FFCP PHASE1:Hg19::chr7:156685844..156685884,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64327 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13243 | |||
|TSSclassifier=S | |||
|UniProt=F8WCL1,F2Z2Z3,F8WEK4,F8WEN8,F8WDW0,B7Z633 | |||
|association_with_transcript=0bp_to_ENST00000414218,ENST00000430278,ENST00000433968,ENST00000434278,ENST00000444719,ENST00000454132,ENST00000485985,ENST00000540390_5end | |||
|description=CAGE_peak_1_at_LMBR1_5end | |||
|id=chr7:156685844..156685884,- | |||
|ontology_enrichment_celltype=CL:0000791!1.99e-07!18;CL:0000789!1.99e-07!18;CL:0002420!1.99e-07!18;CL:0002419!1.99e-07!18;CL:0000790!1.99e-07!18;CL:0000542!3.32e-07!53;CL:0000051!3.32e-07!53;CL:0000838!8.19e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.07e-07;18!CL:0000789;2.07e-07;18!CL:0002419;2.07e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.99e-07,18;CL:0000789,1.99e-07,18;CL:0002420,1.99e-07,18;CL:0002419,1.99e-07,18;CL:0000790,1.99e-07,18;CL:0000037,2.63e-07,168;CL:0000542,3.32e-07,53;CL:0000051,3.32e-07,53;CL:0000838,8.19e-07,52 | |||
|ontology_enrichment_development_v019=CL:0000790;2.07e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002780;1.08e-09;41!UBERON:0001890;1.08e-09;41!UBERON:0001869;2.09e-09;32!UBERON:0003528;2.79e-09;34!UBERON:0002020;2.79e-09;34!UBERON:0001893;2.85e-09;34!UBERON:0002619;3.29e-09;22!UBERON:0002791;3.99e-09;32!UBERON:0001950;1.52e-08;20!UBERON:0000073;1.83e-08;53!UBERON:0002616;1.83e-08;53!UBERON:0000956;9.34e-08;25!UBERON:0000203;9.34e-08;25 | |||
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| |||
|short_description=p1@LMBR1 | |||
}} |
Revision as of 00:13, 14 September 2013
Short description: | p1@LMBR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LMBR1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000414218, ENST00000430278, ENST00000433968, ENST00000434278, ENST00000444719, ENST00000454132, ENST00000485985, ENST00000540390_5end |
EntrezGene: | LMBR1 |
HGNC: | 13243 |
UniProt: | F8WCL1F2Z2Z3F8WEK4F8WEN8F8WDW0B7Z633 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.99e-07 | 18 |
alpha-beta T cell | 1.99e-07 | 18 |
immature T cell | 1.99e-07 | 18 |
mature T cell | 1.99e-07 | 18 |
immature alpha-beta T cell | 1.99e-07 | 18 |
hematopoietic stem cell | 2.63e-07 | 168 |
lymphocyte | 3.32e-07 | 53 |
common lymphoid progenitor | 3.32e-07 | 53 |
lymphoid lineage restricted progenitor cell | 8.19e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.90e-16 | 114 |
neural tube | 1.46e-14 | 56 |
neural rod | 1.46e-14 | 56 |
future spinal cord | 1.46e-14 | 56 |
neural keel | 1.46e-14 | 56 |
regional part of nervous system | 4.54e-14 | 53 |
regional part of brain | 4.54e-14 | 53 |
regional part of forebrain | 4.90e-13 | 41 |
forebrain | 4.90e-13 | 41 |
anterior neural tube | 4.90e-13 | 41 |
future forebrain | 4.90e-13 | 41 |
central nervous system | 1.50e-12 | 81 |
brain | 3.67e-12 | 68 |
future brain | 3.67e-12 | 68 |
nervous system | 7.74e-12 | 89 |
brain grey matter | 1.05e-10 | 34 |
gray matter | 1.05e-10 | 34 |
telencephalon | 1.13e-10 | 34 |
cerebral hemisphere | 2.19e-10 | 32 |
regional part of telencephalon | 5.78e-10 | 32 |
regional part of cerebral cortex | 3.20e-09 | 22 |
neocortex | 1.51e-08 | 20 |
neural plate | 3.21e-08 | 82 |
presumptive neural plate | 3.21e-08 | 82 |
cerebral cortex | 8.74e-08 | 25 |
pallium | 8.74e-08 | 25 |
neurectoderm | 1.12e-07 | 86 |
pre-chordal neural plate | 7.93e-07 | 61 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.