FFCP PHASE1:Mm9::chr2:20890570..20890584,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71435|HGNC=|UniProt=Q6DFV3|association_with_transcript=-62bp_to_ENSMUST00000114594_5end|description=CAGE_peak_1_at_Arhgap21_5end|id=chr2:20890570..20890584,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000025!1.02e-07!114;UBERON:0002619!1.90e-07!17;UBERON:0002021!2.20e-07!10;UBERON:0000411!2.20e-07!10;UBERON:0001950!2.20e-07!10;UBERON:0002791!2.57e-07!29;UBERON:0003528!2.57e-07!29;UBERON:0001893!2.57e-07!29;UBERON:0004121!2.95e-07!102;UBERON:0000924!2.95e-07!102;UBERON:0006601!2.95e-07!102;UBERON:0004111!3.05e-07!122;UBERON:0000955!4.30e-07!50;UBERON:0006238!4.30e-07!50;UBERON:0000956!5.10e-07!21;UBERON:0001869!5.10e-07!21;UBERON:0000203!5.10e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0010314,5.36e-08,92;UBERON:0004121,7.40e-08,95;UBERON:0000924,7.40e-08,95;UBERON:0006601,7.40e-08,95;UBERON:0010371,7.90e-08,73;UBERON:0000025,1.02e-07,114;UBERON:0002619,1.90e-07,17;UBERON:0002021,2.20e-07,10;UBERON:0000411,2.20e-07,10;UBERON:0001950,2.20e-07,10;UBERON:0003528,2.57e-07,29;UBERON:0002791,2.57e-07,29;UBERON:0001893,2.57e-07,29;UBERON:0004111,3.04e-07,122;UBERON:0000956,5.10e-07,21;UBERON:0001869,5.10e-07,21;UBERON:0000203,5.10e-07,21|phase1_expression=6.08565618998217,11.5161884520989,10.0099832665698,16.3330674105688,16.5295590882295,11.9194283057442,10.0453435456076,0.516493293766305,1.83025338797167,2.57470978954193,1.02730780935303,0.717949430958028,0,0,3.99731714178795,3.64455481301687,2.09868563438444,0,2.33094537129756,1.27316895539409,9.69493507722195,1.58865521921416,1.82839852397255,5.75972722056264,5.73523202667925,10.9104073181854,6.8921919385452,7.75696437669201,8.17100703662408,11.089325709437,6.43018480900384,6.35030673459631,6.76571266343027,0,13.5760261283099,6.4831511689812,11.4334839506927,0.837063261473815,3.1253413780952,1.0470474879476,1.76469446409304,0.683045484958446,1.45653105909346,7.05022180663233,8.81979301609777,8.81024410376071,7.04152209913235,7.41285531693518,6.15121311656521,12.2490836416799,4.4795654920116,5.75010257459886,1.00669563634642,0.725362142011344,0,11.3194151855817,14.0401385569991,12.8918023069361,9.91350658212029,10.0508286061686,8.23980824558033,3.38844532069132,1.77858959222228,4.49949858640699,6.92206453796882,4.2628806896766,5.09320187881288,8.83702102239575,9.95420278161385,7.2903206699113,7.78202357000113,6.85562362569129,10.3808214247258,10.4117179332711,9.96792898589658,12.8690630125403,7.70811166995721,14.939418555967,14.1318010595744,8.96826756565318,9.60620257825301,7.8137005583514,9.21303896704557,10.6924895906019,12.5294563176984,10.9012576625257,9.39653093274079,7.64237727883732,3.18050011999373,5.89458168832927,10.1452571045587,3.44169550792555,13.599426674155,3.77792234146472,3.89865850468601,9.40856462904405,5.61777680527007,18.7473354835864,9.35229616570328,13.7802434059033,4.08445917352373,23.0987659345772,22.9324715735981,71.1066703153331,3.46385665617943,2.78695852022608,5.05524445014783,6.62266502370548,3.88406825470758,8.60964406575984,6.7659277438793,6.08930956624282,6.91846491768175,8.74191315205211,14.9337658062345,7.53999547978053,10.6293836125781,17.3519228303894,3.5384422077995,16.3384518446883,7.28777010919299,7.75800405016355,22.3670113461747,31.9131068742586,30.1603257811375,7.40825460104915,6.35020159881377,2.99951365496704,4.06624726633807,16.3271796951257,21.0450277296568,15.2041766056566,28.6810128317256,29.1515621356577,16.2074674756457,16.3863675698435,14.4611896667449,8.33526703087623,8.59257378674494,10.5220927943237,3.12289063110489,6.66716102857071,7.20248519221397,10.8507468841715,21.8397162275762,15.6298738747517,18.1781345645874,6.98499100995342,3.88022387279116,7.18603104637713,7.03804496655795,5.2606975782618,6.67313398141435,14.626590993931,14.404749548556,6.76716507182877,4.21327912387941,3.3455227924913,4.54661599032948,8.69928244649108,6.0976775595085,6.66229627405755,6.8655973319711,11.8058539048442,9.41029388613007,12.3242990717716,15.2915838797783,21.6015883379264,16.1268652915211,19.8642631535705,20.0239959578264,15.3509986796599,12.7339066868809,19.5941371390143,37.4316108444146,18.4199256158919,8.59088835757875,13.4869788998408,5.33220626338085,4.87697010906921,10.0516619831233,9.4791256572971,6.89371935919098,6.46767128782701,9.96511029243474,8.07024878147653,10.8074139784116,8.15721535368718,8.38345574612217,8.08937467788799,7.5648317456143,11.948476395262,3.22435431620239,6.16941968092536,13.5249282807697,4.68398054044223,5.81857461502877,8.62670584650918,6.13394410105296,3.98547399544926,4.70996183524124,3.08492909804501,6.52195779591728,7.50802975722423,6.2898878436225,5.17182858485164,7.91154473415161,8.20002343158217,6.87489799809833,7.76779571117189,8.43103179230184,9.60964946158285,4.31304619582064,9.30352369171258,10.2972432127805,7.07220858251913,5.74071723270119,7.71909634181387,16.4430339248278,6.63219941196697,8.8001087278694,7.80827394565865,9.856990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| ||
|EntrezGene=71435 | |||
|HGNC= | |||
|UniProt=Q6DFV3 | |||
|association_with_transcript=-62bp_to_ENSMUST00000114594_5end | |||
|description=CAGE_peak_1_at_Arhgap21_5end | |||
|id=chr2:20890570..20890584,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!1.02e-07!114;UBERON:0002619!1.90e-07!17;UBERON:0002021!2.20e-07!10;UBERON:0000411!2.20e-07!10;UBERON:0001950!2.20e-07!10;UBERON:0002791!2.57e-07!29;UBERON:0003528!2.57e-07!29;UBERON:0001893!2.57e-07!29;UBERON:0004121!2.95e-07!102;UBERON:0000924!2.95e-07!102;UBERON:0006601!2.95e-07!102;UBERON:0004111!3.05e-07!122;UBERON:0000955!4.30e-07!50;UBERON:0006238!4.30e-07!50;UBERON:0000956!5.10e-07!21;UBERON:0001869!5.10e-07!21;UBERON:0000203!5.10e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,5.36e-08,92;UBERON:0004121,7.40e-08,95;UBERON:0000924,7.40e-08,95;UBERON:0006601,7.40e-08,95;UBERON:0010371,7.90e-08,73;UBERON:0000025,1.02e-07,114;UBERON:0002619,1.90e-07,17;UBERON:0002021,2.20e-07,10;UBERON:0000411,2.20e-07,10;UBERON:0001950,2.20e-07,10;UBERON:0003528,2.57e-07,29;UBERON:0002791,2.57e-07,29;UBERON:0001893,2.57e-07,29;UBERON:0004111,3.04e-07,122;UBERON:0000956,5.10e-07,21;UBERON:0001869,5.10e-07,21;UBERON:0000203,5.10e-07,21 | |||
|phase1_expression=6.08565618998217,11.5161884520989,10.0099832665698,16.3330674105688,16.5295590882295,11.9194283057442,10.0453435456076,0.516493293766305,1.83025338797167,2.57470978954193,1.02730780935303,0.717949430958028,0,0,3.99731714178795,3.64455481301687,2.09868563438444,0,2.33094537129756,1.27316895539409,9.69493507722195,1.58865521921416,1.82839852397255,5.75972722056264,5.73523202667925,10.9104073181854,6.8921919385452,7.75696437669201,8.17100703662408,11.089325709437,6.43018480900384,6.35030673459631,6.76571266343027,0,13.5760261283099,6.4831511689812,11.4334839506927,0.837063261473815,3.1253413780952,1.0470474879476,1.76469446409304,0.683045484958446,1.45653105909346,7.05022180663233,8.81979301609777,8.81024410376071,7.04152209913235,7.41285531693518,6.15121311656521,12.2490836416799,4.4795654920116,5.75010257459886,1.00669563634642,0.725362142011344,0,11.3194151855817,14.0401385569991,12.8918023069361,9.91350658212029,10.0508286061686,8.23980824558033,3.38844532069132,1.77858959222228,4.49949858640699,6.92206453796882,4.2628806896766,5.09320187881288,8.83702102239575,9.95420278161385,7.2903206699113,7.78202357000113,6.85562362569129,10.3808214247258,10.4117179332711,9.96792898589658,12.8690630125403,7.70811166995721,14.939418555967,14.1318010595744,8.96826756565318,9.60620257825301,7.8137005583514,9.21303896704557,10.6924895906019,12.5294563176984,10.9012576625257,9.39653093274079,7.64237727883732,3.18050011999373,5.89458168832927,10.1452571045587,3.44169550792555,13.599426674155,3.77792234146472,3.89865850468601,9.40856462904405,5.61777680527007,18.7473354835864,9.35229616570328,13.7802434059033,4.08445917352373,23.0987659345772,22.9324715735981,71.1066703153331,3.46385665617943,2.78695852022608,5.05524445014783,6.62266502370548,3.88406825470758,8.60964406575984,6.7659277438793,6.08930956624282,6.91846491768175,8.74191315205211,14.9337658062345,7.53999547978053,10.6293836125781,17.3519228303894,3.5384422077995,16.3384518446883,7.28777010919299,7.75800405016355,22.3670113461747,31.9131068742586,30.1603257811375,7.40825460104915,6.35020159881377,2.99951365496704,4.06624726633807,16.3271796951257,21.0450277296568,15.2041766056566,28.6810128317256,29.1515621356577,16.2074674756457,16.3863675698435,14.4611896667449,8.33526703087623,8.59257378674494,10.5220927943237,3.12289063110489,6.66716102857071,7.20248519221397,10.8507468841715,21.8397162275762,15.6298738747517,18.1781345645874,6.98499100995342,3.88022387279116,7.18603104637713,7.03804496655795,5.2606975782618,6.67313398141435,14.626590993931,14.404749548556,6.76716507182877,4.21327912387941,3.3455227924913,4.54661599032948,8.69928244649108,6.0976775595085,6.66229627405755,6.8655973319711,11.8058539048442,9.41029388613007,12.3242990717716,15.2915838797783,21.6015883379264,16.1268652915211,19.8642631535705,20.0239959578264,15.3509986796599,12.7339066868809,19.5941371390143,37.4316108444146,18.4199256158919,8.59088835757875,13.4869788998408,5.33220626338085,4.87697010906921,10.0516619831233,9.4791256572971,6.89371935919098,6.46767128782701,9.96511029243474,8.07024878147653,10.8074139784116,8.15721535368718,8.38345574612217,8.08937467788799,7.5648317456143,11.948476395262,3.22435431620239,6.16941968092536,13.5249282807697,4.68398054044223,5.81857461502877,8.62670584650918,6.13394410105296,3.98547399544926,4.70996183524124,3.08492909804501,6.52195779591728,7.50802975722423,6.2898878436225,5.17182858485164,7.91154473415161,8.20002343158217,6.87489799809833,7.76779571117189,8.43103179230184,9.60964946158285,4.31304619582064,9.30352369171258,10.2972432127805,7.07220858251913,5.74071723270119,7.71909634181387,16.4430339248278,6.63219941196697,8.8001087278694,7.80827394565865,9.85699042811709,10.5528942188344,10.4739201989846,12.4885534628991,11.8226358079643,12.8449519996289,14.1914744105164,18.5165545628784,16.4050732772601,16.6346417368738,0,1.63171705145613,10.3270497333998,12.6930903300177,12.5229460190478,14.417037450841,6.88526770582037,9.3414243065618,13.8823616543153,10.9322848403059,10.7711698866399,6.93009514062401,9.35754431146055,10.190755108398,12.5491317519217,16.9508397588561,13.0444966722353,20.5645642509957,12.2068473279111,6.23229612835393,13.3567306669932,10.8880281161873,10.619611067197,3.8844901784797,5.44182402536552,6.60117779145643,9.15435867930396,18.7535440245796,12.4045580720746,14.9048829085777,17.4683715408513,8.84902922220285,9.48767477174989,13.4076206222643,10.5536277783674,4.14140516272013,3.88076051348264,4.50107773566344,4.07882537377229,6.95638388648075,6.74650984468696,7.91608867697958,8.44818149029357,13.1335883935569,11.9085334949679,15.1695352706162,18.0840157899414,17.792312853806,14.5634259683826,15.2651036762907,10.4933101186746,15.9465759729038,4.10090113914846,6.60437977482312,5.00025223898222,6.40452753815949,4.10082683163076,4.80434163733698,9.5187920796559,7.69732987780119,7.32459861163446,5.72802370809068,4.9032079005076,7.1161813494397,7.66837919834789,5.64538399239065,7.86105229486239,10.6542833644008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| |||
|short_description=p1@Arhgap21 | |||
}} |
Revision as of 23:20, 13 September 2013
Short description: | p1@Arhgap21 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Arhgap21_5end |
Coexpression cluster: | NA |
Association with transcript: | -62bp_to_ENSMUST00000114594_5end |
EntrezGene: | Arhgap21 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 5.36e-08 | 92 |
ectoderm-derived structure | 7.40e-08 | 95 |
ectoderm | 7.40e-08 | 95 |
presumptive ectoderm | 7.40e-08 | 95 |
ecto-epithelium | 7.90e-08 | 73 |
tube | 1.02e-07 | 114 |
regional part of cerebral cortex | 1.90e-07 | 17 |
occipital lobe | 2.20e-07 | 10 |
visual cortex | 2.20e-07 | 10 |
neocortex | 2.20e-07 | 10 |
brain grey matter | 2.57e-07 | 29 |
regional part of telencephalon | 2.57e-07 | 29 |
telencephalon | 2.57e-07 | 29 |
anatomical conduit | 3.04e-07 | 122 |
cerebral cortex | 5.10e-07 | 21 |
cerebral hemisphere | 5.10e-07 | 21 |
pallium | 5.10e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.