FFCP PHASE1:Mm9::chr2:180444827..180444906,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=76425|HGNC=|UniProt=Q9D7M1|association_with_transcript=5bp_to_ENSMUST00000029090_5end|description=CAGE_peak_1_at_2310003C23Rik_5end|id=chr2:180444827..180444906,+|ontology_enrichment_celltype=CL:0000540!4.12e-16!33;CL:0000047!4.12e-16!33;CL:0000031!4.12e-16!33;CL:0000404!4.12e-16!33;CL:0000221!4.60e-15!44;CL:0000133!4.60e-15!44;CL:0002319!1.34e-14!43;CL:0000117!4.55e-14!23;CL:0000337!4.55e-14!23;CL:0000393!1.01e-11!39;CL:0000211!1.01e-11!39;CL:0000055!2.15e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.12e-16,33;CL:0000047,4.12e-16,33;CL:0000031,4.12e-16,33;CL:0000404,4.12e-16,33;CL:0000221,4.60e-15,44;CL:0000133,4.60e-15,44;CL:0002319,1.34e-14,43;CL:0000117,4.55e-14,23;CL:0000337,4.55e-14,23;CL:0000393,1.01e-11,39;CL:0000211,1.01e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.02e-23!73;UBERON:0005743!2.02e-23!73;UBERON:0000073!1.42e-22!75;UBERON:0001016!1.42e-22!75;UBERON:0004121!6.94e-21!102;UBERON:0000924!6.94e-21!102;UBERON:0006601!6.94e-21!102;UBERON:0000033!2.36e-17!63;UBERON:0001049!4.64e-16!52;UBERON:0005068!4.64e-16!52;UBERON:0006241!4.64e-16!52;UBERON:0007135!4.64e-16!52;UBERON:0002020!5.33e-16!34;UBERON:0002346!1.07e-15!71;UBERON:0003075!1.07e-15!71;UBERON:0007284!1.07e-15!71;UBERON:0000955!1.12e-15!50;UBERON:0006238!1.12e-15!50;UBERON:0003056!2.36e-15!49;UBERON:0002616!4.41e-15!49;UBERON:0002780!4.75e-14!39;UBERON:0001890!4.75e-14!39;UBERON:0006240!4.75e-14!39;UBERON:0003080!7.96e-14!40;UBERON:0002791!1.17e-13!29;UBERON:0003528!1.17e-13!29;UBERON:0001893!1.17e-13!29;UBERON:0007811!4.94e-13!86;UBERON:0000153!7.09e-13!94;UBERON:0000956!5.76e-10!21;UBERON:0001869!5.76e-10!21;UBERON:0000203!5.76e-10!21;UBERON:0002619!4.84e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.02e-23,73;UBERON:0004121,3.65e-23,95;UBERON:0000924,3.65e-23,95;UBERON:0006601,3.65e-23,95;UBERON:0001016,1.42e-22,75;UBERON:0010314,9.45e-20,92;UBERON:0010371,7.74e-19,73;UBERON:0002346,2.88e-18,64;UBERON:0003075,2.88e-18,64;UBERON:0007284,2.88e-18,64;UBERON:0000073,1.79e-17,54;UBERON:0001049,4.64e-16,52;UBERON:0005068,4.64e-16,52;UBERON:0006241,4.64e-16,52;UBERON:0007135,4.64e-16,52;UBERON:0002020,5.33e-16,34;UBERON:0003056,2.36e-15,49;UBERON:0000955,3.60e-14,47;UBERON:0006238,3.60e-14,47;UBERON:0002780,4.75e-14,39;UBERON:0001890,4.75e-14,39;UBERON:0006240,4.75e-14,39;UBERON:0003080,7.96e-14,40;UBERON:0003528,1.17e-13,29;UBERON:0002791,1.17e-13,29;UBERON:0001893,1.17e-13,29;UBERON:0002616,1.37e-13,46;UBERON:0000956,5.76e-10,21;UBERON:0001869,5.76e-10,21;UBERON:0000203,5.76e-10,21;UBERON:0002619,4.84e-08,17|phase1_expression=26.9050063136054,5.23463111459042,4.54999239389536,3.62957053568196,4.00716583957078,8.39396359559449,8.1764424208434,15.6239221364307,5.490760163915,3.97909694747389,27.9085288207573,23.3732425856336,17.9760766427766,18.3582845079895,16.9885978525988,15.3881203216268,20.2872944657163,23.0287380711514,24.680598049033,20.3707032863054,21.6009956983717,18.3688259721638,16.9779862940308,10.0795226359846,8.48814339948529,7.46501553349526,6.03066794622705,6.67960821326256,6.84084310042946,12.6015064879965,6.20845429834853,13.9706748161119,9.84103660135312,0,12.1317680295535,11.802659820453,8.77928231928187,22.600708059793,23.440060335714,19.8939022710043,17.0587131528994,21.8574555186703,26.2175590636823,10.8271263458996,10.44182391561,8.44315059943735,21.1245662973971,17.8780628231966,22.8473630043851,16.9154012194627,21.4179225086805,17.2503077237966,14.5970867270231,13.7818806982155,11.4271891708438,18.5226793945882,16.9054729563866,16.5015069528782,37.0239123373064,50.2541430308431,34.2268957893337,15.5868484751801,20.4537803105562,27.8968912357234,18.7884608887725,22.0248835633291,18.5752068521411,23.0530983192933,31.3142629171603,35.1015439662396,33.2313438935184,29.4220513935918,22.7494597180162,31.4801353982432,36.2295880448933,37.6879702510109,27.5289702498472,27.5804650264005,28.2636021191488,34.8179799607712,38.2418350258072,34.3802824567462,29.8725808931478,27.0126052815206,28.4204740864867,27.1058298635774,26.6235043094322,31.6879057903011,16.6597625333005,16.3990285431725,13.0439019915755,10.3250865237766,6.79971333707751,14.5719861742211,11.0461990966104,10.7526452903361,13.3422199125164,17.5543232255399,19.2241643406123,20.8470348961101,26.901093177346,17.9657068380045,40.7688383530633,7.11066703153331,4.11332977921307,6.33399663687746,4.54972000513305,10.1623652949963,17.0899003207133,17.5161724096493,17.0015620230813,11.2652226975492,19.3717017695089,14.4693734930518,15.4041206347773,16.7136566468468,11.1237735480468,9.39895819979426,17.6922110389975,17.9561203441624,17.4464799583711,17.455509112868,13.0474232852686,22.5441213698891,20.1068838540917,8.9409969323007,12.2211426996039,19.196887391789,11.9446013448681,17.9748767285787,17.8425235099264,33.0470946056833,22.0756886644191,27.105838477015,20.778804455956,23.2005006186893,24.7469654156269,14.680022531991,18.9542068825256,16.8353484709179,2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| ||
|EntrezGene=76425 | |||
|HGNC= | |||
|UniProt=Q9D7M1 | |||
|association_with_transcript=5bp_to_ENSMUST00000029090_5end | |||
|description=CAGE_peak_1_at_2310003C23Rik_5end | |||
|id=chr2:180444827..180444906,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.12e-16!33;CL:0000047!4.12e-16!33;CL:0000031!4.12e-16!33;CL:0000404!4.12e-16!33;CL:0000221!4.60e-15!44;CL:0000133!4.60e-15!44;CL:0002319!1.34e-14!43;CL:0000117!4.55e-14!23;CL:0000337!4.55e-14!23;CL:0000393!1.01e-11!39;CL:0000211!1.01e-11!39;CL:0000055!2.15e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.12e-16,33;CL:0000047,4.12e-16,33;CL:0000031,4.12e-16,33;CL:0000404,4.12e-16,33;CL:0000221,4.60e-15,44;CL:0000133,4.60e-15,44;CL:0002319,1.34e-14,43;CL:0000117,4.55e-14,23;CL:0000337,4.55e-14,23;CL:0000393,1.01e-11,39;CL:0000211,1.01e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.02e-23!73;UBERON:0005743!2.02e-23!73;UBERON:0000073!1.42e-22!75;UBERON:0001016!1.42e-22!75;UBERON:0004121!6.94e-21!102;UBERON:0000924!6.94e-21!102;UBERON:0006601!6.94e-21!102;UBERON:0000033!2.36e-17!63;UBERON:0001049!4.64e-16!52;UBERON:0005068!4.64e-16!52;UBERON:0006241!4.64e-16!52;UBERON:0007135!4.64e-16!52;UBERON:0002020!5.33e-16!34;UBERON:0002346!1.07e-15!71;UBERON:0003075!1.07e-15!71;UBERON:0007284!1.07e-15!71;UBERON:0000955!1.12e-15!50;UBERON:0006238!1.12e-15!50;UBERON:0003056!2.36e-15!49;UBERON:0002616!4.41e-15!49;UBERON:0002780!4.75e-14!39;UBERON:0001890!4.75e-14!39;UBERON:0006240!4.75e-14!39;UBERON:0003080!7.96e-14!40;UBERON:0002791!1.17e-13!29;UBERON:0003528!1.17e-13!29;UBERON:0001893!1.17e-13!29;UBERON:0007811!4.94e-13!86;UBERON:0000153!7.09e-13!94;UBERON:0000956!5.76e-10!21;UBERON:0001869!5.76e-10!21;UBERON:0000203!5.76e-10!21;UBERON:0002619!4.84e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.02e-23,73;UBERON:0004121,3.65e-23,95;UBERON:0000924,3.65e-23,95;UBERON:0006601,3.65e-23,95;UBERON:0001016,1.42e-22,75;UBERON:0010314,9.45e-20,92;UBERON:0010371,7.74e-19,73;UBERON:0002346,2.88e-18,64;UBERON:0003075,2.88e-18,64;UBERON:0007284,2.88e-18,64;UBERON:0000073,1.79e-17,54;UBERON:0001049,4.64e-16,52;UBERON:0005068,4.64e-16,52;UBERON:0006241,4.64e-16,52;UBERON:0007135,4.64e-16,52;UBERON:0002020,5.33e-16,34;UBERON:0003056,2.36e-15,49;UBERON:0000955,3.60e-14,47;UBERON:0006238,3.60e-14,47;UBERON:0002780,4.75e-14,39;UBERON:0001890,4.75e-14,39;UBERON:0006240,4.75e-14,39;UBERON:0003080,7.96e-14,40;UBERON:0003528,1.17e-13,29;UBERON:0002791,1.17e-13,29;UBERON:0001893,1.17e-13,29;UBERON:0002616,1.37e-13,46;UBERON:0000956,5.76e-10,21;UBERON:0001869,5.76e-10,21;UBERON:0000203,5.76e-10,21;UBERON:0002619,4.84e-08,17 | |||
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| |||
|short_description=p1@2310003C23Rik | |||
}} |
Revision as of 23:13, 13 September 2013
Short description: | p1@2310003C23Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_2310003C23Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | 5bp_to_ENSMUST00000029090_5end |
EntrezGene: | 2310003C23Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.12e-16 | 33 |
neuronal stem cell | 4.12e-16 | 33 |
neuroblast | 4.12e-16 | 33 |
electrically signaling cell | 4.12e-16 | 33 |
ectodermal cell | 4.60e-15 | 44 |
neurectodermal cell | 4.60e-15 | 44 |
neural cell | 1.34e-14 | 43 |
CNS neuron (sensu Vertebrata) | 4.55e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.55e-14 | 23 |
electrically responsive cell | 1.01e-11 | 39 |
electrically active cell | 1.01e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.02e-23 | 73 |
ectoderm-derived structure | 3.65e-23 | 95 |
ectoderm | 3.65e-23 | 95 |
presumptive ectoderm | 3.65e-23 | 95 |
nervous system | 1.42e-22 | 75 |
structure with developmental contribution from neural crest | 9.45e-20 | 92 |
ecto-epithelium | 7.74e-19 | 73 |
neurectoderm | 2.88e-18 | 64 |
neural plate | 2.88e-18 | 64 |
presumptive neural plate | 2.88e-18 | 64 |
regional part of nervous system | 1.79e-17 | 54 |
neural tube | 4.64e-16 | 52 |
neural rod | 4.64e-16 | 52 |
future spinal cord | 4.64e-16 | 52 |
neural keel | 4.64e-16 | 52 |
gray matter | 5.33e-16 | 34 |
pre-chordal neural plate | 2.36e-15 | 49 |
brain | 3.60e-14 | 47 |
future brain | 3.60e-14 | 47 |
regional part of forebrain | 4.75e-14 | 39 |
forebrain | 4.75e-14 | 39 |
future forebrain | 4.75e-14 | 39 |
anterior neural tube | 7.96e-14 | 40 |
brain grey matter | 1.17e-13 | 29 |
regional part of telencephalon | 1.17e-13 | 29 |
telencephalon | 1.17e-13 | 29 |
regional part of brain | 1.37e-13 | 46 |
cerebral cortex | 5.76e-10 | 21 |
cerebral hemisphere | 5.76e-10 | 21 |
pallium | 5.76e-10 | 21 |
regional part of cerebral cortex | 4.84e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.