FFCP PHASE1:Mm9::chr3:146475915..146475947,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18749|HGNC=|MCL_coexpression_id=13|UniProt=P68181|association_with_transcript=0bp_to_ENSMUST00000102515_5end|description=CAGE_peak_7_at_Prkacb_5end|id=chr3:146475915..146475947,-|ontology_enrichment_celltype=CL:0000117!6.28e-15!23;CL:0000337!6.28e-15!23;CL:0000540!4.86e-14!33;CL:0000047!4.86e-14!33;CL:0000031!4.86e-14!33;CL:0000404!4.86e-14!33;CL:0000393!1.43e-12!39;CL:0000211!1.43e-12!39;CL:0000221!3.48e-11!44;CL:0000133!3.48e-11!44;CL:0002319!5.90e-11!43;CL:0000055!9.21e-10!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.37e-15,23;CL:0000337,1.37e-15,23;CL:0000540,1.03e-14,33;CL:0000047,1.03e-14,33;CL:0000031,1.03e-14,33;CL:0000404,1.03e-14,33;CL:0000393,3.11e-13,39;CL:0000211,3.11e-13,39;CL:0000221,1.64e-11,44;CL:0000133,1.64e-11,44;CL:0002319,2.85e-11,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.60e-20!75;UBERON:0001016!7.60e-20!75;UBERON:0001017!9.96e-20!73;UBERON:0005743!9.96e-20!73;UBERON:0004121!7.12e-18!102;UBERON:0000924!7.12e-18!102;UBERON:0006601!7.12e-18!102;UBERON:0001049!2.60e-17!52;UBERON:0005068!2.60e-17!52;UBERON:0006241!2.60e-17!52;UBERON:0007135!2.60e-17!52;UBERON:0002346!8.41e-17!71;UBERON:0003075!8.41e-17!71;UBERON:0007284!8.41e-17!71;UBERON:0000955!8.10e-16!50;UBERON:0006238!8.10e-16!50;UBERON:0000033!2.73e-15!63;UBERON:0002616!2.97e-15!49;UBERON:0002020!1.60e-13!34;UBERON:0003080!6.19e-13!40;UBERON:0002780!2.28e-12!39;UBERON:0001890!2.28e-12!39;UBERON:0006240!2.28e-12!39;UBERON:0003056!2.73e-12!49;UBERON:0000025!3.65e-11!114;UBERON:0004111!1.33e-10!122;UBERON:0002791!2.36e-10!29;UBERON:0003528!2.36e-10!29;UBERON:0001893!2.36e-10!29;UBERON:0000153!6.28e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.36e-20,92;UBERON:0001016,2.98e-20,75;UBERON:0001017,4.00e-20,73;UBERON:0000073,1.68e-18,54;UBERON:0004121,6.50e-18,95;UBERON:0000924,6.50e-18,95;UBERON:0006601,6.50e-18,95;UBERON:0001049,3.18e-17,52;UBERON:0005068,3.18e-17,52;UBERON:0006241,3.18e-17,52;UBERON:0007135,3.18e-17,52;UBERON:0002346,5.03e-17,64;UBERON:0003075,5.03e-17,64;UBERON:0007284,5.03e-17,64;UBERON:0010371,1.45e-15,73;UBERON:0000955,7.85e-14,47;UBERON:0006238,7.85e-14,47;UBERON:0002020,1.26e-13,34;UBERON:0002616,2.87e-13,46;UBERON:0003080,7.17e-13,40;UBERON:0002780,2.76e-12,39;UBERON:0001890,2.76e-12,39;UBERON:0006240,2.76e-12,39;UBERON:0003056,2.90e-12,49;UBERON:0003528,2.44e-10,29;UBERON:0002791,2.44e-10,29;UBERON:0001893,2.44e-10,29;UBERON:0000025,5.59e-10,114;UBERON:0004111,1.41e-09,122|phase1_expression=1.92178616525753,0,0,0,0,0.503637815735669,0.467225281191051,0.258246646883153,0.281577444303333,0.234064526321993,0.34243593645101,0.558405112967355,0.684802919724823,0.174840804837995,0.333109761815663,0.404950534779652,0.699561878128147,1.10411757875383,1.50825876966313,0,2.29616883407888,0.893618560807968,0.783599367416806,0,0,0,0,0.215471232685889,0.190023419456374,0.504060259519861,0,0,0.61506478758457,0,0.288851619751275,0,0.408338712524738,0.418531630736908,0.7813353445238,0,1.17646297606203,2.04913645487534,0.485510353031154,0.377690453926732,1.21652317463417,1.83546752161682,0.782391344348039,2.39827672018491,0.878744730937887,3.11087838518853,2.37976916763116,0,1.67782606057736,0,1.00828139742739,2.57259436035947,1.14613375975503,2.06268836910977,7.48570905180512,5.28990979272033,5.07065122804943,2.03306719241479,0.889294796111139,0.449949858640699,0.988866362566974,0.7104801149461,0.599200221036809,0.384218305321555,4.45865332926454,5.94026128659439,4.83747411108179,10.8547374073445,6.62605622854841,6.00204916153275,4.69642807989358,1.83843757322004,4.40463523997555,8.81042632787795,7.98753972932466,8.17694983927202,9.42322729104819,7.8137005583514,6.14202597803038,8.4414391504752,10.2374826010463,6.77645746589436,10.9626194215309,8.01517617048792,2.12033341332915,1.66257432234928,0.869593466105033,0.860423876981386,2.03991400112325,0.539703191637817,0,1.34408066129201,1.96622188184453,1.70430322578058,1.81850203222008,1.7666978725517,2.39433813620357,0,0,0,0.432982082022428,0.253359865475099,0,1.25602267690966,0,2.67195850316685,2.4287945747259,1.82679286987285,0.922461989024234,1.3565037649736,1.29347577849275,1.75933227861546,0,0.722996784599558,0,1.7794353494215,2.20841518460394,0,1.86391761218122,2.04946557908083,1.46612694769419,1.53274233125155,1.55759661857696,2.39961092397363,1.14363204365758,5.39246301857362,1.83000241127451,7.03664371832041,3.30266208365325,2.81287003063364,2.90903262383384,3.56930778749067,4.68461073711455,0.870848794270651,0.758168275301024,1.05220927943237,1.04096354370163,1.37941262660084,3.24111833649629,2.41127708537144,2.65342346690179,1.40925092313335,1.59292931751539,1.29351685369508,3.88022387279116,2.08016688184601,2.81521798662318,1.53437012699302,1.11218899690239,1.39300866608867,2.46938563689532,2.7864797354589,0.702213187313235,1.54408744268829,0.852490498186778,3.10688658803253,1.17263029990548,1.80062061461015,4.49814997611899,1.37734962223183,2.31400669331067,2.325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| ||
|EntrezGene=18749 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=P68181 | |||
|association_with_transcript=0bp_to_ENSMUST00000102515_5end | |||
|description=CAGE_peak_7_at_Prkacb_5end | |||
|id=chr3:146475915..146475947,- | |||
|ontology_enrichment_celltype=CL:0000117!6.28e-15!23;CL:0000337!6.28e-15!23;CL:0000540!4.86e-14!33;CL:0000047!4.86e-14!33;CL:0000031!4.86e-14!33;CL:0000404!4.86e-14!33;CL:0000393!1.43e-12!39;CL:0000211!1.43e-12!39;CL:0000221!3.48e-11!44;CL:0000133!3.48e-11!44;CL:0002319!5.90e-11!43;CL:0000055!9.21e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.37e-15,23;CL:0000337,1.37e-15,23;CL:0000540,1.03e-14,33;CL:0000047,1.03e-14,33;CL:0000031,1.03e-14,33;CL:0000404,1.03e-14,33;CL:0000393,3.11e-13,39;CL:0000211,3.11e-13,39;CL:0000221,1.64e-11,44;CL:0000133,1.64e-11,44;CL:0002319,2.85e-11,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.60e-20!75;UBERON:0001016!7.60e-20!75;UBERON:0001017!9.96e-20!73;UBERON:0005743!9.96e-20!73;UBERON:0004121!7.12e-18!102;UBERON:0000924!7.12e-18!102;UBERON:0006601!7.12e-18!102;UBERON:0001049!2.60e-17!52;UBERON:0005068!2.60e-17!52;UBERON:0006241!2.60e-17!52;UBERON:0007135!2.60e-17!52;UBERON:0002346!8.41e-17!71;UBERON:0003075!8.41e-17!71;UBERON:0007284!8.41e-17!71;UBERON:0000955!8.10e-16!50;UBERON:0006238!8.10e-16!50;UBERON:0000033!2.73e-15!63;UBERON:0002616!2.97e-15!49;UBERON:0002020!1.60e-13!34;UBERON:0003080!6.19e-13!40;UBERON:0002780!2.28e-12!39;UBERON:0001890!2.28e-12!39;UBERON:0006240!2.28e-12!39;UBERON:0003056!2.73e-12!49;UBERON:0000025!3.65e-11!114;UBERON:0004111!1.33e-10!122;UBERON:0002791!2.36e-10!29;UBERON:0003528!2.36e-10!29;UBERON:0001893!2.36e-10!29;UBERON:0000153!6.28e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.36e-20,92;UBERON:0001016,2.98e-20,75;UBERON:0001017,4.00e-20,73;UBERON:0000073,1.68e-18,54;UBERON:0004121,6.50e-18,95;UBERON:0000924,6.50e-18,95;UBERON:0006601,6.50e-18,95;UBERON:0001049,3.18e-17,52;UBERON:0005068,3.18e-17,52;UBERON:0006241,3.18e-17,52;UBERON:0007135,3.18e-17,52;UBERON:0002346,5.03e-17,64;UBERON:0003075,5.03e-17,64;UBERON:0007284,5.03e-17,64;UBERON:0010371,1.45e-15,73;UBERON:0000955,7.85e-14,47;UBERON:0006238,7.85e-14,47;UBERON:0002020,1.26e-13,34;UBERON:0002616,2.87e-13,46;UBERON:0003080,7.17e-13,40;UBERON:0002780,2.76e-12,39;UBERON:0001890,2.76e-12,39;UBERON:0006240,2.76e-12,39;UBERON:0003056,2.90e-12,49;UBERON:0003528,2.44e-10,29;UBERON:0002791,2.44e-10,29;UBERON:0001893,2.44e-10,29;UBERON:0000025,5.59e-10,114;UBERON:0004111,1.41e-09,122 | |||
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| |||
|short_description=p7@Prkacb | |||
}} |
Revision as of 01:47, 14 September 2013
Short description: | p7@Prkacb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Prkacb_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000102515_5end |
EntrezGene: | Prkacb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.37e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.37e-15 | 23 |
neuron | 1.03e-14 | 33 |
neuronal stem cell | 1.03e-14 | 33 |
neuroblast | 1.03e-14 | 33 |
electrically signaling cell | 1.03e-14 | 33 |
electrically responsive cell | 3.11e-13 | 39 |
electrically active cell | 3.11e-13 | 39 |
ectodermal cell | 1.64e-11 | 44 |
neurectodermal cell | 1.64e-11 | 44 |
neural cell | 2.85e-11 | 43 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.36e-20 | 92 |
nervous system | 2.98e-20 | 75 |
central nervous system | 4.00e-20 | 73 |
regional part of nervous system | 1.68e-18 | 54 |
ectoderm-derived structure | 6.50e-18 | 95 |
ectoderm | 6.50e-18 | 95 |
presumptive ectoderm | 6.50e-18 | 95 |
neural tube | 3.18e-17 | 52 |
neural rod | 3.18e-17 | 52 |
future spinal cord | 3.18e-17 | 52 |
neural keel | 3.18e-17 | 52 |
neurectoderm | 5.03e-17 | 64 |
neural plate | 5.03e-17 | 64 |
presumptive neural plate | 5.03e-17 | 64 |
ecto-epithelium | 1.45e-15 | 73 |
brain | 7.85e-14 | 47 |
future brain | 7.85e-14 | 47 |
gray matter | 1.26e-13 | 34 |
regional part of brain | 2.87e-13 | 46 |
anterior neural tube | 7.17e-13 | 40 |
regional part of forebrain | 2.76e-12 | 39 |
forebrain | 2.76e-12 | 39 |
future forebrain | 2.76e-12 | 39 |
pre-chordal neural plate | 2.90e-12 | 49 |
brain grey matter | 2.44e-10 | 29 |
regional part of telencephalon | 2.44e-10 | 29 |
telencephalon | 2.44e-10 | 29 |
tube | 5.59e-10 | 114 |
anatomical conduit | 1.41e-09 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.