,3.6097046459421,23.4687094597133,29.0945038599618,22.1840991227163,0.338844532069132,1.77858959222228,0,0,0,0.299600110518405,0.768436610643109,5.59923906465779,5.26523159493594,8.41299845405528,10.5690864229407,12.1477697523387,10.1667363348412,7.95517409451362,9.19218786610021,6.60695285996332,7.91661496128164,7.68032666281217,27.8280067110709,34.0334034200964,26.045668527838,6.70039197603314,8.4414391504752,5.50073691996516,28.8736013764194,26.338760947834,27.9599168737951,0.530083353332288,0.604572480854284,3.18850937571846,0,0,0,0,0,2.38755514223978,0.681721290312231,0.519572009205738,0.35333957451034,2.25349471642689,0,0,0,0.432982082022428,0,1.01104889002957,0.68510327831436,0.258937883647172,0.29688427812965,2.94925055502431,2.13125834818499,1.15307748628029,1.05505848386836,1.88141931417128,0,0,0.86759614151947,0.884610551949874,8.8971767471075,2.65009822152472,1.93950101254089,3.72783522436244,6.73395833126558,7.95897485891129,0.255457055208591,0,0,0,8.98743836428936,5.03250663100489,11.5602003943835,7.47444576826789,11.2514801225345,6.2336413367868,6.97637431191358,2.13862664085664,0.124406970610093,0.252722758433675,2.10441855886474,4.81445638962004,6.20735681970377,7.38254732201932,6.93242162044289,10.0694018743965,11.7864622662062,11.7127155699661,4.9153640440413,3.66465587985832,4.53854592402766,5.45448484908241,2.84954452155847,2.22437799380478,5.2237824978325,2.26360350048738,1.59227413454795,0,0,0,7.04227626620706,7.27030785941398,8.10279276574567,10.180023630164,5.90292695242211,6.17068451549513,9.06882384526591,5.36546802799238,4.43708300995244,8.72167204541446,8.37254066803386,5.10733500138891,4.82459958503597,6.36695334344047,3.75777972529041,4.20579897128254,15.1269780197548,0.330418782983798,0,2.77274725695804,2.32236671860439,1.9330119198314,1.00841762311671,0.889512175379481,0.190225626112559,1.42358718463353,0.329397909448022,0.754005626400808,1.1937388322469,0.38992817423824,0,0.864552199498777,0.199141273254367,1.32767530667157,1.5994791765362,1.1270773567308,1.4255592949172,0.969762435838129,1.1221731182451,1.58091342810643,0.885660887877613,1.255989822731,0.987177311374404,0,0.333690211432188,0.589676985339609,0.449724224769707,0.202860121388503,0.241177159752417,0.25462585178142,0.575392274901621,0.324270453550071,0.549122826376163,0,0,0.312037673114561,0,0.179397413521912,0,0.554259570499814,3.7898282354097,1.79261474086228,2.03694102930226,0.938760993154008,1.17254380209271,0.714130922658041,1.36593553500459,1.41871629695572,1.10732344824387,1.2756381492599,1.3109065177259,1.55416483679306,0.723245292907558,0,0,0.983528546038072,0.551873492609465,3.85321415970701,8.08760637486202,0.163934945376675,6.5642441073137,6.31016438832513,7.41833614163613,6.24727853425117,2.86762557543062,6.46116154838943,3.39691836946599,7.69140333182299,5.55286130031493,6.32460444714438,2.89189184779626,0.709700426041343,1.06839362200353,1.62886959353576,1.81467135269789,0,0.971122544619926,0.302323556964751,0.565815239267694,0.295301892880773,0.922305443831782,0.516856586336442,1.81766864738753,0,0,1.05418608574999,1.03135543248187,2.04263763452273,4.86164953884538,1.81102157295856,4.28674070063185,1.24138163549592,1.42695054081656,2.13913726782757,1.2178597964584,0,0.42366414172764,0.220528398054962,0.65954501176592,1.93757312035087,2.29189114726992,0.596861720015682,0.820704498725306,0,4.63563255026274,0.170870880797853,0.619160603889667,1.29636169158798,0,0.136694227721025,0.228778173206523,0.169978429993855,0,0.414599921413271,0,2.21435195506795,2.23651413839534,1.08005340821801,0.418176592028937,0.436725127492355,0.674321731924103,0.909188012978695,0.26175594198403,0.129614973291793,0,0,1.04661582230785,1.48912641411388,1.55560950675238,1.80823752868824,1.01373675294467,1.29092962510329,1.0416350787516,1.78260885523708,0.483168241652012,0.288030006257865,0,1.01362607645082,0.308132871494482,0.25984164595559,0.179026695667481,0,0.120195449519969,0,0.100966449948148,0.0762068066549998,0,0.292373642219257,0.0962118416403295,0.116876902181569,4.53460767230423,0,0,0,0.579568782096571,0,0.73260649706906,0,0.501572104035363,20.8958181768315,19.3336599333014,16.0410743763031,16.497905504994,10.9613203163303,13.5970901530146,16.8755625057951,10.3573876741571,9.5159905886683,11.39072685854,6.12345350746642,11.5717213286299,6.14640980714883,7.53630822911712,10.0614318061432,6.98605332110054,8.44537565646138,11.1258930909003,11.2321723357135,11.1186773176071,14.7017993936339,11.1289541417785,7.86588662747012,8.25924466022814,9.47685237767619,9.52587382566147,8.22778714208474,8.68091492086673,8.65380391686944,11.6287146906174,6.85738504770831,8.87379030796687,6.43777712857767,10.4649419975277,10.257922465271,10.0691383391095,9.14639864363863,7.89209134313529,7.87663860305998,7.85599180320834,8.30445126869219,8.0773675547962,6.95692773388472,6.97215785336847,7.13754460630223,7.74412791607632,6.78401664491684,5.37177635120746,8.99055160723564,7.27951683094401,10.434052602919 | |||
|short_description=p2@Pkia | |||
}} |
Revision as of 02:31, 14 September 2013
Short description: | p2@Pkia |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pkia_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 69bp_to_ENSMUST00000028999, NM_008862, uc008oof.1_5end |
EntrezGene: | Pkia |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.30e-14 | 33 |
neuronal stem cell | 5.30e-14 | 33 |
neuroblast | 5.30e-14 | 33 |
electrically signaling cell | 5.30e-14 | 33 |
electrically responsive cell | 1.02e-12 | 39 |
electrically active cell | 1.02e-12 | 39 |
CNS neuron (sensu Vertebrata) | 1.08e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.08e-12 | 23 |
ectodermal cell | 2.40e-09 | 44 |
neurectodermal cell | 2.40e-09 | 44 |
neural cell | 2.65e-09 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.