FFCP PHASE1:Mm9::chr3:28164152..28164169,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=558|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:28164152..28164169,-|id=chr3:28164152..28164169,-|ontology_enrichment_celltype=CL:0002319!7.59e-30!43;CL:0000221!6.27e-29!44;CL:0000133!6.27e-29!44;CL:0000055!3.32e-24!50;CL:0000540!9.21e-24!33;CL:0000047!9.21e-24!33;CL:0000031!9.21e-24!33;CL:0000404!9.21e-24!33;CL:0000393!7.55e-19!39;CL:0000211!7.55e-19!39;CL:0002321!2.06e-14!70;CL:0000220!2.06e-14!70;CL:0000107!6.83e-13!9;CL:0000117!4.00e-12!23;CL:0000337!4.00e-12!23;CL:0000333!8.41e-07!10;CL:0000095!8.41e-07!10;CL:0000243!8.41e-07!10;CL:0000123!8.41e-07!10;CL:0000125!8.41e-07!10;CL:0000030!8.41e-07!10;CL:0000339!8.41e-07!10|ontology_enrichment_celltype_v019_2=CL:0002319,1.73e-25,43;CL:0000221,7.10e-25,44;CL:0000133,7.10e-25,44;CL:0002610,3.06e-18,3;CL:0000540,1.81e-16,33;CL:0000047,1.81e-16,33;CL:0000031,1.81e-16,33;CL:0000404,1.81e-16,33;CL:0002321,4.58e-15,70;CL:0000393,9.28e-14,39;CL:0000211,9.28e-14,39;CL:0000878,1.59e-13,2;CL:0000129,1.59e-13,2;CL:0000217,2.11e-13,2;CL:0000328,2.11e-13,2;CL:0002573,2.11e-13,2;CL:0002376,2.11e-13,2;CL:0000218,2.11e-13,2;CL:0000692,2.11e-13,2;CL:0002377,2.11e-13,2;CL:0002375,2.11e-13,2;CL:0002611,9.57e-13,2;CL:0000107,1.30e-10,9;CL:0000333,3.04e-10,10;CL:0000095,3.04e-10,10;CL:0000243,3.04e-10,10;CL:0000123,3.04e-10,10;CL:0000125,3.04e-10,10;CL:0000030,3.04e-10,10;CL:0000339,3.04e-10,10;CL:0000215,3.12e-09,3;CL:0000117,8.53e-09,23;CL:0000337,8.53e-09,23;CL:0000723,7.36e-08,91;CL:0000048,7.36e-08,91;CL:0000034,2.83e-07,97;CL:0002194,3.44e-07,4;CL:0000766,3.44e-07,4;CL:0000234,3.44e-07,4;CL:0000576,3.44e-07,4;CL:0000235,3.44e-07,4;CL:0000864,3.44e-07,4;CL:0002009,3.44e-07,4;CL:0000040,3.44e-07,4;CL:0000559,3.44e-07,4|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.10e-31!102;UBERON:0000924!2.10e-31!102;UBERON:0006601!2.10e-31!102;UBERON:0000073!1.86e-28!75;UBERON:0001016!1.86e-28!75;UBERON:0001017!6.98e-26!73;UBERON:0005743!6.98e-26!73;UBERON:0002346!1.15e-17!71;UBERON:0003075!1.15e-17!71;UBERON:0007284!1.15e-17!71;UBERON:0000010!6.88e-16!11;UBERON:0002410!6.83e-13!9;UBERON:0000033!9.18e-13!63;UBERON:0001049!1.08e-10!52;UBERON:0005068!1.08e-10!52;UBERON:0006241!1.08e-10!52;UBERON:0007135!1.08e-10!52;UBERON:0003076!3.02e-10!12;UBERON:0003057!3.02e-10!12;UBERON:0002616!8.80e-09!49;UBERON:0000955!1.74e-08!50;UBERON:0006238!1.74e-08!50;UBERON:0003056!2.50e-08!49;UBERON:0002240!3.03e-08!6;UBERON:0005174!3.03e-08!6;UBERON:0001137!3.03e-08!6;UBERON:0007811!8.47e-08!86;UBERON:0002020!3.75e-07!34;UBERON:0001948!4.41e-07!5;UBERON:0002315!4.41e-07!5;UBERON:0005085!4.48e-07!13;UBERON:0000970!8.92e-07!9;UBERON:0000019!8.92e-07!9;UBERON:0000047!8.92e-07!9;UBERON:0004088!8.92e-07!9;UBERON:0002104!8.92e-07!9;UBERON:0001456!8.92e-07!9;UBERON:0003072!8.92e-07!9;UBERON:0003071!8.92e-07!9;UBERON:0004128!8.92e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000010,3.85e-19,11;UBERON:0004684,3.06e-18,3;UBERON:0002275,3.06e-18,3;UBERON:0001016,5.92e-14,75;UBERON:0002256,9.57e-13,2;UBERON:0004121,2.01e-12,95;UBERON:0000924,2.01e-12,95;UBERON:0006601,2.01e-12,95;UBERON:0002410,1.30e-10,9;UBERON:0001017,3.50e-10,73;UBERON:0000011,9.29e-09,3;UBERON:0000013,1.21e-08,3|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439372365468944,0.388859798148567,0.279972843250725,0,0,0,0,0,0,0,0,0.528990979272033,0,0,0,0,0,0,4.19440154725767,9.98967593836042,0.207379224616955,0.810035629990144,0.630974884054146,2.28520787523043,1.32521124570968,0,0.191690942036473,0,2.20231761998777,1.53224805702225,1.68967186581868,0,0.0914876436024097,0,1.11673199600552,0,0.763991238884051,0.589257170947335,0.284743361598206,0.186399445825301,2.34751199332871,4.38315048619356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0.878342391034642,0.41889341362691,0,0,0,0,0.149790639404823,0.457500602818626,0,0,0.511430914660661,0.41557608911912,0.811206315338788,0,0,0.252722758433675,0.420883711772948,0.260240885925407,0,0,0.30140963567143,0.884474488967262,1.2811372028485,0.937017245597288,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.205809224758569,0,0,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0.144649058581512,0,0,0.491764273019036,0,0.481651769963376,0.820481806145422,0,0.252470927204373,0.315508219416257,0.780877488593277,0.861693590931196,0.955875191810208,1.55959071857676,1.69845918473299,1.21443210502468,0.584511715822624,1.97643888973262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=558 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:28164152..28164169,- | |||
|id=chr3:28164152..28164169,- | |||
|ontology_enrichment_celltype=CL:0002319!7.59e-30!43;CL:0000221!6.27e-29!44;CL:0000133!6.27e-29!44;CL:0000055!3.32e-24!50;CL:0000540!9.21e-24!33;CL:0000047!9.21e-24!33;CL:0000031!9.21e-24!33;CL:0000404!9.21e-24!33;CL:0000393!7.55e-19!39;CL:0000211!7.55e-19!39;CL:0002321!2.06e-14!70;CL:0000220!2.06e-14!70;CL:0000107!6.83e-13!9;CL:0000117!4.00e-12!23;CL:0000337!4.00e-12!23;CL:0000333!8.41e-07!10;CL:0000095!8.41e-07!10;CL:0000243!8.41e-07!10;CL:0000123!8.41e-07!10;CL:0000125!8.41e-07!10;CL:0000030!8.41e-07!10;CL:0000339!8.41e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.73e-25,43;CL:0000221,7.10e-25,44;CL:0000133,7.10e-25,44;CL:0002610,3.06e-18,3;CL:0000540,1.81e-16,33;CL:0000047,1.81e-16,33;CL:0000031,1.81e-16,33;CL:0000404,1.81e-16,33;CL:0002321,4.58e-15,70;CL:0000393,9.28e-14,39;CL:0000211,9.28e-14,39;CL:0000878,1.59e-13,2;CL:0000129,1.59e-13,2;CL:0000217,2.11e-13,2;CL:0000328,2.11e-13,2;CL:0002573,2.11e-13,2;CL:0002376,2.11e-13,2;CL:0000218,2.11e-13,2;CL:0000692,2.11e-13,2;CL:0002377,2.11e-13,2;CL:0002375,2.11e-13,2;CL:0002611,9.57e-13,2;CL:0000107,1.30e-10,9;CL:0000333,3.04e-10,10;CL:0000095,3.04e-10,10;CL:0000243,3.04e-10,10;CL:0000123,3.04e-10,10;CL:0000125,3.04e-10,10;CL:0000030,3.04e-10,10;CL:0000339,3.04e-10,10;CL:0000215,3.12e-09,3;CL:0000117,8.53e-09,23;CL:0000337,8.53e-09,23;CL:0000723,7.36e-08,91;CL:0000048,7.36e-08,91;CL:0000034,2.83e-07,97;CL:0002194,3.44e-07,4;CL:0000766,3.44e-07,4;CL:0000234,3.44e-07,4;CL:0000576,3.44e-07,4;CL:0000235,3.44e-07,4;CL:0000864,3.44e-07,4;CL:0002009,3.44e-07,4;CL:0000040,3.44e-07,4;CL:0000559,3.44e-07,4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.10e-31!102;UBERON:0000924!2.10e-31!102;UBERON:0006601!2.10e-31!102;UBERON:0000073!1.86e-28!75;UBERON:0001016!1.86e-28!75;UBERON:0001017!6.98e-26!73;UBERON:0005743!6.98e-26!73;UBERON:0002346!1.15e-17!71;UBERON:0003075!1.15e-17!71;UBERON:0007284!1.15e-17!71;UBERON:0000010!6.88e-16!11;UBERON:0002410!6.83e-13!9;UBERON:0000033!9.18e-13!63;UBERON:0001049!1.08e-10!52;UBERON:0005068!1.08e-10!52;UBERON:0006241!1.08e-10!52;UBERON:0007135!1.08e-10!52;UBERON:0003076!3.02e-10!12;UBERON:0003057!3.02e-10!12;UBERON:0002616!8.80e-09!49;UBERON:0000955!1.74e-08!50;UBERON:0006238!1.74e-08!50;UBERON:0003056!2.50e-08!49;UBERON:0002240!3.03e-08!6;UBERON:0005174!3.03e-08!6;UBERON:0001137!3.03e-08!6;UBERON:0007811!8.47e-08!86;UBERON:0002020!3.75e-07!34;UBERON:0001948!4.41e-07!5;UBERON:0002315!4.41e-07!5;UBERON:0005085!4.48e-07!13;UBERON:0000970!8.92e-07!9;UBERON:0000019!8.92e-07!9;UBERON:0000047!8.92e-07!9;UBERON:0004088!8.92e-07!9;UBERON:0002104!8.92e-07!9;UBERON:0001456!8.92e-07!9;UBERON:0003072!8.92e-07!9;UBERON:0003071!8.92e-07!9;UBERON:0004128!8.92e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,3.85e-19,11;UBERON:0004684,3.06e-18,3;UBERON:0002275,3.06e-18,3;UBERON:0001016,5.92e-14,75;UBERON:0002256,9.57e-13,2;UBERON:0004121,2.01e-12,95;UBERON:0000924,2.01e-12,95;UBERON:0006601,2.01e-12,95;UBERON:0002410,1.30e-10,9;UBERON:0001017,3.50e-10,73;UBERON:0000011,9.29e-09,3;UBERON:0000013,1.21e-08,3 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439372365468944,0.388859798148567,0.279972843250725,0,0,0,0,0,0,0,0,0.528990979272033,0,0,0,0,0,0,4.19440154725767,9.98967593836042,0.207379224616955,0.810035629990144,0.630974884054146,2.28520787523043,1.32521124570968,0,0.191690942036473,0,2.20231761998777,1.53224805702225,1.68967186581868,0,0.0914876436024097,0,1.11673199600552,0,0.763991238884051,0.589257170947335,0.284743361598206,0.186399445825301,2.34751199332871,4.38315048619356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0.878342391034642,0.41889341362691,0,0,0,0,0.149790639404823,0.457500602818626,0,0,0.511430914660661,0.41557608911912,0.811206315338788,0,0,0.252722758433675,0.420883711772948,0.260240885925407,0,0,0.30140963567143,0.884474488967262,1.2811372028485,0.937017245597288,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.205809224758569,0,0,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0.144649058581512,0,0,0.491764273019036,0,0.481651769963376,0.820481806145422,0,0.252470927204373,0.315508219416257,0.780877488593277,0.861693590931196,0.955875191810208,1.55959071857676,1.69845918473299,1.21443210502468,0.584511715822624,1.97643888973262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0,0,0,0,0.25347929989024,0.188626341386076,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0.429742108096597,0,0,0 | |||
|short_description=p@chr3:28164152..28164169,- | |||
}} |
Revision as of 02:03, 14 September 2013
Short description: | p@chr3:28164152..28164169, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:28164152..28164169, - |
Coexpression cluster: | MCL_coexpression_mm9:558 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peripheral nervous system | 3.85e-19 | 11 |
raphe nuclei | 3.06e-18 | 3 |
reticular formation | 3.06e-18 | 3 |
nervous system | 5.92e-14 | 75 |
dorsal horn of spinal cord | 9.57e-13 | 2 |
ectoderm-derived structure | 2.01e-12 | 95 |
ectoderm | 2.01e-12 | 95 |
presumptive ectoderm | 2.01e-12 | 95 |
autonomic nervous system | 1.30e-10 | 9 |
central nervous system | 3.50e-10 | 73 |
parasympathetic nervous system | 9.29e-09 | 3 |
sympathetic nervous system | 1.21e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.