FFCP PHASE1:Mm9::chr3:107989328..107989342,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=229715|HGNC=|MCL_coexpression_id=251|UniProt=Q80ZD8|association_with_transcript=52bp_to_ENSMUST00000106656_5end|description=CAGE_peak_3_at_Amigo1_5end|id=chr3:107989328..107989342,+|ontology_enrichment_celltype=CL:0000540!5.71e-13!33;CL:0000047!5.71e-13!33;CL:0000031!5.71e-13!33;CL:0000404!5.71e-13!33;CL:0000117!7.37e-11!23;CL:0000337!7.37e-11!23;CL:0000393!2.82e-09!39;CL:0000211!2.82e-09!39;CL:0000221!3.83e-09!44;CL:0000133!3.83e-09!44;CL:0002319!4.81e-09!43|ontology_enrichment_celltype_v019_2=CL:0000117,2.56e-17,23;CL:0000337,2.56e-17,23;CL:0000540,6.17e-13,33;CL:0000047,6.17e-13,33;CL:0000031,6.17e-13,33;CL:0000404,6.17e-13,33;CL:0000393,1.91e-10,39;CL:0000211,1.91e-10,39;CL:0002319,3.57e-09,43;CL:0000221,6.81e-09,44;CL:0000133,6.81e-09,44;CL:0002610,7.74e-09,3;CL:0002614,2.77e-08,3;CL:0000120,5.13e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.62e-22!73;UBERON:0005743!3.62e-22!73;UBERON:0000073!7.24e-22!75;UBERON:0001016!7.24e-22!75;UBERON:0004121!1.28e-20!102;UBERON:0000924!1.28e-20!102;UBERON:0006601!1.28e-20!102;UBERON:0000033!5.35e-18!63;UBERON:0002346!6.03e-18!71;UBERON:0003075!6.03e-18!71;UBERON:0007284!6.03e-18!71;UBERON:0001049!9.45e-17!52;UBERON:0005068!9.45e-17!52;UBERON:0006241!9.45e-17!52;UBERON:0007135!9.45e-17!52;UBERON:0000955!1.05e-16!50;UBERON:0006238!1.05e-16!50;UBERON:0002616!6.93e-16!49;UBERON:0002020!7.85e-14!34;UBERON:0003056!8.74e-13!49;UBERON:0003080!4.37e-12!40;UBERON:0002791!1.80e-11!29;UBERON:0003528!1.80e-11!29;UBERON:0001893!1.80e-11!29;UBERON:0002780!2.26e-11!39;UBERON:0001890!2.26e-11!39;UBERON:0006240!2.26e-11!39;UBERON:0007811!2.70e-09!86;UBERON:0000153!1.23e-08!94;UBERON:0000956!7.93e-08!21;UBERON:0001869!7.93e-08!21;UBERON:0000203!7.93e-08!21;UBERON:0002021!2.70e-07!10;UBERON:0000411!2.70e-07!10;UBERON:0001950!2.70e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.61e-35,73;UBERON:0001016,2.17e-34,75;UBERON:0000073,2.37e-33,54;UBERON:0001049,2.59e-29,52;UBERON:0005068,2.59e-29,52;UBERON:0006241,2.59e-29,52;UBERON:0007135,2.59e-29,52;UBERON:0000955,6.06e-26,47;UBERON:0006238,6.06e-26,47;UBERON:0004121,1.06e-25,95;UBERON:0000924,1.06e-25,95;UBERON:0006601,1.06e-25,95;UBERON:0002616,5.43e-24,46;UBERON:0002346,1.12e-22,64;UBERON:0003075,1.12e-22,64;UBERON:0007284,1.12e-22,64;UBERON:0002020,8.12e-22,34;UBERON:0002021,1.85e-19,10;UBERON:0000411,1.85e-19,10;UBERON:0001950,1.85e-19,10;UBERON:0010371,3.94e-19,73;UBERON:0003528,1.68e-18,29;UBERON:0002791,1.68e-18,29;UBERON:0001893,1.68e-18,29;UBERON:0003080,1.69e-18,40;UBERON:0002780,7.89e-17,39;UBERON:0001890,7.89e-17,39;UBERON:0006240,7.89e-17,39;UBERON:0003056,2.79e-14,49;UBERON:0010314,6.33e-14,92;UBERON:0002619,4.75e-13,17;UBERON:0000956,1.84e-12,21;UBERON:0001869,1.84e-12,21;UBERON:0000203,1.84e-12,21;UBERON:0003076,9.10e-12,12;UBERON:0003057,9.10e-12,12;UBERON:0002950,1.18e-10,4;UBERON:0001891,1.18e-10,4;UBERON:0009616,1.18e-10,4;UBERON:0010286,1.18e-10,4;UBERON:0000025,4.52e-10,114;UBERON:0004111,6.35e-10,122;UBERON:0011216,8.53e-10,194;UBERON:0004684,7.74e-09,3;UBERON:0002275,7.74e-09,3;UBERON:0002038,2.77e-08,3;UBERON:0009663,2.77e-08,3;UBERON:0009661,2.77e-08,3;UBERON:0000125,2.77e-08,3;UBERON:0002308,2.77e-08,3;UBERON:0002420,2.44e-07,8;UBERON:0007245,2.44e-07,8;UBERON:0010009,2.44e-07,8;UBERON:0010011,2.44e-07,8;UBERON:0000454,2.44e-07,8;UBERON:0004733,6.20e-07,6;UBERON:0004732,6.20e-07,6;UBERON:0002028,6.20e-07,6;UBERON:0007277,6.20e-07,6|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0.202475267389826,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.58328969722285,0,0,0,0,0.336093799142464,0,0,0,1.01158230429799,1.05798195854407,1.26766280701236,0,0,0,0,0,0,0,0.207379224616955,0.270011876663381,0.420649922702764,1.14260393761521,1.32521124570968,0.122490799214954,0,0,6.60695285996332,3.95830748064082,3.37934373163736,1.31886287730194,0.457438218012048,1.04182674111352,4.74611098302348,2.25105044012672,2.29197371665215,0.294628585473668,0.142371680799103,1.3047961207771,0,0.226714680320357,0,0,0,0,0,0,0.280888840263504,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0.29688427812965,0.173485326766136,0,0.461230994512117,0,0.117588707135705,0.125666591329675,0,0,0,0.808834249737046,0,0.484875253135222,0,2.04946557908083,2.93225389538837,0,0,0,0.127070227073065,3.89455662452539,0.915001205637253,0,3.47648640384553,4.34716277461562,4.36354893575076,2.92034273521964,0.101839363850316,0,0.252722758433675,0.210441855886474,0,0.459804208866946,0.180062129805349,0.150704817835715,0.136072998302656,0.2562274405697,0,0.517406741478031,0.215567992932842,0,0.351902248327898,0.219195732427575,0,0,0,0.199034266818493,0,0,0,0,0,0,0.23674473558521,0,0,0.232533944750408,0,0,0,0,0,0,0,0,1.05144974282064,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0.397912944082302,0,0,0.216138049874694,0,0.189667900953082,0.228497025219458,0,0,0.193952487167626,0.210407459670956,0.126473074248515,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0.195133647857799,0.157635144106191,0,0,0,0,0.144649058581512,0,0,0,0,4.0137647496948,2.93029216480508,0.163934945376675,0,0,0.390438744296638,0.430846795465598,0,0.222798674082394,0.283076530788832,0.404810701674894,0.584511715822624,1.58115111178609,12.2102100240287,0,0,0.162886959353576,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0,0,0.316036757935816,0,0,0,0,0.129358683782755,0,0.177340233642274,0,0.329098041204242,0.608929898229199,0,0,1.10264199027481,0.16488625294148,0,0.120625849856312,0,0,0,3.33765543618917,0,0,0.185194527369712,0,0,0,0,0,0,0.954670618015114,0,0.203319467126849,0,0.209088296014469,0.436725127492355,0,0.0826534557253359,0.523511883968059,0.129614973291793,0,0,0,0,0,0.258319646955462,0,0,0,0,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0.0962118416403295,0,0.453460767230423,0,0,0,0.19318959403219,0,0.183151624267265,0.214368379079066,0,1.6942555278512,2.76195141904306,2.29158205375759,2.06223818812425,4.7955776383945,0,4.05013500139084,3.60256962579376,3.62513927187364,3.62432218226274,0,0.399024873401031,0,0.243106717068294,0,0,0,0,0,0,0.25347929989024,0,0.280924522409647,0.512201219238954,0.229741875822453,0.476293691283074,0.463537303779422,0.38581844092741,0,0.294397840268795,0,0.532427418478012,0,0.290692833264657,0.0941093804153306,0.25384382367503,0.548783918618318,0.263069711437843,0,0,0.355905054372522,0.197008964751127,0,0,0.192906610981141,0.499621155875892,0.935726433781634,0.214871054048298,0.57386499620653,0.441182838239031,0.463735671240843|short_description=p3@Amigo1}} | ||
|EntrezGene=229715 | |||
|HGNC= | |||
|MCL_coexpression_id=251 | |||
|UniProt=Q80ZD8 | |||
|association_with_transcript=52bp_to_ENSMUST00000106656_5end | |||
|description=CAGE_peak_3_at_Amigo1_5end | |||
|id=chr3:107989328..107989342,+ | |||
|ontology_enrichment_celltype=CL:0000540!5.71e-13!33;CL:0000047!5.71e-13!33;CL:0000031!5.71e-13!33;CL:0000404!5.71e-13!33;CL:0000117!7.37e-11!23;CL:0000337!7.37e-11!23;CL:0000393!2.82e-09!39;CL:0000211!2.82e-09!39;CL:0000221!3.83e-09!44;CL:0000133!3.83e-09!44;CL:0002319!4.81e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.56e-17,23;CL:0000337,2.56e-17,23;CL:0000540,6.17e-13,33;CL:0000047,6.17e-13,33;CL:0000031,6.17e-13,33;CL:0000404,6.17e-13,33;CL:0000393,1.91e-10,39;CL:0000211,1.91e-10,39;CL:0002319,3.57e-09,43;CL:0000221,6.81e-09,44;CL:0000133,6.81e-09,44;CL:0002610,7.74e-09,3;CL:0002614,2.77e-08,3;CL:0000120,5.13e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.62e-22!73;UBERON:0005743!3.62e-22!73;UBERON:0000073!7.24e-22!75;UBERON:0001016!7.24e-22!75;UBERON:0004121!1.28e-20!102;UBERON:0000924!1.28e-20!102;UBERON:0006601!1.28e-20!102;UBERON:0000033!5.35e-18!63;UBERON:0002346!6.03e-18!71;UBERON:0003075!6.03e-18!71;UBERON:0007284!6.03e-18!71;UBERON:0001049!9.45e-17!52;UBERON:0005068!9.45e-17!52;UBERON:0006241!9.45e-17!52;UBERON:0007135!9.45e-17!52;UBERON:0000955!1.05e-16!50;UBERON:0006238!1.05e-16!50;UBERON:0002616!6.93e-16!49;UBERON:0002020!7.85e-14!34;UBERON:0003056!8.74e-13!49;UBERON:0003080!4.37e-12!40;UBERON:0002791!1.80e-11!29;UBERON:0003528!1.80e-11!29;UBERON:0001893!1.80e-11!29;UBERON:0002780!2.26e-11!39;UBERON:0001890!2.26e-11!39;UBERON:0006240!2.26e-11!39;UBERON:0007811!2.70e-09!86;UBERON:0000153!1.23e-08!94;UBERON:0000956!7.93e-08!21;UBERON:0001869!7.93e-08!21;UBERON:0000203!7.93e-08!21;UBERON:0002021!2.70e-07!10;UBERON:0000411!2.70e-07!10;UBERON:0001950!2.70e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.61e-35,73;UBERON:0001016,2.17e-34,75;UBERON:0000073,2.37e-33,54;UBERON:0001049,2.59e-29,52;UBERON:0005068,2.59e-29,52;UBERON:0006241,2.59e-29,52;UBERON:0007135,2.59e-29,52;UBERON:0000955,6.06e-26,47;UBERON:0006238,6.06e-26,47;UBERON:0004121,1.06e-25,95;UBERON:0000924,1.06e-25,95;UBERON:0006601,1.06e-25,95;UBERON:0002616,5.43e-24,46;UBERON:0002346,1.12e-22,64;UBERON:0003075,1.12e-22,64;UBERON:0007284,1.12e-22,64;UBERON:0002020,8.12e-22,34;UBERON:0002021,1.85e-19,10;UBERON:0000411,1.85e-19,10;UBERON:0001950,1.85e-19,10;UBERON:0010371,3.94e-19,73;UBERON:0003528,1.68e-18,29;UBERON:0002791,1.68e-18,29;UBERON:0001893,1.68e-18,29;UBERON:0003080,1.69e-18,40;UBERON:0002780,7.89e-17,39;UBERON:0001890,7.89e-17,39;UBERON:0006240,7.89e-17,39;UBERON:0003056,2.79e-14,49;UBERON:0010314,6.33e-14,92;UBERON:0002619,4.75e-13,17;UBERON:0000956,1.84e-12,21;UBERON:0001869,1.84e-12,21;UBERON:0000203,1.84e-12,21;UBERON:0003076,9.10e-12,12;UBERON:0003057,9.10e-12,12;UBERON:0002950,1.18e-10,4;UBERON:0001891,1.18e-10,4;UBERON:0009616,1.18e-10,4;UBERON:0010286,1.18e-10,4;UBERON:0000025,4.52e-10,114;UBERON:0004111,6.35e-10,122;UBERON:0011216,8.53e-10,194;UBERON:0004684,7.74e-09,3;UBERON:0002275,7.74e-09,3;UBERON:0002038,2.77e-08,3;UBERON:0009663,2.77e-08,3;UBERON:0009661,2.77e-08,3;UBERON:0000125,2.77e-08,3;UBERON:0002308,2.77e-08,3;UBERON:0002420,2.44e-07,8;UBERON:0007245,2.44e-07,8;UBERON:0010009,2.44e-07,8;UBERON:0010011,2.44e-07,8;UBERON:0000454,2.44e-07,8;UBERON:0004733,6.20e-07,6;UBERON:0004732,6.20e-07,6;UBERON:0002028,6.20e-07,6;UBERON:0007277,6.20e-07,6 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0.202475267389826,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.58328969722285,0,0,0,0,0.336093799142464,0,0,0,1.01158230429799,1.05798195854407,1.26766280701236,0,0,0,0,0,0,0,0.207379224616955,0.270011876663381,0.420649922702764,1.14260393761521,1.32521124570968,0.122490799214954,0,0,6.60695285996332,3.95830748064082,3.37934373163736,1.31886287730194,0.457438218012048,1.04182674111352,4.74611098302348,2.25105044012672,2.29197371665215,0.294628585473668,0.142371680799103,1.3047961207771,0,0.226714680320357,0,0,0,0,0,0,0.280888840263504,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0.29688427812965,0.173485326766136,0,0.461230994512117,0,0.117588707135705,0.125666591329675,0,0,0,0.808834249737046,0,0.484875253135222,0,2.04946557908083,2.93225389538837,0,0,0,0.127070227073065,3.89455662452539,0.915001205637253,0,3.47648640384553,4.34716277461562,4.36354893575076,2.92034273521964,0.101839363850316,0,0.252722758433675,0.210441855886474,0,0.459804208866946,0.180062129805349,0.150704817835715,0.136072998302656,0.2562274405697,0,0.517406741478031,0.215567992932842,0,0.351902248327898,0.219195732427575,0,0,0,0.199034266818493,0,0,0,0,0,0,0.23674473558521,0,0,0.232533944750408,0,0,0,0,0,0,0,0,1.05144974282064,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0.397912944082302,0,0,0.216138049874694,0,0.189667900953082,0.228497025219458,0,0,0.193952487167626,0.210407459670956,0.126473074248515,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0.195133647857799,0.157635144106191,0,0,0,0,0.144649058581512,0,0,0,0,4.0137647496948,2.93029216480508,0.163934945376675,0,0,0.390438744296638,0.430846795465598,0,0.222798674082394,0.283076530788832,0.404810701674894,0.584511715822624,1.58115111178609,12.2102100240287,0,0,0.162886959353576,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0,0,0.316036757935816,0,0,0,0,0.129358683782755,0,0.177340233642274,0,0.329098041204242,0.608929898229199,0,0,1.10264199027481,0.16488625294148,0,0.120625849856312,0,0,0,3.33765543618917,0,0,0.185194527369712,0,0,0,0,0,0,0.954670618015114,0,0.203319467126849,0,0.209088296014469,0.436725127492355,0,0.0826534557253359,0.523511883968059,0.129614973291793,0,0,0,0,0,0.258319646955462,0,0,0,0,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0.0962118416403295,0,0.453460767230423,0,0,0,0.19318959403219,0,0.183151624267265,0.214368379079066,0,1.6942555278512,2.76195141904306,2.29158205375759,2.06223818812425,4.7955776383945,0,4.05013500139084,3.60256962579376,3.62513927187364,3.62432218226274,0,0.399024873401031,0,0.243106717068294,0,0,0,0,0,0,0.25347929989024,0,0.280924522409647,0.512201219238954,0.229741875822453,0.476293691283074,0.463537303779422,0.38581844092741,0,0.294397840268795,0,0.532427418478012,0,0.290692833264657,0.0941093804153306,0.25384382367503,0.548783918618318,0.263069711437843,0,0,0.355905054372522,0.197008964751127,0,0,0.192906610981141,0.499621155875892,0.935726433781634,0.214871054048298,0.57386499620653,0.441182838239031,0.463735671240843 | |||
|short_description=p3@Amigo1 | |||
}} |
Revision as of 01:13, 14 September 2013
Short description: | p3@Amigo1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Amigo1_5end |
Coexpression cluster: | MCL_coexpression_mm9:251 |
Association with transcript: | 52bp_to_ENSMUST00000106656_5end |
EntrezGene: | Amigo1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.56e-17 | 23 |
neuroblast (sensu Vertebrata) | 2.56e-17 | 23 |
neuron | 6.17e-13 | 33 |
neuronal stem cell | 6.17e-13 | 33 |
neuroblast | 6.17e-13 | 33 |
electrically signaling cell | 6.17e-13 | 33 |
electrically responsive cell | 1.91e-10 | 39 |
electrically active cell | 1.91e-10 | 39 |
neural cell | 3.57e-09 | 43 |
ectodermal cell | 6.81e-09 | 44 |
neurectodermal cell | 6.81e-09 | 44 |
raphe nuclei neuron | 7.74e-09 | 3 |
neuron of the substantia nigra | 2.77e-08 | 3 |
granule cell | 5.13e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.