FFCP PHASE1:Mm9::chr2:26171033..26171122,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67839|HGNC=|MCL_coexpression_id=22|UniProt=Q6IR34,E9Q2Y2|association_with_transcript=0bp_to_ENSMUST00000066914,ENSMUST00000066936,ENSMUST00000078616,ENSMUST00000114135,NM_001199146,NM_153410,uc008iun.2,uc008iuo.2_5end|description=CAGE_peak_1_at_Gpsm1_5end|id=chr2:26171033..26171122,+|ontology_enrichment_celltype=CL:0000540!2.46e-15!33;CL:0000047!2.46e-15!33;CL:0000031!2.46e-15!33;CL:0000404!2.46e-15!33;CL:0000221!1.25e-13!44;CL:0000133!1.25e-13!44;CL:0002319!2.54e-13!43;CL:0000393!9.05e-13!39;CL:0000211!9.05e-13!39;CL:0000117!1.39e-12!23;CL:0000337!1.39e-12!23;CL:0000055!5.43e-11!50|ontology_enrichment_celltype_v019_2=CL:0000540,2.44e-15,33;CL:0000047,2.44e-15,33;CL:0000031,2.44e-15,33;CL:0000404,2.44e-15,33;CL:0000221,1.24e-13,44;CL:0000133,1.24e-13,44;CL:0002319,2.53e-13,43;CL:0000393,9.00e-13,39;CL:0000211,9.00e-13,39;CL:0000117,1.38e-12,23;CL:0000337,1.38e-12,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.63e-20!73;UBERON:0005743!1.63e-20!73;UBERON:0004121!1.18e-19!102;UBERON:0000924!1.18e-19!102;UBERON:0006601!1.18e-19!102;UBERON:0000073!1.94e-19!75;UBERON:0001016!1.94e-19!75;UBERON:0002346!1.36e-15!71;UBERON:0003075!1.36e-15!71;UBERON:0007284!1.36e-15!71;UBERON:0001049!8.06e-15!52;UBERON:0005068!8.06e-15!52;UBERON:0006241!8.06e-15!52;UBERON:0007135!8.06e-15!52;UBERON:0000033!1.56e-14!63;UBERON:0003056!2.91e-12!49;UBERON:0000955!7.63e-12!50;UBERON:0006238!7.63e-12!50;UBERON:0002616!9.45e-12!49;UBERON:0000153!5.66e-11!94;UBERON:0002020!5.36e-10!34;UBERON:0003080!6.70e-10!40;UBERON:0002780!1.76e-09!39;UBERON:0001890!1.76e-09!39;UBERON:0006240!1.76e-09!39;UBERON:0007811!2.99e-09!86;UBERON:0002791!3.16e-07!29;UBERON:0003528!3.16e-07!29;UBERON:0001893!3.16e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.37e-21,95;UBERON:0000924,3.37e-21,95;UBERON:0006601,3.37e-21,95;UBERON:0001017,1.61e-20,73;UBERON:0001016,1.92e-19,75;UBERON:0010371,1.44e-17,73;UBERON:0002346,1.74e-17,64;UBERON:0003075,1.74e-17,64;UBERON:0007284,1.74e-17,64;UBERON:0001049,8.01e-15,52;UBERON:0005068,8.01e-15,52;UBERON:0006241,8.01e-15,52;UBERON:0007135,8.01e-15,52;UBERON:0000073,1.07e-14,54;UBERON:0010314,7.92e-14,92;UBERON:0003056,2.89e-12,49;UBERON:0000955,8.82e-12,47;UBERON:0006238,8.82e-12,47;UBERON:0002616,1.08e-11,46;UBERON:0002020,5.33e-10,34;UBERON:0003080,6.67e-10,40;UBERON:0002780,1.75e-09,39;UBERON:0001890,1.75e-09,39;UBERON:0006240,1.75e-09,39;UBERON:0003528,3.15e-07,29;UBERON:0002791,3.15e-07,29;UBERON:0001893,3.15e-07,29|phase1_expression=24.0223270657191,0.348975407639361,0.454999239389536,0,0,3.69334398206158,3.03696432774183,6.32704284863724,24.2156602100867,24.1086462111653,3.25314139628459,5.82336760665956,3.59521532855532,4.19617931611188,0.666219523631325,0.607425802169478,1.39912375625629,5.0473946457318,6.17014951225825,11.0341309467488,9.09963204616447,12.3120779489098,10.7091913546964,1.75991665072747,1.14704640533585,2.29692785646008,0.430761996159075,1.29282739611533,0.570070258369122,0.252030129759931,2.21730510655305,2.54012269383853,3.07532393792285,0,0.866554859253824,0.997407872150954,2.04169356262369,2.09265815368454,0,1.0470474879476,3.52938892818609,2.73218193983378,3.88408282424923,6.54663453473002,9.12392380975631,11.0128051297009,21.9069576417451,13.0815093828268,10.9843091367236,9.52706505463989,12.8787507895334,11.5002051491977,12.080347636157,10.1550699881588,11.0910953717013,9.00408026125814,10.8882707176728,9.7977697532714,70.2038119182804,82.5225927664371,82.3980824558033,8.4711133017283,16.8966011261116,4.94944844504769,2.96659908770092,6.3943210345149,18.8748069626595,18.0582603501131,27.8925057109805,34.021496459586,33.2313438935184,44.2759025825896,47.9284733865001,41.6468717330844,43.3221529002428,43.203282970671,15.4162233399144,16.2162919368188,15.0534402591119,72.5374582516066,71.6348249406868,59.9050376140274,22.8930059181132,22.5105044012672,18.7941844765476,45.0781735774712,41.5725307933381,52.0054453852589,5.2251073399897,6.42358260907677,6.66688324013859,5.16254326188832,2.719885334831,0,0,0.448026887097336,3.5111105032938,6.81721290312231,11.4305842025262,8.48014978824817,19.858922188512,16.6824420638613,15.2883143823987,0,4.97929394325792,7.85415582972806,4.04419556011827,2.62622923353838,2.33044095282455,8.46120192669501,15.6136794089522,11.8741536541735,8.07154240396205,8.28974523039424,11.0533384707563,4.77533047052767,7.66304399976559,3.18118585223806,4.42305275974937,13.9119490954772,7.06692859073259,9.21262980956922,0,28.6925181071316,35.8153868651008,1.78819938646014,14.7372603142282,9.59844369589452,8.13249453267614,23.5171303865572,15.5550204958333,56.1674953944504,11.1247564923057,17.1329356411321,18.90871205492,17.5220564113178,17.2108524907035,7.71323217782577,3.28539585963777,3.57751155007006,26.4144499214289,22.9902104433473,24.4884496535275,24.5648853072216,33.8821765773613,25.8789714975397,36.2625674046151,9.05461797586555,20.9100953144857,26.2857451433269,22.1698416446576,21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| ||
|EntrezGene=67839 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q6IR34,E9Q2Y2 | |||
|association_with_transcript=0bp_to_ENSMUST00000066914,ENSMUST00000066936,ENSMUST00000078616,ENSMUST00000114135,NM_001199146,NM_153410,uc008iun.2,uc008iuo.2_5end | |||
|description=CAGE_peak_1_at_Gpsm1_5end | |||
|id=chr2:26171033..26171122,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.46e-15!33;CL:0000047!2.46e-15!33;CL:0000031!2.46e-15!33;CL:0000404!2.46e-15!33;CL:0000221!1.25e-13!44;CL:0000133!1.25e-13!44;CL:0002319!2.54e-13!43;CL:0000393!9.05e-13!39;CL:0000211!9.05e-13!39;CL:0000117!1.39e-12!23;CL:0000337!1.39e-12!23;CL:0000055!5.43e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.44e-15,33;CL:0000047,2.44e-15,33;CL:0000031,2.44e-15,33;CL:0000404,2.44e-15,33;CL:0000221,1.24e-13,44;CL:0000133,1.24e-13,44;CL:0002319,2.53e-13,43;CL:0000393,9.00e-13,39;CL:0000211,9.00e-13,39;CL:0000117,1.38e-12,23;CL:0000337,1.38e-12,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.63e-20!73;UBERON:0005743!1.63e-20!73;UBERON:0004121!1.18e-19!102;UBERON:0000924!1.18e-19!102;UBERON:0006601!1.18e-19!102;UBERON:0000073!1.94e-19!75;UBERON:0001016!1.94e-19!75;UBERON:0002346!1.36e-15!71;UBERON:0003075!1.36e-15!71;UBERON:0007284!1.36e-15!71;UBERON:0001049!8.06e-15!52;UBERON:0005068!8.06e-15!52;UBERON:0006241!8.06e-15!52;UBERON:0007135!8.06e-15!52;UBERON:0000033!1.56e-14!63;UBERON:0003056!2.91e-12!49;UBERON:0000955!7.63e-12!50;UBERON:0006238!7.63e-12!50;UBERON:0002616!9.45e-12!49;UBERON:0000153!5.66e-11!94;UBERON:0002020!5.36e-10!34;UBERON:0003080!6.70e-10!40;UBERON:0002780!1.76e-09!39;UBERON:0001890!1.76e-09!39;UBERON:0006240!1.76e-09!39;UBERON:0007811!2.99e-09!86;UBERON:0002791!3.16e-07!29;UBERON:0003528!3.16e-07!29;UBERON:0001893!3.16e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.37e-21,95;UBERON:0000924,3.37e-21,95;UBERON:0006601,3.37e-21,95;UBERON:0001017,1.61e-20,73;UBERON:0001016,1.92e-19,75;UBERON:0010371,1.44e-17,73;UBERON:0002346,1.74e-17,64;UBERON:0003075,1.74e-17,64;UBERON:0007284,1.74e-17,64;UBERON:0001049,8.01e-15,52;UBERON:0005068,8.01e-15,52;UBERON:0006241,8.01e-15,52;UBERON:0007135,8.01e-15,52;UBERON:0000073,1.07e-14,54;UBERON:0010314,7.92e-14,92;UBERON:0003056,2.89e-12,49;UBERON:0000955,8.82e-12,47;UBERON:0006238,8.82e-12,47;UBERON:0002616,1.08e-11,46;UBERON:0002020,5.33e-10,34;UBERON:0003080,6.67e-10,40;UBERON:0002780,1.75e-09,39;UBERON:0001890,1.75e-09,39;UBERON:0006240,1.75e-09,39;UBERON:0003528,3.15e-07,29;UBERON:0002791,3.15e-07,29;UBERON:0001893,3.15e-07,29 | |||
|phase1_expression=24.0223270657191,0.348975407639361,0.454999239389536,0,0,3.69334398206158,3.03696432774183,6.32704284863724,24.2156602100867,24.1086462111653,3.25314139628459,5.82336760665956,3.59521532855532,4.19617931611188,0.666219523631325,0.607425802169478,1.39912375625629,5.0473946457318,6.17014951225825,11.0341309467488,9.09963204616447,12.3120779489098,10.7091913546964,1.75991665072747,1.14704640533585,2.29692785646008,0.430761996159075,1.29282739611533,0.570070258369122,0.252030129759931,2.21730510655305,2.54012269383853,3.07532393792285,0,0.866554859253824,0.997407872150954,2.04169356262369,2.09265815368454,0,1.0470474879476,3.52938892818609,2.73218193983378,3.88408282424923,6.54663453473002,9.12392380975631,11.0128051297009,21.9069576417451,13.0815093828268,10.9843091367236,9.52706505463989,12.8787507895334,11.5002051491977,12.080347636157,10.1550699881588,11.0910953717013,9.00408026125814,10.8882707176728,9.7977697532714,70.2038119182804,82.5225927664371,82.3980824558033,8.4711133017283,16.8966011261116,4.94944844504769,2.96659908770092,6.3943210345149,18.8748069626595,18.0582603501131,27.8925057109805,34.021496459586,33.2313438935184,44.2759025825896,47.9284733865001,41.6468717330844,43.3221529002428,43.203282970671,15.4162233399144,16.2162919368188,15.0534402591119,72.5374582516066,71.6348249406868,59.9050376140274,22.8930059181132,22.5105044012672,18.7941844765476,45.0781735774712,41.5725307933381,52.0054453852589,5.2251073399897,6.42358260907677,6.66688324013859,5.16254326188832,2.719885334831,0,0,0.448026887097336,3.5111105032938,6.81721290312231,11.4305842025262,8.48014978824817,19.858922188512,16.6824420638613,15.2883143823987,0,4.97929394325792,7.85415582972806,4.04419556011827,2.62622923353838,2.33044095282455,8.46120192669501,15.6136794089522,11.8741536541735,8.07154240396205,8.28974523039424,11.0533384707563,4.77533047052767,7.66304399976559,3.18118585223806,4.42305275974937,13.9119490954772,7.06692859073259,9.21262980956922,0,28.6925181071316,35.8153868651008,1.78819938646014,14.7372603142282,9.59844369589452,8.13249453267614,23.5171303865572,15.5550204958333,56.1674953944504,11.1247564923057,17.1329356411321,18.90871205492,17.5220564113178,17.2108524907035,7.71323217782577,3.28539585963777,3.57751155007006,26.4144499214289,22.9902104433473,24.4884496535275,24.5648853072216,33.8821765773613,25.8789714975397,36.2625674046151,9.05461797586555,20.9100953144857,26.2857451433269,22.1698416446576,21.0427903130472,21.409638190371,18.1091126591527,20.9897779136102,18.5101868141199,4.91549231119264,4.88961023517959,4.54661599032948,18.8484453007307,16.8858763186389,18.1862682075625,14.4414288706978,15.1508458445501,11.415766353666,12.0917651270212,10.7309360559848,10.0418194435766,11.6837493438571,5.25335885053105,5.02626619184305,6.28659945928929,5.48875288227627,6.03928884421673,14.0894265537965,45.2780294468851,1.65209391491899,1.58670339998127,26.447743066369,19.043407092556,9.79392706047909,10.6892268050372,8.45036566610507,6.27744566171445,1.89811624617805,4.6115707322723,7.79139147280835,5.17286827306992,6.43381487493096,5.39291645192533,2.16138049874694,1.1948476395262,12.8974172648096,13.1385789501188,6.76246414038483,9.57161240872977,13.3827216145662,13.8167565183928,9.86489979138414,5.60918562322488,3.29697328466887,4.81248939295022,0.889357881261447,5.33904338291501,3.14494392181125,1.79889689907883,1.01430060694251,2.65294875727659,3.31013607315846,3.16465751195892,2.2698931748505,2.47105271869273,0,2.60498663367952,2.80833905803104,2.77836765741823,0.179397413521912,0.964887042726734,7.944387177164,26.5287976478679,20.3706220552532,19.1811946925963,18.7752198630802,19.4307258632506,14.7587057349329,26.5381761086606,23.4876364718225,22.8108630338238,26.3100368284854,12.2897486036803,11.7425787668809,11.8612228036839,4.52373851817817,0.54390568381871,1.96705709207614,1.37968373152366,17.8211154886449,20.6292568402278,7.04920265119704,4.54447668967871,14.5133780931478,10.5418460960092,20.8960695800815,22.4630670075399,25.8446461935577,26.3261173633614,22.2645885921192,23.380468632905,20.9502522311657,16.708708453934,18.4522110770749,17.2723635557238,17.7546785695398,10.8880281161873,0,8.98288353773431,8.76738315197778,2.45186603682668,7.97315110778086,7.99331384654211,8.26970538138308,7.27067458955011,3.56497378384721,2.52829406348653,0,5.15677716240934,8.5109901438447,28.6297139509783,25.3543020214199,21.8623775732224,20.3941268688615,22.652839835463,18.4294903074375,16.1366423030738,1.87737366450968,8.26145076368899,3.30792597082443,15.1695352706162,19.8601244835964,13.2085305592661,19.3383197285081,22.4873032650734,2.91480836629851,17.9862542950194,2.05045056957423,13.8279201535359,8.14855920426731,3.57900068308913,2.46049609897845,2.51655990527175,15.4680371294408,15.3946597556024,18.1041965683795,3.81868247206045,22.1435195506795,17.0788352386553,10.6925287413583,11.9180328728247,14.4119292072477,14.4304850631758,12.3980183588004,7.0674104335688,2.33306951925227,4.970714504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| |||
|short_description=p1@Gpsm1 | |||
}} |
Revision as of 23:30, 13 September 2013
Short description: | p1@Gpsm1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gpsm1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000066914, ENSMUST00000066936, ENSMUST00000078616, ENSMUST00000114135, NM_001199146, NM_153410, uc008iun.2, uc008iuo.2_5end |
EntrezGene: | Gpsm1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.44e-15 | 33 |
neuronal stem cell | 2.44e-15 | 33 |
neuroblast | 2.44e-15 | 33 |
electrically signaling cell | 2.44e-15 | 33 |
ectodermal cell | 1.24e-13 | 44 |
neurectodermal cell | 1.24e-13 | 44 |
neural cell | 2.53e-13 | 43 |
electrically responsive cell | 9.00e-13 | 39 |
electrically active cell | 9.00e-13 | 39 |
CNS neuron (sensu Vertebrata) | 1.38e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.38e-12 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.37e-21 | 95 |
ectoderm | 3.37e-21 | 95 |
presumptive ectoderm | 3.37e-21 | 95 |
central nervous system | 1.61e-20 | 73 |
nervous system | 1.92e-19 | 75 |
ecto-epithelium | 1.44e-17 | 73 |
neurectoderm | 1.74e-17 | 64 |
neural plate | 1.74e-17 | 64 |
presumptive neural plate | 1.74e-17 | 64 |
neural tube | 8.01e-15 | 52 |
neural rod | 8.01e-15 | 52 |
future spinal cord | 8.01e-15 | 52 |
neural keel | 8.01e-15 | 52 |
regional part of nervous system | 1.07e-14 | 54 |
structure with developmental contribution from neural crest | 7.92e-14 | 92 |
pre-chordal neural plate | 2.89e-12 | 49 |
brain | 8.82e-12 | 47 |
future brain | 8.82e-12 | 47 |
regional part of brain | 1.08e-11 | 46 |
gray matter | 5.33e-10 | 34 |
anterior neural tube | 6.67e-10 | 40 |
regional part of forebrain | 1.75e-09 | 39 |
forebrain | 1.75e-09 | 39 |
future forebrain | 1.75e-09 | 39 |
brain grey matter | 3.15e-07 | 29 |
regional part of telencephalon | 3.15e-07 | 29 |
telencephalon | 3.15e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.